Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

DNA repair helicase XPD

Gene

xpd

Organism
Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

HelicaseImported, Hydrolase

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciSTOK273063:GJC7-1451-MONOMER.
BRENDAi3.6.4.12. 6166.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA repair helicase XPDImported (EC:3.6.4.12Imported)
Gene namesi
Name:xpdImported
Ordered Locus Names:STK_13070Imported
OrganismiSulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)Imported
Taxonomic identifieri273063 [NCBI]
Taxonomic lineageiArchaeaCrenarchaeotaThermoproteiSulfolobalesSulfolobaceaeSulfolobus
Proteomesi
  • UP000001015 Componenti: Chromosome

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi166 ↔ 171Combined sources
Disulfide bondi244 ↔ 297Combined sources
Disulfide bondi355 ↔ 518Combined sources

Interactioni

Protein-protein interaction databases

STRINGi273063.ST1307.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2VL7X-ray2.25A1-540[»]
ProteinModelPortaliQ971R4.
SMRiQ971R4. Positions 9-540.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ971R4.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1 – 231231Helicase ATP-bindingInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiarCOG00770. Archaea.
COG1199. LUCA.
HOGENOMiHOG000270378.
KOiK10844.
OMAiEPDEINC.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR006555. ATP-dep_Helicase_C.
IPR010614. DEAD_2.
IPR014013. Helic_SF1/SF2_ATP-bd_DinG/Rad3.
IPR006554. Helicase-like_DEXD_c2.
IPR014001. Helicase_ATP-bd.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF06733. DEAD_2. 1 hit.
PF13307. Helicase_C_2. 1 hit.
[Graphical view]
SMARTiSM00487. DEXDc. 1 hit.
SM00488. DEXDc2. 1 hit.
SM00491. HELICc2. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 4 hits.
PROSITEiPS51193. HELICASE_ATP_BIND_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q971R4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEVLKLQLRQ WQAEKLGEAI NALKHGKTLL LNAKPGLGKT VFVEVLGMQL
60 70 80 90 100
KKKVLIFTRT HSQLDSIYKN AKLLGLKTGF LIGKSASCIY AQGDEEPDEI
110 120 130 140 150
NCSKCRLKDK IKTIEDKEPS KLIEEFKDAV DYCPYYSLRA NLKDKDVIAM
160 170 180 190 200
TYPYLFQKPI RNSVFCNKDD CLKLEDYLIV IDEAHNLLEA DKWFTRKISR
210 220 230 240 250
KMLERALKEI EIVERLNRID AKKVKDYINL LIDYMSKLIK DGRCHELSLM
260 270 280 290 300
PLPDRETNGE LIVVTRAYLN IDEGPVKKSS LKSLLKFVEM KGDLYNCNGS
310 320 330 340 350
LVKVPSDVNQ LIEDALNVKT FKVLMSGTLP ESLTLTNSYK IVVNESYGRG
360 370 380 390 400
EYYYCPNVTS ELRKRNSNIP IYSILLKRIY ENSSKSVLVF FPSYEMLESV
410 420 430 440 450
RIHLSGIPVI EENKKTRHEE VLELMKTGKY LVMLVMRAKE SEGVEFREKE
460 470 480 490 500
NLFESLVLAG LPYPNVSDDM VRKRIERLSK LTGKDEDSII HDLTAIVIKQ
510 520 530 540
TIGRAFRDPN DYVKIYLCDS RYREYFADLG ISEKEIKLFA
Length:540
Mass (Da):62,233
Last modified:December 1, 2001 - v1
Checksum:iFC6BA4011E46AF62
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000023 Genomic DNA. Translation: BAB66356.1.
RefSeqiWP_010979334.1. NC_003106.2.

Genome annotation databases

EnsemblBacteriaiBAB66356; BAB66356; STK_13070.
GeneIDi1459315.
KEGGisto:STK_13070.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000023 Genomic DNA. Translation: BAB66356.1.
RefSeqiWP_010979334.1. NC_003106.2.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2VL7X-ray2.25A1-540[»]
ProteinModelPortaliQ971R4.
SMRiQ971R4. Positions 9-540.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi273063.ST1307.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAB66356; BAB66356; STK_13070.
GeneIDi1459315.
KEGGisto:STK_13070.

Phylogenomic databases

eggNOGiarCOG00770. Archaea.
COG1199. LUCA.
HOGENOMiHOG000270378.
KOiK10844.
OMAiEPDEINC.

Enzyme and pathway databases

BioCyciSTOK273063:GJC7-1451-MONOMER.
BRENDAi3.6.4.12. 6166.

Miscellaneous databases

EvolutionaryTraceiQ971R4.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR006555. ATP-dep_Helicase_C.
IPR010614. DEAD_2.
IPR014013. Helic_SF1/SF2_ATP-bd_DinG/Rad3.
IPR006554. Helicase-like_DEXD_c2.
IPR014001. Helicase_ATP-bd.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF06733. DEAD_2. 1 hit.
PF13307. Helicase_C_2. 1 hit.
[Graphical view]
SMARTiSM00487. DEXDc. 1 hit.
SM00488. DEXDc2. 1 hit.
SM00491. HELICc2. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 4 hits.
PROSITEiPS51193. HELICASE_ATP_BIND_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 16993 / JCM 10545 / NBRC 100140 / 7Imported.
  2. Cited for: X-RAY CRYSTALLOGRAPHY (2.25 ANGSTROMS), DISULFIDE BONDS.

Entry informationi

Entry nameiQ971R4_SULTO
AccessioniPrimary (citable) accession number: Q971R4
Entry historyi
Integrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: December 1, 2001
Last modified: May 11, 2016
This is version 89 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.