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Protein

Replication factor C small subunit

Gene

rfcS

Organism
Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA.UniRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi47 – 548ATPUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

DNA replication

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciSTOK273063:GJC7-553-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Replication factor C small subunitUniRule annotation
Short name:
RFC small subunitUniRule annotation
Alternative name(s):
Clamp loader small subunitUniRule annotation
Gene namesi
Name:rfcSUniRule annotation
Ordered Locus Names:STK_04750
OrganismiSulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
Taxonomic identifieri273063 [NCBI]
Taxonomic lineageiArchaeaCrenarchaeotaThermoproteiSulfolobalesSulfolobaceaeSulfolobus
Proteomesi
  • UP000001015 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 327327Replication factor C small subunitPRO_0000135985Add
BLAST

Interactioni

Subunit structurei

Heteromultimer composed of small subunits (RfcS) and large subunits (RfcL).UniRule annotation

Protein-protein interaction databases

STRINGi273063.ST0475.

Structurei

3D structure databases

ProteinModelPortaliQ975D3.
SMRiQ975D3. Positions 9-322.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the activator 1 small subunits family. RfcS subfamily.UniRule annotation

Phylogenomic databases

eggNOGiarCOG00469. Archaea.
COG0470. LUCA.
HOGENOMiHOG000224155.
KOiK04801.
OMAiTQIYGFV.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
HAMAPiMF_01509. RfcS. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR003959. ATPase_AAA_core.
IPR008921. DNA_pol3_clamp-load_cplx_C.
IPR027417. P-loop_NTPase.
IPR023748. Rep_factor-C_ssu_arc.
IPR013748. Rep_factorC_C.
[Graphical view]
PfamiPF00004. AAA. 1 hit.
PF08542. Rep_fac_C. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMiSSF48019. SSF48019. 1 hit.
SSF52540. SSF52540. 1 hit.

Sequencei

Sequence statusi: Complete.

Q975D3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSLEEEILWA EKYRPRSLDD IVNQKDIVER LKRFVKDKNM PHLLFSGPPG
60 70 80 90 100
TGKTTAALAL VHDLYGDNYR QYFLELNASD ERGIDVIRNK VKEFARTVAG
110 120 130 140 150
GNVPFKVVLL DEADNMTADA QQALRRTMEL YTETTRFILA CNYLSKIIEP
160 170 180 190 200
IQSRTALFRF YPLKKEDVVA RLAYIAKNEK VEYDQKALET IYDITQGDMR
210 220 230 240 250
KAINILQASS VYGKVTVEAV YKVLGLAQPK EIREMIMLAL QGNFLKAREK
260 270 280 290 300
LRELLVNYGL SGEDIIKQIH REVTGNEINI PDDLKVLLVD YIGEVEYRIM
310 320
EGADDEIQLN ALLAKLAVYG EKYLKGK
Length:327
Mass (Da):37,389
Last modified:December 1, 2001 - v1
Checksum:iAE24CA9F471499B4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000023 Genomic DNA. Translation: BAK54297.1.
RefSeqiWP_010978451.1. NC_003106.2.

Genome annotation databases

EnsemblBacteriaiBAK54297; BAK54297; STK_04750.
GeneIDi1458417.
KEGGisto:STK_04750.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000023 Genomic DNA. Translation: BAK54297.1.
RefSeqiWP_010978451.1. NC_003106.2.

3D structure databases

ProteinModelPortaliQ975D3.
SMRiQ975D3. Positions 9-322.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi273063.ST0475.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAK54297; BAK54297; STK_04750.
GeneIDi1458417.
KEGGisto:STK_04750.

Phylogenomic databases

eggNOGiarCOG00469. Archaea.
COG0470. LUCA.
HOGENOMiHOG000224155.
KOiK04801.
OMAiTQIYGFV.

Enzyme and pathway databases

BioCyciSTOK273063:GJC7-553-MONOMER.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
HAMAPiMF_01509. RfcS. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR003959. ATPase_AAA_core.
IPR008921. DNA_pol3_clamp-load_cplx_C.
IPR027417. P-loop_NTPase.
IPR023748. Rep_factor-C_ssu_arc.
IPR013748. Rep_factorC_C.
[Graphical view]
PfamiPF00004. AAA. 1 hit.
PF08542. Rep_fac_C. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMiSSF48019. SSF48019. 1 hit.
SSF52540. SSF52540. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRFCS_SULTO
AccessioniPrimary (citable) accession number: Q975D3
Secondary accession number(s): F9VN00
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 16, 2004
Last sequence update: December 1, 2001
Last modified: September 7, 2016
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.