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Protein

30S ribosomal protein S4e

Gene

rps4e

Organism
Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciSTOK273063:GJC7-490-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S4e
Gene namesi
Name:rps4e
Ordered Locus Names:STK_04210
OrganismiSulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
Taxonomic identifieri273063 [NCBI]
Taxonomic lineageiArchaeaCrenarchaeotaThermoproteiSulfolobalesSulfolobaceaeSulfolobus
Proteomesi
  • UP000001015 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 24324330S ribosomal protein S4ePRO_0000130864Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi273063.ST0421.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini37 – 9963S4 RNA-bindingAdd
BLAST

Sequence similaritiesi

Belongs to the ribosomal protein S4e family.Curated
Contains 1 S4 RNA-binding domain.Curated

Phylogenomic databases

eggNOGiarCOG04093. Archaea.
COG1471. LUCA.
HOGENOMiHOG000231324.
KOiK02987.
OMAiHIQLNLH.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
HAMAPiMF_00485. Ribosomal_S4e.
InterProiIPR000876. Ribosomal_S4e.
IPR013845. Ribosomal_S4e_central_region.
IPR013843. Ribosomal_S4e_N.
IPR002942. S4_RNA-bd.
[Graphical view]
PANTHERiPTHR11581. PTHR11581. 1 hit.
PfamiPF00900. Ribosomal_S4e. 1 hit.
PF08071. RS4NT. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
PIRSFiPIRSF002116. Ribosomal_S4. 1 hit.
ProDomiPD002667. Ribosomal_S4e_central. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00363. S4. 1 hit.
[Graphical view]
PROSITEiPS50889. S4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q975J2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAHITRFEAP WFLNLSKKEY KWTIRANPGP HKLSESIPLA LLLKHYLNVA
60 70 80 90 100
ETTREAKRLV VEGKIMVDGR VRKDYKFPVG LMDVISIPSS DLYFRIVPDN
110 120 130 140 150
IKYLMPVKIS KEDAKYKFVR IVNKTTNKNG NIQLNLEDGR NILIPKEKVP
160 170 180 190 200
EMNYPTLTTL KIEIPSQNII KSYELSEGKY AIIIGGRNVG LHGVIKTIQY
210 220 230 240
AKYKKRKYSI VTIEQKNGES VQTNLQNVMV IGDSEIDPNV GVR
Length:243
Mass (Da):27,800
Last modified:July 5, 2004 - v2
Checksum:i28555D56262E9B41
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000023 Genomic DNA. Translation: BAK54273.1.
RefSeqiWP_010978391.1. NC_003106.2.

Genome annotation databases

EnsemblBacteriaiBAK54273; BAK54273; STK_04210.
GeneIDi1458355.
KEGGisto:STK_04210.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000023 Genomic DNA. Translation: BAK54273.1.
RefSeqiWP_010978391.1. NC_003106.2.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi273063.ST0421.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAK54273; BAK54273; STK_04210.
GeneIDi1458355.
KEGGisto:STK_04210.

Phylogenomic databases

eggNOGiarCOG04093. Archaea.
COG1471. LUCA.
HOGENOMiHOG000231324.
KOiK02987.
OMAiHIQLNLH.

Enzyme and pathway databases

BioCyciSTOK273063:GJC7-490-MONOMER.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
HAMAPiMF_00485. Ribosomal_S4e.
InterProiIPR000876. Ribosomal_S4e.
IPR013845. Ribosomal_S4e_central_region.
IPR013843. Ribosomal_S4e_N.
IPR002942. S4_RNA-bd.
[Graphical view]
PANTHERiPTHR11581. PTHR11581. 1 hit.
PfamiPF00900. Ribosomal_S4e. 1 hit.
PF08071. RS4NT. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
PIRSFiPIRSF002116. Ribosomal_S4. 1 hit.
ProDomiPD002667. Ribosomal_S4e_central. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00363. S4. 1 hit.
[Graphical view]
PROSITEiPS50889. S4. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 16993 / JCM 10545 / NBRC 100140 / 7.

Entry informationi

Entry nameiRS4E_SULTO
AccessioniPrimary (citable) accession number: Q975J2
Secondary accession number(s): F9VMX6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 5, 2004
Last sequence update: July 5, 2004
Last modified: December 9, 2015
This is version 80 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.