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Protein
Submitted name:

DTDP-4-dehydrorhamnose reductase, rfbD ortholog

Gene

CA_C2315

Organism
Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei31NADCombined sources1
Binding sitei125NADCombined sources1
Binding sitei129NADCombined sources1
Binding sitei151NAD; via amide nitrogenCombined sources1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi11 – 12NADCombined sources2
Nucleotide bindingi36 – 37NADCombined sources2
Nucleotide bindingi60 – 62NADCombined sources3

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

NADCombined sources, Nucleotide-bindingCombined sources

Names & Taxonomyi

Protein namesi
Submitted name:
DTDP-4-dehydrorhamnose reductase, rfbD orthologImported
Gene namesi
Ordered Locus Names:CA_C2315Imported
OrganismiClostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)Imported
Taxonomic identifieri272562 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesClostridiaceaeClostridium
Proteomesi
  • UP000000814 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi272562.CA_C2315.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VL0X-ray2.05A/B/C1-280[»]
ProteinModelPortaliQ97GQ1.
SMRiQ97GQ1.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ97GQ1.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 278RmlD_sub_bindInterPro annotationAdd BLAST278

Phylogenomic databases

eggNOGiENOG4105DBZ. Bacteria.
COG1091. LUCA.
HOGENOMiHOG000227711.
KOiK00067.
OMAiCTAIAIR.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR005913. dTDP_dehydrorham_reduct.
IPR016040. NAD(P)-bd_dom.
IPR029903. RmlD-like-bd.
[Graphical view]
PANTHERiPTHR10491. PTHR10491. 1 hit.
PfamiPF04321. RmlD_sub_bind. 1 hit.
[Graphical view]
SUPFAMiSSF51735. SSF51735. 1 hit.
TIGRFAMsiTIGR01214. rmlD. 1 hit.

Sequencei

Sequence statusi: Complete.

Q97GQ1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKILITGANG QLGREIQKQL KGKNVEVIPT DVQDLDITNV LAVNKFFNEK
60 70 80 90 100
KPNVVINCAA HTAVDKCEEQ YDLAYKINAI GPKNLAAAAY SVGAEIVQIS
110 120 130 140 150
TDYVFDGEAK EPITEFDEVN PQSAYGKTKL EGENFVKALN PKYYIVRTAW
160 170 180 190 200
LYGDGNNFVK TMINLGKTHD ELKVVHDQVG TPTSTVDLAR VVLKVIDEKN
210 220 230 240 250
YGTFHCTCKG ICSWYDFAVE IFRLTGIDVK VTPCTTEEFP RPAKRPKYSV
260 270 280
LRNYMLELTT GDITREWKES LKEYIDLLQM
Length:280
Mass (Da):31,531
Last modified:October 1, 2001 - v1
Checksum:i3AD06CF66D2727D8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE001437 Genomic DNA. Translation: AAK80271.1.
PIRiD97185.
RefSeqiNP_348931.1. NC_003030.1.
WP_010965612.1. NC_003030.1.

Genome annotation databases

EnsemblBacteriaiAAK80271; AAK80271; CA_C2315.
GeneIDi1118498.
KEGGicac:CA_C2315.
PATRICi32038999. VBICloAce74127_2512.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE001437 Genomic DNA. Translation: AAK80271.1.
PIRiD97185.
RefSeqiNP_348931.1. NC_003030.1.
WP_010965612.1. NC_003030.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VL0X-ray2.05A/B/C1-280[»]
ProteinModelPortaliQ97GQ1.
SMRiQ97GQ1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272562.CA_C2315.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAK80271; AAK80271; CA_C2315.
GeneIDi1118498.
KEGGicac:CA_C2315.
PATRICi32038999. VBICloAce74127_2512.

Phylogenomic databases

eggNOGiENOG4105DBZ. Bacteria.
COG1091. LUCA.
HOGENOMiHOG000227711.
KOiK00067.
OMAiCTAIAIR.

Miscellaneous databases

EvolutionaryTraceiQ97GQ1.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR005913. dTDP_dehydrorham_reduct.
IPR016040. NAD(P)-bd_dom.
IPR029903. RmlD-like-bd.
[Graphical view]
PANTHERiPTHR10491. PTHR10491. 1 hit.
PfamiPF04321. RmlD_sub_bind. 1 hit.
[Graphical view]
SUPFAMiSSF51735. SSF51735. 1 hit.
TIGRFAMsiTIGR01214. rmlD. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ97GQ1_CLOAB
AccessioniPrimary (citable) accession number: Q97GQ1
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2001
Last sequence update: October 1, 2001
Last modified: November 2, 2016
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.