Q97M45 (Q97M45_CLOAB) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative polygalacturonase (Pectinase) EMBL AAK78335.1

Gene names

Ordered Locus Names:

CA_C0355

Organism

Clostridium acetobutylicum

Taxonomic identifier

1488 [NCBI]

Taxonomic lineage

Bacteria › Firmicutes › Clostridia › Clostridiales › Clostridiaceae › Clostridium

Protein attributes

Sequence length	513 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 28 family. RuleBase RU000404

Ontologies

Keywords
Biological process	Cell wall biogenesis/degradation RuleBase RU000404
Molecular function	Glycosidase RuleBase RU000404 Hydrolase
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro cellular cell wall organization Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	polygalacturonase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q97M45 [UniParc]. Last modified October 1, 2001. Version 1. Checksum: 499CFD140ED7E9B8	FASTA	513	57,247
	10 20 30 40 50 60 MNFNLVTATS TSASFEIENN KCFYLESTAD VYMNNERILT TDKNVFTLNN LTPGTEYSIF 70 80 90 100 110 120 IEDTESKAKS PVISIKTKLE SAVVNILDFG AVGDGNHVNT AFIQAAIQVC PAFGRVIIPK 130 140 150 160 170 180 GTYLTGPLFL KSNITLELEE GSVLLGLKER EHYPILKANI SMTNRDFYLG SWEGNEADCF 190 200 210 220 230 240 ASLITAINVE NVNIIGKGTI DGNSDFDTWW FKAKEKRIAW RPRTLFLNAC KNILVEGVTI 250 260 270 280 290 300 KNSPSWTIHP LMSDHLKFIN LSIENPFNAP NTDALDPESC KNVLILGDTF SVGDDCIAIK 310 320 330 340 350 360 SGKIDISKKN PVSSENINIR NCNMRSGHGA VVLGSEMSSG LKSIFIEKCI FNATDRGLRI 370 380 390 400 410 420 KTRRGRGSKG IIDNIHMKNI KMDKVLTPFS INSFYFCDDD GKTEYVWSKE KLPVDDKTPY 430 440 450 460 470 480 IGSIYVEDVT CTNAHVCAAF MYGLPEQKIE KVSMKNVSVS FDENAKEDYA DMMSFLEPMK 490 500 510 RNGMYFNNIK DLVLENVTVE KALNEEITKL NIG

References

[1]

"Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum." Noelling J., Breton G., Omelchenko M.V., Makarova K.S., Zeng Q., Gibson R., Lee H.M., Dubois J., Qiu D., Hitti J., Wolf Y.I., Tatusov R.L., Sabathe F., Doucette-Stamm L.A., Soucaille P., Daly M.J., Bennett G.N., Koonin E.V., Smith D.R. J. Bacteriol. 183:4823-4838(2001) [PubMed: 11466286] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE001437 Genomic DNA. Translation: AAK78335.1.
PIR	D96943.
RefSeq	NP_346995.1. NC_003030.1.
3D structure databases
HSSP	HSSP built from PDB template 1BHE based on UniProtKB P26509.
ProteinModelPortal	Q97M45.
ModBase	Search...
Protein family/group databases
CAZy	GH28. Glycoside Hydrolase Family 28.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	1116538.
GenomeReviews	Gene locus CA_C0355 in contig AE001437_GR.
KEGG	cac:CA_C0355.
NMPDR	fig|272562.1.peg.524.
PATRIC	32035053. VBICloAce74127_0548.
Phylogenomic databases
HOGENOM	HBG346250.
OMA	ISPTSAM.
ProtClustDB	CLSK882393.
Family and domain databases
InterPro	IPR000743. Glyco_hydro_28. IPR006626. PbH1. IPR012334. Pectin_lyas_fold. IPR011050. Pectin_lyase_fold/virulence. [Graphical view]
Gene3D	G3DSA:2.160.20.10. Pectin_lyas_fold. 1 hit.
Pfam	PF00295. Glyco_hydro_28. 1 hit. [Graphical view]
SMART	SM00710. PbH1. 4 hits. [Graphical view]
SUPFAM	SSF51126. Pectin_lyas_like. 1 hit.
PROSITE	PS00502. POLYGALACTURONASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q97M45_CLOAB

Accession

Primary (citable) accession number: Q97M45

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2001
Last sequence update:	October 1, 2001
Last modified:	December 14, 2011
This is version 74 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)