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Q97J51 (Y1435_CLOAB) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 75. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Uncharacterized RNA methyltransferase CA_C1435

EC=2.1.1.-
Gene names
Ordered Locus Names:CA_C1435
OrganismClostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) [Reference proteome] [HAMAP]
Taxonomic identifier272562 [NCBI]
Taxonomic lineageBacteriaFirmicutesClostridiaClostridialesClostridiaceaeClostridium

Protein attributes

Sequence length456 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 456456Uncharacterized RNA methyltransferase CA_C1435
PRO_0000161969

Regions

Domain3 – 6159TRAM

Sites

Active site4111Nucleophile By similarity
Metal binding741Iron-sulfur (4Fe-4S) By similarity
Metal binding801Iron-sulfur (4Fe-4S) By similarity
Metal binding831Iron-sulfur (4Fe-4S) By similarity
Metal binding1631Iron-sulfur (4Fe-4S) By similarity
Binding site2891S-adenosyl-L-methionine By similarity
Binding site3181S-adenosyl-L-methionine; via carbonyl oxygen By similarity
Binding site3391S-adenosyl-L-methionine By similarity
Binding site3841S-adenosyl-L-methionine By similarity

Sequences

Sequence LengthMass (Da)Tools
Q97J51 [UniParc].

Last modified October 1, 2001. Version 1.
Checksum: 2F163B07786725A0

FASTA45651,312
        10         20         30         40         50         60 
MKLMRKNETR EFLIEDIEFP AVGVAFYNDK KVYIKGAVPG QKVLARVSKV RREKIEAKLK 

        70         80         90        100        110        120 
EIVTNIPGAA QPKCPDFGVC GGCVHQFLPY EKQLEFKERE VLKLFKDAKI EGFEYLGILG 

       130        140        150        160        170        180 
SPEKEEYRNK MEYTFGDFVK GGELTLGMHA KNSGFSIVNT DKCNIVDEDF RIILKTVVEY 

       190        200        210        220        230        240 
FRKKDLPIYK VMQHVGYLRN LVVRKAKNTG EILIALVTTS QVDFDLTELT EILKSINYLG 

       250        260        270        280        290        300 
ELKGILHVIN DGLADMVRGD KIVTLFGQDY ITERILDLKF KISLFSFFQT NSKGAEKLYS 

       310        320        330        340        350        360 
EVLEFLGDVS NKTVFDLYCG TGTIGQLASK KAEKVIGIEL IEEAVEAAKE NTKLNNISNC 

       370        380        390        400        410        420 
SFIAGDVAKV ITEIKEKPDT IILDPPRPGV SPNAMKYVIK FNAPEIVYVS CNPKTLVNDL 

       430        440        450 
GVLRAYGYEV EKVKIVDMFP GTGHVETVVL LQRKII 

« Hide

References

[1]"Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum."
Noelling J., Breton G., Omelchenko M.V., Makarova K.S., Zeng Q., Gibson R., Lee H.M., Dubois J., Qiu D., Hitti J., Wolf Y.I., Tatusov R.L., Sabathe F., Doucette-Stamm L.A., Soucaille P., Daly M.J., Bennett G.N., Koonin E.V., Smith D.R.
J. Bacteriol. 183:4823-4838(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE001437 Genomic DNA. Translation: AAK79403.1.
PIRH97076.
RefSeqNP_348063.1. NC_003030.1.

3D structure databases

ProteinModelPortalQ97J51.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING272562.CA_C1435.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAK79403; AAK79403; CA_C1435.
GeneID1117618.
KEGGcac:CA_C1435.
PATRIC32037253. VBICloAce74127_1640.

Phylogenomic databases

eggNOGCOG2265.
HOGENOMHOG000029870.
KOK00599.
OMACEFIAGD.
OrthoDBEOG6V4GKM.
ProtClustDBCLSK882798.

Enzyme and pathway databases

BioCycCACE272562:GJIH-1484-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR001566. 23S_rRNA_MeTrfase_RlmD.
IPR012340. NA-bd_OB-fold.
IPR002792. TRAM_dom.
IPR010280. U5_MeTrfase_fam.
[Graphical view]
PfamPF05958. tRNA_U5-meth_tr. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR00479. rumA. 1 hit.
PROSITEPS51687. SAM_MT_RNA_M5U. 1 hit.
PS50926. TRAM. 1 hit.
PS01230. TRMA_1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameY1435_CLOAB
AccessionPrimary (citable) accession number: Q97J51
Entry history
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: October 1, 2001
Last modified: April 16, 2014
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families