Q97BW0 (RL6_THEVO) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
50S ribosomal protein L6

Gene names

Name:	rpl6
Ordered Locus Names:	TV0345
ORF Names:	TVG0340711

Organism

Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) [Complete proteome] [HAMAP]

Taxonomic identifier

273116 [NCBI]

Taxonomic lineage

cellular organisms › Archaea › Euryarchaeota › Thermoplasmata › Thermoplasmatales › Thermoplasmataceae › Thermoplasma › Thermoplasma volcanium

Protein attributes

Sequence length	178 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center By similarity. HAMAP-Rule MF_01365
Subunit structure	Part of the 50S ribosomal subunit By similarity. HAMAP-Rule MF_01365
Sequence similarities	Belongs to the ribosomal protein L6P family.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 178	178	50S ribosomal protein L6 HAMAP-Rule MF_01365		PRO_0000261000

Sequences

	Sequence		Length	Mass (Da)
	Q97BW0 [UniParc]. Last modified October 1, 2001. Version 1. Checksum: BDC6CEE91806B332	FASTA	178	20,025
	10 20 30 40 50 60 MIKWEEASVI EIPKDVKVGL SGTMLSMTFG NKKLEKKFAD NYVRLLVEDN KIKIVKSKNN 70 80 90 100 110 120 SRERGIVGTW ASEISNMVKG LKEGFQYEMK IDYSHFPMRV SVKGKTVVIE NFFGERSPRT 130 140 150 160 170 AEIVGETQVS VKGDRLFLNG PSKKDVGETA ANIERATIIK GFDPRVFQDG IYLISKGE

References

[1]

"Archaeal adaptation to higher temperatures revealed by genomic sequence of Thermoplasma volcanium." Kawashima T., Amano N., Koike H., Makino S., Higuchi S., Kawashima-Ohya Y., Watanabe K., Yamazaki M., Kanehori K., Kawamoto T., Nunoshiba T., Yamamoto Y., Aramaki H., Makino K., Suzuki M. Proc. Natl. Acad. Sci. U.S.A. 97:14257-14262(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BA000011 Genomic DNA. Translation: BAB59487.1.
RefSeq	NP_110860.1. NC_002689.2.
3D structure databases
ProteinModelPortal	Q97BW0.
ModBase	Search...
Protein-protein interaction databases
STRING	273116.TVN0341.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	BAB59487; BAB59487; BAB59487.
GeneID	1440857.
KEGG	tvo:TVN0341.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0097.
KO	K02933.
OMA	HFPMRVS.
ProtClustDB	PRK05518.
Enzyme and pathway databases
BioCyc	TVOL273116:GC31-353-MONOMER.
Family and domain databases
Gene3D	3.90.930.12. 2 hits.
HAMAP	MF_01365_A. Ribosomal_L6_A.
InterPro	IPR000702. Ribosomal_L6. IPR020040. Ribosomal_L6_a/b-dom. IPR019907. Ribosomal_L6P_arc. [Graphical view]
PANTHER	PTHR11655. PTHR11655. 1 hit. PTHR11655:SF1. PTHR11655:SF1. 1 hit.
Pfam	PF00347. Ribosomal_L6. 2 hits. [Graphical view]
PIRSF	PIRSF002162. Ribosomal_L6. 1 hit.
SUPFAM	SSF56053. Ribosomal_L6. 2 hits.
TIGRFAMs	TIGR03653. arch_L6P. 1 hit.
PROSITE	PS00700. RIBOSOMAL_L6_2. False negative. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RL6_THEVO

Accession

Primary (citable) accession number: Q97BW0

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 28, 2006
Last sequence update:	October 1, 2001
Last modified:	May 29, 2013
This is version 64 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program