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Protein
Submitted name:

Beta-xylosidase, family 43 glycosyl hydrolase

Gene

xynD

Organism
Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi331 – 3311Calcium; via carbonyl oxygenCombined sources
Metal bindingi360 – 3601Calcium; via carbonyl oxygenCombined sources
Metal bindingi526 – 5261CalciumCombined sources

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotation, Hydrolase

Keywords - Ligandi

CalciumCombined sources, Metal-bindingCombined sources

Enzyme and pathway databases

BioCyciCACE272562:GJIH-3549-MONOMER.

Protein family/group databases

CAZyiGH43. Glycoside Hydrolase Family 43.

Names & Taxonomyi

Protein namesi
Submitted name:
Beta-xylosidase, family 43 glycosyl hydrolaseImported
Gene namesi
Name:xynDImported
Ordered Locus Names:CA_C3452Imported
OrganismiClostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)Imported
Taxonomic identifieri272562 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesClostridiaceaeClostridium
Proteomesi
  • UP000000814 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi272562.CA_C3452.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1Y7BX-ray1.60A/B/C/D2-532[»]
1YI7X-ray1.90A/B/C/D2-532[»]
ProteinModelPortaliQ97DM1.
SMRiQ97DM1. Positions 1-532.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ97DM1.

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 43 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105DSG. Bacteria.
COG3507. LUCA.
HOGENOMiHOG000112982.
KOiK01198.
OMAiDERQFAG.
OrthoDBiEOG6QCD84.

Family and domain databases

Gene3Di2.115.10.20. 1 hit.
2.60.120.200. 1 hit.
InterProiIPR013320. ConA-like_dom.
IPR006710. Glyco_hydro_43.
IPR023296. Glyco_hydro_beta-prop.
[Graphical view]
PANTHERiPTHR22925. PTHR22925. 1 hit.
PfamiPF04616. Glyco_hydro_43. 1 hit.
[Graphical view]
SUPFAMiSSF49899. SSF49899. 1 hit.
SSF75005. SSF75005. 1 hit.

Sequencei

Sequence statusi: Complete.

Q97DM1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIKNPILRGF NPDPSICRAD TDYYIATSTF EWFPGVQIHH SKDLVNWHLV
60 70 80 90 100
AHPLNRTSLL DMKGNPNSGG IWAPDLSYHD GKFWLIYTDV KVTDGMWKDC
110 120 130 140 150
HNYLTTCESV DGVWSDPITL NGSGFDASLF HDNDGKKYLV NMYWDQRTYN
160 170 180 190 200
HNFYGIVLQE YSDKEKKLIG KAKIIYKGTD IKYTEGPHIY HIGDYYYLFT
210 220 230 240 250
AEGGTTYEHS ETVARSKNID GPYEIDPEYP LLTSWHDPRN SLQKCGHASL
260 270 280 290 300
VHTHTDEWYL AHLVGRPLPV GNQPVLEQRG YCPLGRETSI QRIEWVDNWP
310 320 330 340 350
RVVGGKQGSV NVEAPKIPEV KWEKTYDEKD NFDSDKLNIN FQSLRIPLTE
360 370 380 390 400
NIASLKAKKG NLRLYGKESL TSTFTQAFIA RRWQSFKFDA STSVSFSPDT
410 420 430 440 450
FQQAAGLTCY YNTENWSTIQ VTWNEDKGRV IDIVCCDNFH FDMPLKSNVI
460 470 480 490 500
PIPKDVEYIH LKVEVRVETY QYSYSFDGIN WSKVPAIFES RKLSDDYVQG
510 520 530
GGFFTGAFVG INCIDITGNN KPADFDYFCY KEL
Length:533
Mass (Da):61,247
Last modified:October 1, 2001 - v1
Checksum:i242B3E6DE1688409
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE001437 Genomic DNA. Translation: AAK81382.1.
PIRiC97324.
RefSeqiNP_350042.1. NC_003030.1.
WP_010966722.1. NC_003030.1.

Genome annotation databases

EnsemblBacteriaiAAK81382; AAK81382; CA_C3452.
GeneIDi1119634.
KEGGicac:CA_C3452.
PATRICi32041345. VBICloAce74127_3636.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE001437 Genomic DNA. Translation: AAK81382.1.
PIRiC97324.
RefSeqiNP_350042.1. NC_003030.1.
WP_010966722.1. NC_003030.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1Y7BX-ray1.60A/B/C/D2-532[»]
1YI7X-ray1.90A/B/C/D2-532[»]
ProteinModelPortaliQ97DM1.
SMRiQ97DM1. Positions 1-532.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272562.CA_C3452.

Protein family/group databases

CAZyiGH43. Glycoside Hydrolase Family 43.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAK81382; AAK81382; CA_C3452.
GeneIDi1119634.
KEGGicac:CA_C3452.
PATRICi32041345. VBICloAce74127_3636.

Phylogenomic databases

eggNOGiENOG4105DSG. Bacteria.
COG3507. LUCA.
HOGENOMiHOG000112982.
KOiK01198.
OMAiDERQFAG.
OrthoDBiEOG6QCD84.

Enzyme and pathway databases

BioCyciCACE272562:GJIH-3549-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ97DM1.

Family and domain databases

Gene3Di2.115.10.20. 1 hit.
2.60.120.200. 1 hit.
InterProiIPR013320. ConA-like_dom.
IPR006710. Glyco_hydro_43.
IPR023296. Glyco_hydro_beta-prop.
[Graphical view]
PANTHERiPTHR22925. PTHR22925. 1 hit.
PfamiPF04616. Glyco_hydro_43. 1 hit.
[Graphical view]
SUPFAMiSSF49899. SSF49899. 1 hit.
SSF75005. SSF75005. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787Imported.
  2. "Crystal structure of beta-xylosidase from Clostridium acetobutylicum."
    New York Structural Genomics Research Consortium (NYSGRC)
    Teplyakov A., Fedorov E., Gilliland G.L., Almo S.C.
    Submitted (DEC-2004) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.60 ANGSTROMS) OF 2-532 IN COMPLEX WITH CALCIUM.
  3. "Crystal structure of beta-xylosidase from clostridium acetobutylicum."
    New York Structural Genomics Research Consortium (NYSGRC)
    Teplyakov A., Fedorov E., Gilliland G.L., Almo S.C.
    Submitted (JAN-2005) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.90 ANGSTROMS) OF 2-532 IN COMPLEX WITH CALCIUM.

Entry informationi

Entry nameiQ97DM1_CLOAB
AccessioniPrimary (citable) accession number: Q97DM1
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2001
Last sequence update: October 1, 2001
Last modified: March 16, 2016
This is version 90 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.