Putative platelet activating factor - Streptococcus pneumoniae TIGR4

Preferred order of sections

Names and origin

Protein names

Submitted name:
Putative platelet activating factor EMBL AAK75544.1

Gene names

Ordered Locus Names:

SP_1450

Organism

Streptococcus pneumoniae TIGR4 [Complete proteome] EMBL AAK75544.1

Taxonomic identifier

170187 [NCBI]

Taxonomic lineage

Bacteria › Firmicutes › Lactobacillales › Streptococcaceae › Streptococcus

Protein attributes

Sequence length	211 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Ligand	Magnesium PDB 2HSJ Metal-binding PDB 2HSJ
Technical term	3D-structure PDB 2HSJ Complete proteome
Gene Ontology (GO)
Biological process	lipid metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	hydrolase activity, acting on ester bonds Inferred from electronic annotation. Source: InterPro metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Sites

Metal binding

161

1

Magnesium; via carbonyl oxygen PDB 2HSJ

Metal binding

164

1

Magnesium; via carbonyl oxygen PDB 2HSJ

Metal binding

167

1

Magnesium; via carbonyl oxygen PDB 2HSJ

Sequences

Sequence

Length

Mass (Da)

Tools

Q97PY9 [UniParc].

Last modified October 1, 2001. Version 1.
Checksum: 81E055B38197AE51
Show »

FASTA

211

24,117

        10         20         30         40         50         60 
MAVQLLENWL LKEQEKIQTK YRHLNHISVV EPNILFIGDS IVEYYPLQEL FGTSKTIVNR 

        70         80         90        100        110        120 
GIRGYQTGLL LENLDAHLYG GAVDKIFLLI GTNDIGKDVP VNEALNNLEA IIQSVARDYP 

       130        140        150        160        170        180 
LTEIKLLSIL PVNEREEYQQ AVYIRSNEKI QNWNQAYQEL ASAYMQVEFV PVFDCLTDQA 

       190        200        210 
GQLKKEYTTD GLHLSIAGYQ ALSKSLKDYL Y

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References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete genome sequence of a virulent isolate of Streptococcus pneumoniae." Tettelin H., Nelson K.E., Paulsen I.T., Eisen J.A., Read T.D., Peterson S., Heidelberg J., DeBoy R.T., Haft D.H., Dodson R.J., Durkin A.S., Gwinn M., Kolonay J.F., Nelson W.C., Peterson J.D., Umayam L.A., White O., Salzberg S.L. Fraser C.M. Science 293:498-506(2001) [PubMed: 11463916] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-334 / TIGR4.
[2]	"The structure of a putative platelet activating factor from Streptococcus pneumonia." Cuff M.E., Mulligan R., Abdullah J., Joachimiak A. Submitted (JUL-2006) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.50 ANGSTROMS) IN COMPLEX WITH MAGNESIUM.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AE005672 Genomic DNA. Translation: AAK75544.1.

PIR

G95168.
H98034.

RefSeq

NP_345904.1. NC_003028.3.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2HSJ	X-ray	1.50	A/B/C/D	1-211	[»]

ProteinModelPortal

Q97PY9.

SMR

Q97PY9. Positions 1-211.

ModBase

Search...

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblBacteria

EBSTRT00000025351; EBSTRP00000024443; EBSTRG00000025351.

GeneID

931386.

GenomeReviews

Gene locus SP_1450 in contig AE005672_GR.

KEGG

spn:SP_1450.

PATRIC

19707319. VBIStrPne105772_1502.

TIGR

SP_1450.

Phylogenomic databases

GeneTree

EBGT00050000028113.

HOGENOM

HBG697389.

OMA

QLANAYM.

ProtClustDB

CLSK884099.

Enzyme and pathway databases

BioCyc

SPNE170187-1:SP_1450-MONOMER.

Family and domain databases

InterPro

IPR013830. Esterase_SGNH_hydro-type.
IPR013831. Esterase_SGNH_hydro-type_subgr.
IPR001087. Lipase_GDSL.
[Graphical view]

Gene3D

G3DSA:3.40.50.1110. Esterase_SGNH_hydro-type_subgr. 1 hit.

Pfam

PF00657. Lipase_GDSL. 1 hit.
[Graphical view]

SUPFAM

SSF52266. Esterase_SGNH_hydro-type. 1 hit.

ProtoNet

Search...

Entry information

Entry name

Q97PY9_STRPN

Accession

Primary (citable) accession number: Q97PY9

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2001
Last sequence update:	October 1, 2001
Last modified:	January 25, 2012
This is version 50 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)