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Protein

UPF0201 protein SSO1042

Gene

SSO1042

Organism
Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciSSOL273057:GCH2-987-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0201 protein SSO1042UniRule annotation
Gene namesi
Ordered Locus Names:SSO1042
OrganismiSulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Taxonomic identifieri273057 [NCBI]
Taxonomic lineageiArchaeaCrenarchaeotaThermoproteiSulfolobalesSulfolobaceaeSulfolobus
Proteomesi
  • UP000001974 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 145145UPF0201 protein SSO1042PRO_0000094519Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi273057.SSO1042.

Structurei

Secondary structure

1
145
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi3 – 108Combined sources
Helixi16 – 249Combined sources
Beta strandi30 – 334Combined sources
Beta strandi35 – 373Combined sources
Beta strandi41 – 499Combined sources
Helixi50 – 534Combined sources
Helixi54 – 629Combined sources
Helixi66 – 7611Combined sources
Beta strandi79 – 868Combined sources
Helixi88 – 925Combined sources
Beta strandi110 – 1156Combined sources
Helixi119 – 1268Combined sources
Beta strandi134 – 1363Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2NWUX-ray2.40A/B2-145[»]
ProteinModelPortaliQ97Z89.
SMRiQ97Z89. Positions 3-143.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ97Z89.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0201 family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG01043. Archaea.
COG1931. LUCA.
HOGENOMiHOG000224697.
InParanoidiQ97Z89.
KOiK09736.
OMAiEVEAYVY.

Family and domain databases

Gene3Di3.30.1440.10. 1 hit.
HAMAPiMF_01112. UPF0201.
InterProiIPR022803. Ribosomal_L5_domain.
IPR002739. UPF0201.
[Graphical view]
PfamiPF01877. RNA_binding. 1 hit.
[Graphical view]
SUPFAMiSSF55282. SSF55282. 1 hit.

Sequencei

Sequence statusi: Complete.

Q97Z89-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVKVMVVAEV RPSEDVNKVL SAISNFFDFE KMNTRKEGII DILVLEARTL
60 70 80 90 100
KSLLKFHRVL RNERILDSAR KYLMKGIEGN TIAFMIHKQA AAVGVLSFVD
110 120 130 140
SDKESPLGAI KFYIEYQNPK EIVDWLAPKT AHGVPLWDNP VPPDV
Length:145
Mass (Da):16,423
Last modified:October 1, 2001 - v1
Checksum:iD4CD325A1BC799F0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE006641 Genomic DNA. Translation: AAK41304.1.
PIRiA99256.
RefSeqiWP_009989187.1. NC_002754.1.

Genome annotation databases

EnsemblBacteriaiAAK41304; AAK41304; SSO1042.
GeneIDi25404495.
KEGGisso:SSO1042.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE006641 Genomic DNA. Translation: AAK41304.1.
PIRiA99256.
RefSeqiWP_009989187.1. NC_002754.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2NWUX-ray2.40A/B2-145[»]
ProteinModelPortaliQ97Z89.
SMRiQ97Z89. Positions 3-143.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi273057.SSO1042.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAK41304; AAK41304; SSO1042.
GeneIDi25404495.
KEGGisso:SSO1042.

Phylogenomic databases

eggNOGiarCOG01043. Archaea.
COG1931. LUCA.
HOGENOMiHOG000224697.
InParanoidiQ97Z89.
KOiK09736.
OMAiEVEAYVY.

Enzyme and pathway databases

BioCyciSSOL273057:GCH2-987-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ97Z89.

Family and domain databases

Gene3Di3.30.1440.10. 1 hit.
HAMAPiMF_01112. UPF0201.
InterProiIPR022803. Ribosomal_L5_domain.
IPR002739. UPF0201.
[Graphical view]
PfamiPF01877. RNA_binding. 1 hit.
[Graphical view]
SUPFAMiSSF55282. SSF55282. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 35092 / DSM 1617 / JCM 11322 / P2.

Entry informationi

Entry nameiY1042_SULSO
AccessioniPrimary (citable) accession number: Q97Z89
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 27, 2002
Last sequence update: October 1, 2001
Last modified: November 11, 2015
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.