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Q97J51

- Y1435_CLOAB

UniProt

Q97J51 - Y1435_CLOAB

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Protein
Uncharacterized RNA methyltransferase CA_C1435
Gene
CA_C1435
Organism
Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi74 – 741Iron-sulfur (4Fe-4S) By similarity
Metal bindingi80 – 801Iron-sulfur (4Fe-4S) By similarity
Metal bindingi83 – 831Iron-sulfur (4Fe-4S) By similarity
Metal bindingi163 – 1631Iron-sulfur (4Fe-4S) By similarity
Binding sitei289 – 2891S-adenosyl-L-methionine By similarity
Binding sitei318 – 3181S-adenosyl-L-methionine; via carbonyl oxygen By similarity
Binding sitei339 – 3391S-adenosyl-L-methionine By similarity
Binding sitei384 – 3841S-adenosyl-L-methionine By similarity
Active sitei411 – 4111Nucleophile By similarity

GO - Molecular functioni

  1. 4 iron, 4 sulfur cluster binding Source: UniProtKB-KW
  2. RNA binding Source: InterPro
  3. RNA methyltransferase activity Source: InterPro
  4. metal ion binding Source: UniProtKB-KW

GO - Biological processi

  1. RNA processing Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Methyltransferase, Transferase

Keywords - Ligandi

4Fe-4S, Iron, Iron-sulfur, Metal-binding, S-adenosyl-L-methionine

Enzyme and pathway databases

BioCyciCACE272562:GJIH-1484-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized RNA methyltransferase CA_C1435 (EC:2.1.1.-)
Gene namesi
Ordered Locus Names:CA_C1435
OrganismiClostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
Taxonomic identifieri272562 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesClostridiaceaeClostridium
ProteomesiUP000000814: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 456456Uncharacterized RNA methyltransferase CA_C1435
PRO_0000161969Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi272562.CA_C1435.

Structurei

3D structure databases

ProteinModelPortaliQ97J51.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini3 – 6159TRAM
Add
BLAST

Sequence similaritiesi

Contains 1 TRAM domain.

Phylogenomic databases

eggNOGiCOG2265.
HOGENOMiHOG000029870.
KOiK00599.
OMAiCGGCTYQ.
OrthoDBiEOG6V4GKM.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
3.40.50.150. 1 hit.
InterProiIPR001566. 23S_rRNA_MeTrfase_RlmD.
IPR012340. NA-bd_OB-fold.
IPR029063. SAM-dependent_MTases-like.
IPR002792. TRAM_dom.
IPR010280. U5_MeTrfase_fam.
[Graphical view]
PfamiPF05958. tRNA_U5-meth_tr. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
SSF53335. SSF53335. 1 hit.
TIGRFAMsiTIGR00479. rumA. 1 hit.
PROSITEiPS51687. SAM_MT_RNA_M5U. 1 hit.
PS50926. TRAM. 1 hit.
PS01230. TRMA_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q97J51-1 [UniParc]FASTAAdd to Basket

« Hide

MKLMRKNETR EFLIEDIEFP AVGVAFYNDK KVYIKGAVPG QKVLARVSKV    50
RREKIEAKLK EIVTNIPGAA QPKCPDFGVC GGCVHQFLPY EKQLEFKERE 100
VLKLFKDAKI EGFEYLGILG SPEKEEYRNK MEYTFGDFVK GGELTLGMHA 150
KNSGFSIVNT DKCNIVDEDF RIILKTVVEY FRKKDLPIYK VMQHVGYLRN 200
LVVRKAKNTG EILIALVTTS QVDFDLTELT EILKSINYLG ELKGILHVIN 250
DGLADMVRGD KIVTLFGQDY ITERILDLKF KISLFSFFQT NSKGAEKLYS 300
EVLEFLGDVS NKTVFDLYCG TGTIGQLASK KAEKVIGIEL IEEAVEAAKE 350
NTKLNNISNC SFIAGDVAKV ITEIKEKPDT IILDPPRPGV SPNAMKYVIK 400
FNAPEIVYVS CNPKTLVNDL GVLRAYGYEV EKVKIVDMFP GTGHVETVVL 450
LQRKII 456
Length:456
Mass (Da):51,312
Last modified:October 1, 2001 - v1
Checksum:i2F163B07786725A0
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE001437 Genomic DNA. Translation: AAK79403.1.
PIRiH97076.
RefSeqiNP_348063.1. NC_003030.1.
WP_010964744.1. NC_003030.1.

Genome annotation databases

EnsemblBacteriaiAAK79403; AAK79403; CA_C1435.
GeneIDi1117618.
KEGGicac:CA_C1435.
PATRICi32037253. VBICloAce74127_1640.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE001437 Genomic DNA. Translation: AAK79403.1 .
PIRi H97076.
RefSeqi NP_348063.1. NC_003030.1.
WP_010964744.1. NC_003030.1.

3D structure databases

ProteinModelPortali Q97J51.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 272562.CA_C1435.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAK79403 ; AAK79403 ; CA_C1435 .
GeneIDi 1117618.
KEGGi cac:CA_C1435.
PATRICi 32037253. VBICloAce74127_1640.

Phylogenomic databases

eggNOGi COG2265.
HOGENOMi HOG000029870.
KOi K00599.
OMAi CGGCTYQ.
OrthoDBi EOG6V4GKM.

Enzyme and pathway databases

BioCyci CACE272562:GJIH-1484-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
3.40.50.150. 1 hit.
InterProi IPR001566. 23S_rRNA_MeTrfase_RlmD.
IPR012340. NA-bd_OB-fold.
IPR029063. SAM-dependent_MTases-like.
IPR002792. TRAM_dom.
IPR010280. U5_MeTrfase_fam.
[Graphical view ]
Pfami PF05958. tRNA_U5-meth_tr. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
SSF53335. SSF53335. 1 hit.
TIGRFAMsi TIGR00479. rumA. 1 hit.
PROSITEi PS51687. SAM_MT_RNA_M5U. 1 hit.
PS50926. TRAM. 1 hit.
PS01230. TRMA_1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787.

Entry informationi

Entry nameiY1435_CLOAB
AccessioniPrimary (citable) accession number: Q97J51
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: October 1, 2001
Last modified: September 3, 2014
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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