Q97SQ7 (Q97SQ7_STRPN) Unreviewed, UniProtKB/TrEMBL
Last modified
January 25, 2012.
Version 81.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize orderNames and origin
| Protein names | Submitted name: Putative alkaline amylopullulanase EMBL AAK74446.1 | ||
| Gene names |
| ||
| Organism | Streptococcus pneumoniae TIGR4 [Complete proteome] EMBL AAK74446.1 | ||
| Taxonomic identifier | 170187 [NCBI] | ||
| Taxonomic lineage | Bacteria › Firmicutes › Lactobacillales › Streptococcaceae › Streptococcus |
Protein attributes
| Sequence length | 1280 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Subcellular location | Secreted › cell wall; Peptidoglycan-anchor By similarity SAAS SAAS019931. |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Secreted SAAS SAAS019931 |
| Ligand | Calcium PDB 2YA2 PDB 2YA0 Metal-binding PDB 2J44 PDB 2YA2 PDB 2YA0 Zinc PDB 2J44 |
| Technical term | 3D-structure PDB 2J44 PDB 2YA2 PDB 2YA0 PDB 2YA1 Complete proteome |
| Gene Ontology (GO) | |
| Biological process | carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro |
| Cellular component | cell surface Inferred from electronic annotation. Source: InterPro cell wallInferred from electronic annotation. Source: UniProtKB-SubCell membraneInferred from electronic annotation. Source: InterPro |
| Molecular function | carbohydrate binding Inferred from electronic annotation. Source: InterPro hydrolase activity, hydrolyzing O-glycosyl compoundsInferred from electronic annotation. Source: InterPro metal ion bindingInferred from electronic annotation. Source: UniProtKB-KW |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Regions | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Region | 156 – 158 | 3 | Glucose binding PDB 2J44 PDB 2YA1 | ||||||
| Region | 263 – 265 | 3 | Glucose binding PDB 2J44 PDB 2YA1 | ||||||
| Region | 839 – 842 | 4 | Glucose binding PDB 2YA1 | ||||||
| Region | 989 – 991 | 3 | Glucose binding PDB 2YA2 PDB 2YA1 | ||||||
Sites | |||||||||
| Metal binding | 281 | 1 | Zinc PDB 2J44 | ||||||
| Metal binding | 310 | 1 | Zinc PDB 2J44 | ||||||
| Metal binding | 661 | 1 | Calcium 1; via carbonyl oxygen PDB 2YA0 | ||||||
| Metal binding | 663 | 1 | Calcium 1; via carbonyl oxygen PDB 2YA0 | ||||||
| Metal binding | 828 | 1 | Calcium 2; via carbonyl oxygen PDB 2YA2 | ||||||
| Metal binding | 831 | 1 | Calcium 2; via carbonyl oxygen PDB 2YA2 | ||||||
| Metal binding | 832 | 1 | Calcium 2 PDB 2YA2 | ||||||
| Metal binding | 882 | 1 | Calcium 2 PDB 2YA2 | ||||||
| Metal binding | 886 | 1 | Calcium 2 PDB 2YA2 | ||||||
| Metal binding | 992 | 1 | Calcium 1 PDB 2YA0 | ||||||
| Binding site | 168 | 1 | Glucose PDB 2J44 PDB 2YA1 | ||||||
| Binding site | 214 | 1 | Glucose PDB 2J44 PDB 2YA1 | ||||||
| Binding site | 276 | 1 | Glucose PDB 2J44 PDB 2YA1 | ||||||
| Binding site | 318 | 1 | Glucose PDB 2J44 PDB 2YA1 | ||||||
| Binding site | 323 | 1 | Glucose PDB 2J44 PDB 2YA1 | ||||||
| Binding site | 668 | 1 | Glucose PDB 2YA2 | ||||||
| Binding site | 743 | 1 | Glucose; via amide nitrogen PDB 2YA1 | ||||||
| Binding site | 809 | 1 | Glucose PDB 2YA1 | ||||||
| Binding site | 896 | 1 | Glucose PDB 2YA1 | ||||||
| Binding site | 969 | 1 | Glucose PDB 2YA1 | ||||||
Sequences
| ||||||||||||||||||
References
| « Hide 'large scale' references | |
| [1] | "Complete genome sequence of a virulent isolate of Streptococcus pneumoniae." Tettelin H., Nelson K.E., Paulsen I.T., Eisen J.A., Read T.D., Peterson S., Heidelberg J., DeBoy R.T., Haft D.H., Dodson R.J., Durkin A.S., Gwinn M., Kolonay J.F., Nelson W.C., Peterson J.D., Umayam L.A., White O., Salzberg S.L. Fraser C.M.Science 293:498-506(2001) [PubMed: 11463916] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-334 / TIGR4. |
| [2] | "Identification and structural basis of binding to host lung glycogen by streptococcal virulence factors." van Bueren A.L., Higgins M., Wang D., Burke R.D., Boraston A.B. Nat. Struct. Mol. Biol. 14:76-84(2007) [PubMed: 17187076] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.10 ANGSTROMS) OF 135-353 IN COMPLEX WITH GLUCOSE AND ZINC. |
| [3] | "The Conformation and Function of a Multi-Modular Glycogen-Degrading Pneumococcal Virulence Factor." Lammerts Van Bueren A., Ficko-Blean E., Pluvinage B., Hehemann J.H., Higgins M.A., Deng L., Ogunniyi A.D., Stroeher U.H., Warry N.E., Burke R.D., Czjzek M., Paton J.C., Vocadlo D.J., Boraston A.B. Submitted (FEB-2011) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.85 ANGSTROMS) OF 437-1150 IN COMPLEX WITH CALCIUM. |
Cross-references
Sequence databases | |||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | AE005672 Genomic DNA. Translation: AAK74446.1. | ||||||||||||||||||||||||||||||
| PIR | E95031. | ||||||||||||||||||||||||||||||
| RefSeq | NP_344806.1. NC_003028.3. | ||||||||||||||||||||||||||||||
3D structure databases | |||||||||||||||||||||||||||||||
| PDBe RCSB PDB PDBj |
| ||||||||||||||||||||||||||||||
| ProteinModelPortal | Q97SQ7. | ||||||||||||||||||||||||||||||
| SMR | Q97SQ7. Positions 135-353. | ||||||||||||||||||||||||||||||
| ModBase | Search... | ||||||||||||||||||||||||||||||
Protein family/group databases | |||||||||||||||||||||||||||||||
| CAZy | CBM41. Carbohydrate-Binding Module Family 41. CBM48. Carbohydrate-Binding Module Family 48. GH13. Glycoside Hydrolase Family 13. | ||||||||||||||||||||||||||||||
Protocols and materials databases | |||||||||||||||||||||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||||||||||||||||||||
Genome annotation databases | |||||||||||||||||||||||||||||||
| EnsemblBacteria | EBSTRT00000025252; EBSTRP00000024344; EBSTRG00000025252. | ||||||||||||||||||||||||||||||
| GeneID | 930075. | ||||||||||||||||||||||||||||||
| GenomeReviews | Gene locus SP_0268 in contig AE005672_GR. | ||||||||||||||||||||||||||||||
| KEGG | spn:SP_0268. | ||||||||||||||||||||||||||||||
| PATRIC | 19704869. VBIStrPne105772_0280. | ||||||||||||||||||||||||||||||
| TIGR | SP_0268. | ||||||||||||||||||||||||||||||
Phylogenomic databases | |||||||||||||||||||||||||||||||
| GeneTree | EBGT00050000026660. | ||||||||||||||||||||||||||||||
| HOGENOM | HBG575037. | ||||||||||||||||||||||||||||||
| OMA | KSGFPNE. | ||||||||||||||||||||||||||||||
| ProtClustDB | CLSK803694. | ||||||||||||||||||||||||||||||
Enzyme and pathway databases | |||||||||||||||||||||||||||||||
| BioCyc | SPNE170187-1:SP_0268-MONOMER. | ||||||||||||||||||||||||||||||
Family and domain databases | |||||||||||||||||||||||||||||||
| InterPro | IPR015902. Alpha_amylase. IPR006047. Glyco_hydro_13_cat_dom. IPR004193. Glyco_hydro_13_N. IPR013781. Glyco_hydro_subgr_catalytic. IPR017853. Glycoside_hydrolase_SF. IPR005877. Gpos_YSIRK. IPR019948. Gram-positive_anchor. IPR013783. Ig-like_fold. IPR019931. LPXTG-motif_cell_wall_anchor. IPR005323. PUD. IPR011838. Pullulan_Gpos. IPR001899. Surface_protein_Gram_pos_cocci. [Graphical view] | ||||||||||||||||||||||||||||||
| Gene3D | G3DSA:3.20.20.80. Glyco_hydro_cat. 2 hits. G3DSA:2.60.40.10. Ig-like_fold. 1 hit. | ||||||||||||||||||||||||||||||
| KO | K01176. | ||||||||||||||||||||||||||||||
| PANTHER | PTHR10357. Alpha_amylase. 1 hit. | ||||||||||||||||||||||||||||||
| Pfam | PF00128. Alpha-amylase. 2 hits. PF02922. CBM_48. 1 hit. PF00746. Gram_pos_anchor. 1 hit. PF03714. PUD. 2 hits. PF04650. YSIRK_signal. 1 hit. [Graphical view] | ||||||||||||||||||||||||||||||
| SUPFAM | SSF51445. Glyco_hydro_cat. 1 hit. | ||||||||||||||||||||||||||||||
| TIGRFAMs | TIGR01167. LPXTG_anchor. 1 hit. TIGR02102. Pullulan_Gpos. 1 hit. TIGR01168. YSIRK_signal. 1 hit. | ||||||||||||||||||||||||||||||
| PROSITE | PS50847. GRAM_POS_ANCHORING. 1 hit. [Graphical view] | ||||||||||||||||||||||||||||||
| ProtoNet | Search... | ||||||||||||||||||||||||||||||
Entry information
| Entry name | Q97SQ7_STRPN | ||||||||
| Accession | Primary (citable) accession number: Q97SQ7 | ||||||||
| Entry history |
| ||||||||
| Entry status | Unreviewed (UniProtKB/TrEMBL) | ||||||||

Clusters with