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Protein

UPF0201 protein SSO1042

Gene

SSO1042

Organism
Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciSSOL273057:GCH2-988-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0201 protein SSO1042UniRule annotation
Gene namesi
Ordered Locus Names:SSO1042
OrganismiSulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Taxonomic identifieri273057 [NCBI]
Taxonomic lineageiArchaeaCrenarchaeotaThermoproteiSulfolobalesSulfolobaceaeSulfolobus
Proteomesi
  • UP000001974 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000945191 – 145UPF0201 protein SSO1042Add BLAST145

Interactioni

Protein-protein interaction databases

STRINGi273057.SSO1042.

Structurei

Secondary structure

1145
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi3 – 10Combined sources8
Helixi16 – 24Combined sources9
Beta strandi30 – 33Combined sources4
Beta strandi35 – 37Combined sources3
Beta strandi41 – 49Combined sources9
Helixi50 – 53Combined sources4
Helixi54 – 62Combined sources9
Helixi66 – 76Combined sources11
Beta strandi79 – 86Combined sources8
Helixi88 – 92Combined sources5
Beta strandi110 – 115Combined sources6
Helixi119 – 126Combined sources8
Beta strandi134 – 136Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2NWUX-ray2.40A/B2-145[»]
ProteinModelPortaliQ97Z89.
SMRiQ97Z89.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ97Z89.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0201 family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG01043. Archaea.
COG1931. LUCA.
HOGENOMiHOG000224697.
InParanoidiQ97Z89.
KOiK09736.
OMAiEVEAYVY.

Family and domain databases

Gene3Di3.30.1440.10. 1 hit.
HAMAPiMF_01112. UPF0201. 1 hit.
InterProiIPR022803. Ribosomal_L5_domain.
IPR002739. UPF0201.
[Graphical view]
PfamiPF01877. RNA_binding. 1 hit.
[Graphical view]
SUPFAMiSSF55282. SSF55282. 1 hit.

Sequencei

Sequence statusi: Complete.

Q97Z89-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVKVMVVAEV RPSEDVNKVL SAISNFFDFE KMNTRKEGII DILVLEARTL
60 70 80 90 100
KSLLKFHRVL RNERILDSAR KYLMKGIEGN TIAFMIHKQA AAVGVLSFVD
110 120 130 140
SDKESPLGAI KFYIEYQNPK EIVDWLAPKT AHGVPLWDNP VPPDV
Length:145
Mass (Da):16,423
Last modified:October 1, 2001 - v1
Checksum:iD4CD325A1BC799F0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE006641 Genomic DNA. Translation: AAK41304.1.
PIRiA99256.
RefSeqiWP_009989187.1. NC_002754.1.

Genome annotation databases

EnsemblBacteriaiAAK41304; AAK41304; SSO1042.
GeneIDi27427355.
KEGGisso:SSO1042.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE006641 Genomic DNA. Translation: AAK41304.1.
PIRiA99256.
RefSeqiWP_009989187.1. NC_002754.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2NWUX-ray2.40A/B2-145[»]
ProteinModelPortaliQ97Z89.
SMRiQ97Z89.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi273057.SSO1042.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAK41304; AAK41304; SSO1042.
GeneIDi27427355.
KEGGisso:SSO1042.

Phylogenomic databases

eggNOGiarCOG01043. Archaea.
COG1931. LUCA.
HOGENOMiHOG000224697.
InParanoidiQ97Z89.
KOiK09736.
OMAiEVEAYVY.

Enzyme and pathway databases

BioCyciSSOL273057:GCH2-988-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ97Z89.

Family and domain databases

Gene3Di3.30.1440.10. 1 hit.
HAMAPiMF_01112. UPF0201. 1 hit.
InterProiIPR022803. Ribosomal_L5_domain.
IPR002739. UPF0201.
[Graphical view]
PfamiPF01877. RNA_binding. 1 hit.
[Graphical view]
SUPFAMiSSF55282. SSF55282. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiY1042_SULSO
AccessioniPrimary (citable) accession number: Q97Z89
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 27, 2002
Last sequence update: October 1, 2001
Last modified: November 2, 2016
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.