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Protein

tRNA-splicing ligase RtcB

Gene

rtcB

Organism
Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Cofactori

Mn2+UniRule annotationNote: Binds 2 manganese ions per subunit.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotation

Keywords - Ligandi

ManganeseUniRule annotation, Metal-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
tRNA-splicing ligase RtcBUniRule annotation (EC:6.5.1.-UniRule annotation)
Gene namesi
Name:rtcBUniRule annotation
Ordered Locus Names:STK_12920Imported
OrganismiSulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)Imported
Taxonomic identifieri273063 [NCBI]
Taxonomic lineageiArchaeaCrenarchaeotaThermoproteiSulfolobalesSulfolobaceaeSulfolobus
Proteomesi
  • UP000001015 Componenti: Chromosome

Interactioni

Subunit structurei

Monomer.UniRule annotation

Protein-protein interaction databases

STRINGi273063.ST1292.

Structurei

3D structure databases

ProteinModelPortaliQ971T4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the RtcB family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04246. Archaea.
COG1690. LUCA.
HOGENOMiHOG000220065.
KOiK14415.
OMAiYDVAHNV.

Family and domain databases

InterProiIPR001233. RtcB.
[Graphical view]
PANTHERiPTHR11118. PTHR11118. 1 hit.
PfamiPF01139. RtcB. 1 hit.
[Graphical view]
SUPFAMiSSF103365. SSF103365. 1 hit.

Sequencei

Sequence statusi: Complete.

Q971T4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSQVTIKRVN TYEWRIDKGT QECMKVPVTV FADDVLIEKM KQDLTLKQAM
60 70 80 90 100
NVACLQGVQE SVYVLPDGHQ GYGFPIGGIA ATAIDEEGVV SPGGIGYDIN
110 120 130 140 150
CGVRLLRTNL DYKDVKDKLR DLVEEIYRNV PSGVGSEGKV KLSFQQLDNV
160 170 180 190 200
LAEGVRWAVD NGYGWEKDME HIEQHGSWDL ADPSKVSPIA KQRGHTQLGT
210 220 230 240 250
LGAGNHFLEI QVVDKIYDPE VAKALGITHE GQVTVMVHTG SRGLGHQVAS
260 270 280 290 300
DYLQIMERAM KKYNITVPDR ELAAIPFNTR EAQDYIHAMA SAANFAWTNR
310 320 330 340 350
QMISHWVRES FGKVFHVDPE KLDLSIIYDV AHNIAKIEEY DINGKRKKVL
360 370 380 390 400
VHRKGATRAF PPGSPEIPVD YRNIGQVVLI PGSMGTASYV MVGIPEGRRT
410 420 430 440 450
WYTAPHGAGR WMSREAAVRN YPVNSVVQNL EQKGIVIRAA TRRVVSEEAP
460 470 480
GAYKDVDRVA KVAHEVKIAK LVVRLRPIGV TKG
Length:483
Mass (Da):53,643
Last modified:December 1, 2001 - v1
Checksum:i822DC9B8DCF6ECEF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000023 Genomic DNA. Translation: BAB66336.1.
RefSeqiWP_010979314.1. NC_003106.2.

Genome annotation databases

EnsemblBacteriaiBAB66336; BAB66336; STK_12920.
GeneIDi1459294.
KEGGisto:STK_12920.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000023 Genomic DNA. Translation: BAB66336.1.
RefSeqiWP_010979314.1. NC_003106.2.

3D structure databases

ProteinModelPortaliQ971T4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi273063.ST1292.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAB66336; BAB66336; STK_12920.
GeneIDi1459294.
KEGGisto:STK_12920.

Phylogenomic databases

eggNOGiarCOG04246. Archaea.
COG1690. LUCA.
HOGENOMiHOG000220065.
KOiK14415.
OMAiYDVAHNV.

Family and domain databases

InterProiIPR001233. RtcB.
[Graphical view]
PANTHERiPTHR11118. PTHR11118. 1 hit.
PfamiPF01139. RtcB. 1 hit.
[Graphical view]
SUPFAMiSSF103365. SSF103365. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ971T4_SULTO
AccessioniPrimary (citable) accession number: Q971T4
Entry historyi
Integrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: December 1, 2001
Last modified: November 2, 2016
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.