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Protein

UPF0342 protein SP_1372

Gene

SP_1372

Organism
Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciSPNE170187:GHGN-1298-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0342 protein SP_1372UniRule annotation
Gene namesi
Ordered Locus Names:SP_1372
OrganismiStreptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
Taxonomic identifieri170187 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliLactobacillalesStreptococcaceaeStreptococcus
Proteomesi
  • UP000000585 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001099941 – 112UPF0342 protein SP_1372Add BLAST112

Interactioni

Protein-protein interaction databases

STRINGi170187.SpneT_02001693.

Structurei

Secondary structure

1112
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi1 – 16Combined sources16
Helixi19 – 33Combined sources15
Helixi35 – 47Combined sources13
Helixi48 – 50Combined sources3
Turni51 – 54Combined sources4
Helixi63 – 77Combined sources15
Helixi80 – 108Combined sources29

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2IAZX-ray2.40A/B/C/D1-112[»]
ProteinModelPortaliQ97Q59.
SMRiQ97Q59.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ97Q59.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0342 family.UniRule annotation

Phylogenomic databases

eggNOGiCOG3679. LUCA.
HOGENOMiHOG000284933.
OMAiYVAFQEE.

Family and domain databases

Gene3Di1.20.1500.10. 1 hit.
HAMAPiMF_01526. UPF0342. 1 hit.
InterProiIPR010368. Com_YlbF.
IPR023378. YheA/YmcA-like_dom.
[Graphical view]
PfamiPF06133. Com_YlbF. 1 hit.
[Graphical view]
SUPFAMiSSF158622. SSF158622. 1 hit.

Sequencei

Sequence statusi: Complete.

Q97Q59-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSNIYDSANE LSRGLRGLPE YKAVKAAKDA IAADAEASKI FTDYLAFQEE
60 70 80 90 100
IQKLAQTGQM PDASFQAKME GFGKQIQGNS LLSEFFTKQQ QLAIYLSDIE
110
KIVFEPVSEL LK
Length:112
Mass (Da):12,457
Last modified:October 1, 2001 - v1
Checksum:i0ACB9EEEA61D4865
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE005672 Genomic DNA. Translation: AAK75470.1.
PIRiE95159.
RefSeqiWP_000065987.1. NZ_AKVY01000001.1.

Genome annotation databases

EnsemblBacteriaiAAK75470; AAK75470; SP_1372.
KEGGispn:SP_1372.
PATRICi19707149. VBIStrPne105772_1417.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE005672 Genomic DNA. Translation: AAK75470.1.
PIRiE95159.
RefSeqiWP_000065987.1. NZ_AKVY01000001.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2IAZX-ray2.40A/B/C/D1-112[»]
ProteinModelPortaliQ97Q59.
SMRiQ97Q59.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi170187.SpneT_02001693.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAK75470; AAK75470; SP_1372.
KEGGispn:SP_1372.
PATRICi19707149. VBIStrPne105772_1417.

Phylogenomic databases

eggNOGiCOG3679. LUCA.
HOGENOMiHOG000284933.
OMAiYVAFQEE.

Enzyme and pathway databases

BioCyciSPNE170187:GHGN-1298-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ97Q59.

Family and domain databases

Gene3Di1.20.1500.10. 1 hit.
HAMAPiMF_01526. UPF0342. 1 hit.
InterProiIPR010368. Com_YlbF.
IPR023378. YheA/YmcA-like_dom.
[Graphical view]
PfamiPF06133. Com_YlbF. 1 hit.
[Graphical view]
SUPFAMiSSF158622. SSF158622. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiY1372_STRPN
AccessioniPrimary (citable) accession number: Q97Q59
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 4, 2005
Last sequence update: October 1, 2001
Last modified: November 2, 2016
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.