Beta-xylosidase, family 43 glycosyl hydrolase

Preferred order of sections

Names and origin

Protein names

Submitted name:
Beta-xylosidase, family 43 glycosyl hydrolase EMBL AAK81382.1

Gene names

Name:	xynD EMBL AAK81382.1
Ordered Locus Names:	CA_C3452

Organism

Clostridium acetobutylicum

Taxonomic identifier

1488 [NCBI]

Taxonomic lineage

Bacteria › Firmicutes › Clostridia › Clostridiales › Clostridiaceae › Clostridium

Protein attributes

Sequence length	533 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Ligand	Calcium PDB 1Y7B PDB 1YI7 Metal-binding PDB 1Y7B PDB 1YI7
Molecular function	Hydrolase EMBL AAK81382.1
Technical term	3D-structure PDB 1Y7B PDB 1YI7 Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Sites

Metal binding

331

1

Calcium; via carbonyl oxygen PDB 1Y7B PDB 1YI7

Metal binding

360

1

Calcium; via carbonyl oxygen PDB 1Y7B PDB 1YI7

Metal binding

526

1

Calcium PDB 1Y7B PDB 1YI7

Sequences

Sequence

Length

Mass (Da)

Tools

Q97DM1 [UniParc].

Last modified October 1, 2001. Version 1.
Checksum: 242B3E6DE1688409
Show »

FASTA

533

61,247

        10         20         30         40         50         60 
MIKNPILRGF NPDPSICRAD TDYYIATSTF EWFPGVQIHH SKDLVNWHLV AHPLNRTSLL 

        70         80         90        100        110        120 
DMKGNPNSGG IWAPDLSYHD GKFWLIYTDV KVTDGMWKDC HNYLTTCESV DGVWSDPITL 

       130        140        150        160        170        180 
NGSGFDASLF HDNDGKKYLV NMYWDQRTYN HNFYGIVLQE YSDKEKKLIG KAKIIYKGTD 

       190        200        210        220        230        240 
IKYTEGPHIY HIGDYYYLFT AEGGTTYEHS ETVARSKNID GPYEIDPEYP LLTSWHDPRN 

       250        260        270        280        290        300 
SLQKCGHASL VHTHTDEWYL AHLVGRPLPV GNQPVLEQRG YCPLGRETSI QRIEWVDNWP 

       310        320        330        340        350        360 
RVVGGKQGSV NVEAPKIPEV KWEKTYDEKD NFDSDKLNIN FQSLRIPLTE NIASLKAKKG 

       370        380        390        400        410        420 
NLRLYGKESL TSTFTQAFIA RRWQSFKFDA STSVSFSPDT FQQAAGLTCY YNTENWSTIQ 

       430        440        450        460        470        480 
VTWNEDKGRV IDIVCCDNFH FDMPLKSNVI PIPKDVEYIH LKVEVRVETY QYSYSFDGIN 

       490        500        510        520        530 
WSKVPAIFES RKLSDDYVQG GGFFTGAFVG INCIDITGNN KPADFDYFCY KEL

« Hide

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum." Noelling J., Breton G., Omelchenko M.V., Makarova K.S., Zeng Q., Gibson R., Lee H.M., Dubois J., Qiu D., Hitti J., Wolf Y.I., Tatusov R.L., Sabathe F., Doucette-Stamm L.A., Soucaille P., Daly M.J., Bennett G.N., Koonin E.V., Smith D.R. J. Bacteriol. 183:4823-4838(2001) [PubMed: 11466286] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787.
[2]	"Crystal structure of beta-xylosidase from clostridium acetobutylicum." New York Structural Genomics Research Consortium (NYSGRC) Teplyakov A., Fedorov E., Gilliland G.L., Almo S.C. Submitted (JAN-2005) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.90 ANGSTROMS) OF 2-532 IN COMPLEX WITH CALCIUM.
[3]	"Crystal structure of beta-xylosidase from Clostridium acetobutylicum." New York Structural Genomics Research Consortium (NYSGRC) Teplyakov A., Fedorov E., Gilliland G.L., Almo S.C. Submitted (DEC-2004) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.60 ANGSTROMS) OF 2-532 IN COMPLEX WITH CALCIUM.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AE001437 Genomic DNA. Translation: AAK81382.1.

PIR

C97324.

RefSeq

NP_350042.1. NC_003030.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1Y7B	X-ray	1.60	A/B/C/D	2-532	[»]
1YI7	X-ray	1.90	A/B/C/D	2-532	[»]

ProteinModelPortal

Q97DM1.

SMR

Q97DM1. Positions 1-532.

ModBase

Search...

Protein family/group databases

CAZy

GH43. Glycoside Hydrolase Family 43.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

GeneID

1119634.

GenomeReviews

Gene locus CA_C3452 in contig AE001437_GR.

KEGG

cac:CA_C3452.

NMPDR

fig|272562.1.peg.3571.

PATRIC

32041345. VBICloAce74127_3636.

Phylogenomic databases

HOGENOM

HBG347235.

OMA

IGSWFEQ.

ProtClustDB

CLSK883496.

Family and domain databases

InterPro

IPR008985. ConA-like_lec_gl.
IPR013320. ConA-like_subgrp.
IPR006710. Glyco_hydro_43.
IPR023296. Glyco_hydro_43_beta-prop.
[Graphical view]

Gene3D

G3DSA:2.60.120.200. ConA_like_subgrp. 1 hit.
G3DSA:2.115.10.20. Glyco_hydro_43_beta-prop. 1 hit.

KO

K01198.

PANTHER

PTHR22925. Glyco_hydro_43. 1 hit.

Pfam

PF04616. Glyco_hydro_43. 1 hit.
[Graphical view]

SUPFAM

SSF49899. ConA_like_lec_gl. 1 hit.
SSF75005. Glyco_hydro_43_beta-prop. 1 hit.

ProtoNet

Search...

Entry information

Entry name

Q97DM1_CLOAB

Accession

Primary (citable) accession number: Q97DM1

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2001
Last sequence update:	October 1, 2001
Last modified:	December 14, 2011
This is version 56 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)