Q975J6 (RL6_SULTO) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
50S ribosomal protein L6P

Gene names

Name:	rpl6p
Ordered Locus Names:	STK_04180

Organism

Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) [Complete proteome] [HAMAP]

Taxonomic identifier

273063 [NCBI]

Taxonomic lineage

cellular organisms › Archaea › Crenarchaeota › Thermoprotei › Sulfolobales › Sulfolobaceae › Sulfolobus › Sulfolobus tokodaii

Protein attributes

Sequence length	186 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center By similarity. HAMAP-Rule MF_01365
Subunit structure	Part of the 50S ribosomal subunit By similarity.
Sequence similarities	Belongs to the ribosomal protein L6P family.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 186	186	50S ribosomal protein L6P HAMAP-Rule MF_01365		PRO_0000260998

Sequences

	Sequence		Length	Mass (Da)
	Q975J6 [UniParc]. Last modified December 1, 2001. Version 1. Checksum: FD56D0372E1723A7	FASTA	186	21,123
	10 20 30 40 50 60 MKAVHLYEEI EIPQGINVNI EGMKIKVKGP KGEIEKDFSH ISGIEIRKED NKIVVETTFA 70 80 90 100 110 120 DRRKKAQFYS IIAHIENMFT GVTKGYRYYL KIIYTHFPVT VKVSGNEVQI QNLIGEKNIR 130 140 150 160 170 180 RAKIMTGVKV NVKGEDIIVE GQDIEKVGQT AANIELASKI TGYDRRVFAD GIYIYKKEVI GSEQTD

References

[1]

"Complete genome sequence of an aerobic thermoacidophilic Crenarchaeon, Sulfolobus tokodaii strain7." Kawarabayasi Y., Hino Y., Horikawa H., Jin-no K., Takahashi M., Sekine M., Baba S., Ankai A., Kosugi H., Hosoyama A., Fukui S., Nagai Y., Nishijima K., Otsuka R., Nakazawa H., Takamiya M., Kato Y., Yoshizawa T. , Tanaka T., Kudoh Y., Yamazaki J., Kushida N., Oguchi A., Aoki K., Masuda S., Yanagii M., Nishimura M., Yamagishi A., Oshima T., Kikuchi H. DNA Res. 8:123-140(2001) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 16993 / JCM 10545 / NBRC 100140 / 7.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BA000023 Genomic DNA. Translation: BAB65404.1.
RefSeq	NP_376295.1. NC_003106.2.
3D structure databases
HSSP	HSSP built from PDB template 1VQO based on UniProtKB P14135.
ProteinModelPortal	Q975J6.
ModBase	Search...
Protein-protein interaction databases
STRING	273063.ST0418.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	BAB65404; BAB65404; STK_04180.
GeneID	1458351.
KEGG	sto:ST0418.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0097.
HOGENOM	HOG000039905.
KO	K02933.
OMA	AVRTVCS.
ProtClustDB	PRK05518.
Family and domain databases
Gene3D	3.90.930.12. 2 hits.
HAMAP	MF_01365_A. Ribosomal_L6_A.
InterPro	IPR000702. Ribosomal_L6. IPR020040. Ribosomal_L6_a/b-dom. IPR002359. Ribosomal_L6_CS2. IPR019907. Ribosomal_L6P_arc. [Graphical view]
PANTHER	PTHR11655. PTHR11655. 1 hit. PTHR11655:SF1. PTHR11655:SF1. 1 hit.
Pfam	PF00347. Ribosomal_L6. 2 hits. [Graphical view]
PIRSF	PIRSF002162. Ribosomal_L6. 1 hit.
SUPFAM	SSF56053. Ribosomal_L6. 2 hits.
TIGRFAMs	TIGR03653. arch_L6P. 1 hit.
PROSITE	PS00700. RIBOSOMAL_L6_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RL6_SULTO

Accession

Primary (citable) accession number: Q975J6

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 28, 2006
Last sequence update:	December 1, 2001
Last modified:	May 1, 2013
This is version 69 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program