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Protein

UPF0210 protein SP_0239

Gene

SP_0239

Organism
Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciSPNE170187:GHGN-245-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0210 protein SP_0239
Gene namesi
Ordered Locus Names:SP_0239
OrganismiStreptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
Taxonomic identifieri170187 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliLactobacillalesStreptococcaceaeStreptococcus
Proteomesi
  • UP000000585 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 445445UPF0210 protein SP_0239PRO_0000070561Add
BLAST

Interactioni

Subunit structurei

Homodimer.1 Publication

Protein-protein interaction databases

IntActiQ97ST4. 1 interaction.
STRINGi170187.SpneT_02000070.

Structurei

Secondary structure

1
445
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi3 – 1513Combined sources
Beta strandi20 – 278Combined sources
Helixi30 – 323Combined sources
Helixi37 – 5115Combined sources
Turni52 – 543Combined sources
Helixi55 – 6612Combined sources
Beta strandi70 – 789Combined sources
Helixi80 – 856Combined sources
Helixi93 – 10614Combined sources
Beta strandi109 – 1179Combined sources
Helixi126 – 13813Combined sources
Beta strandi141 – 1488Combined sources
Turni152 – 1543Combined sources
Beta strandi155 – 1573Combined sources
Helixi158 – 17215Combined sources
Helixi178 – 1814Combined sources
Beta strandi182 – 1876Combined sources
Beta strandi206 – 2138Combined sources
Helixi216 – 2249Combined sources
Turni225 – 2284Combined sources
Helixi231 – 26030Combined sources
Beta strandi262 – 2676Combined sources
Helixi281 – 2877Combined sources
Helixi298 – 31417Combined sources
Helixi334 – 3418Combined sources
Helixi347 – 3537Combined sources
Beta strandi363 – 3664Combined sources
Helixi372 – 38918Combined sources
Beta strandi393 – 3997Combined sources
Helixi427 – 4315Combined sources
Beta strandi434 – 4363Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2HA9X-ray2.70A/B1-445[»]
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ97ST4.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0210 family.Curated

Phylogenomic databases

eggNOGiENOG4105CAG. Bacteria.
COG2848. LUCA.
HOGENOMiHOG000059201.
KOiK09157.
OMAiEAMTSVC.
OrthoDBiEOG64BQ65.

Family and domain databases

HAMAPiMF_01221. UPF0210.
InterProiIPR007841. UPF0210.
[Graphical view]
PfamiPF05167. DUF711. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q97ST4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDIRQVTETI AMIEEQNFDI RTITMGISLL DCIDPDINRA AEKIYQKITT
60 70 80 90 100
KAANLVAVGD EIAAELGIPI VNKRVSVTPI SLIGAATDAT DYVVLAKALD
110 120 130 140 150
KAAKEIGVDF IGGFSALVQK GYQKGDEILI NSIPRALAET DKVCSSVNIG
160 170 180 190 200
STKSGINMTA VADMGRIIKE TANLSDMGVA KLVVFANAVE DNPFMAGAFH
210 220 230 240 250
GVGEADVIIN VGVSGPGVVK RALEKVRGQS FDVVAETVKK TAFKITRIGQ
260 270 280 290 300
LVGQMASERL GVEFGIVDLS LAPTPAVGDS VARVLEEMGL ETVGTHGTTA
310 320 330 340 350
ALALLNDQVK KGGVMACNQV GGLSGAFIPV SEDEGMIAAV QNGSLNLEKL
360 370 380 390 400
EAMTAICSVG LDMIAIPEDT PAETIAAMIA DEAAIGVINM KTTAVRIIPK
410 420 430 440
GKEGDMIEFG GLLGTAPVMK VNGASSVDFI SRGGQIPAPI HSFKN
Length:445
Mass (Da):46,354
Last modified:October 1, 2001 - v1
Checksum:iF6B6E30D3E206075
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE005672 Genomic DNA. Translation: AAK74419.1.
PIRiB95028.
RefSeqiWP_000354896.1. NZ_AKVY01000001.1.

Genome annotation databases

EnsemblBacteriaiAAK74419; AAK74419; SP_0239.
KEGGispn:SP_0239.
PATRICi19704803. VBIStrPne105772_0247.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE005672 Genomic DNA. Translation: AAK74419.1.
PIRiB95028.
RefSeqiWP_000354896.1. NZ_AKVY01000001.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2HA9X-ray2.70A/B1-445[»]
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ97ST4. 1 interaction.
STRINGi170187.SpneT_02000070.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAK74419; AAK74419; SP_0239.
KEGGispn:SP_0239.
PATRICi19704803. VBIStrPne105772_0247.

Phylogenomic databases

eggNOGiENOG4105CAG. Bacteria.
COG2848. LUCA.
HOGENOMiHOG000059201.
KOiK09157.
OMAiEAMTSVC.
OrthoDBiEOG64BQ65.

Enzyme and pathway databases

BioCyciSPNE170187:GHGN-245-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ97ST4.

Family and domain databases

HAMAPiMF_01221. UPF0210.
InterProiIPR007841. UPF0210.
[Graphical view]
PfamiPF05167. DUF711. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-334 / TIGR4.
  2. "Crystal structure of hypothetical upf0210 protein SP0239."
    Midwest center for structural genomics (MCSG)
    Submitted (AUG-2006) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.7 ANGSTROMS), SUBUNIT.
    Strain: ATCC BAA-334 / TIGR4.

Entry informationi

Entry nameiY239_STRPN
AccessioniPrimary (citable) accession number: Q97ST4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 19, 2002
Last sequence update: October 1, 2001
Last modified: November 11, 2015
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.