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Protein

tRNA-splicing ligase RtcB

Gene

rtcB

Organism
Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Cofactori

Mn2+UniRule annotationNote: Binds 2 manganese ions per subunit.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLigaseUniRule annotation
LigandManganeseUniRule annotation, Metal-bindingUniRule annotation

Enzyme and pathway databases

BioCyciSTOK273063:G1G3D-1470-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
tRNA-splicing ligase RtcBUniRule annotation (EC:6.5.1.-UniRule annotation)
Gene namesi
Name:rtcBUniRule annotation
Synonyms:ST1292Imported
Ordered Locus Names:STK_12920Imported
OrganismiSulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)Imported
Taxonomic identifieri273063 [NCBI]
Taxonomic lineageiArchaeaCrenarchaeotaThermoproteiSulfolobalesSulfolobaceaeSulfolobus
Proteomesi
  • UP000001015 Componenti: Chromosome

Interactioni

Subunit structurei

Monomer.UniRule annotation

Protein-protein interaction databases

STRINGi273063.ST1292

Structurei

3D structure databases

ProteinModelPortaliQ971T4
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the RtcB family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04246 Archaea
COG1690 LUCA
HOGENOMiHOG000220065
KOiK14415
OMAiYDVAHNV
OrthoDBiPOG093Z01O0

Family and domain databases

Gene3Di3.90.1860.10, 1 hit
InterProiView protein in InterPro
IPR001233 RtcB
IPR036025 RtcB-like_sf
PANTHERiPTHR11118 PTHR11118, 1 hit
PfamiView protein in Pfam
PF01139 RtcB, 1 hit
SUPFAMiSSF103365 SSF103365, 1 hit

Sequencei

Sequence statusi: Complete.

Q971T4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSQVTIKRVN TYEWRIDKGT QECMKVPVTV FADDVLIEKM KQDLTLKQAM
60 70 80 90 100
NVACLQGVQE SVYVLPDGHQ GYGFPIGGIA ATAIDEEGVV SPGGIGYDIN
110 120 130 140 150
CGVRLLRTNL DYKDVKDKLR DLVEEIYRNV PSGVGSEGKV KLSFQQLDNV
160 170 180 190 200
LAEGVRWAVD NGYGWEKDME HIEQHGSWDL ADPSKVSPIA KQRGHTQLGT
210 220 230 240 250
LGAGNHFLEI QVVDKIYDPE VAKALGITHE GQVTVMVHTG SRGLGHQVAS
260 270 280 290 300
DYLQIMERAM KKYNITVPDR ELAAIPFNTR EAQDYIHAMA SAANFAWTNR
310 320 330 340 350
QMISHWVRES FGKVFHVDPE KLDLSIIYDV AHNIAKIEEY DINGKRKKVL
360 370 380 390 400
VHRKGATRAF PPGSPEIPVD YRNIGQVVLI PGSMGTASYV MVGIPEGRRT
410 420 430 440 450
WYTAPHGAGR WMSREAAVRN YPVNSVVQNL EQKGIVIRAA TRRVVSEEAP
460 470 480
GAYKDVDRVA KVAHEVKIAK LVVRLRPIGV TKG
Length:483
Mass (Da):53,643
Last modified:December 1, 2001 - v1
Checksum:i822DC9B8DCF6ECEF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000023 Genomic DNA Translation: BAB66336.1
RefSeqiWP_010979314.1, NC_003106.2

Genome annotation databases

EnsemblBacteriaiBAB66336; BAB66336; STK_12920
GeneIDi1459294
KEGGisto:STK_12920
PATRICifig|273063.9.peg.1453

Similar proteinsi

Entry informationi

Entry nameiQ971T4_SULTO
AccessioniPrimary (citable) accession number: Q971T4
Entry historyiIntegrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: December 1, 2001
Last modified: March 28, 2018
This is version 74 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health