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Protein

Putative pelota-like protein YCL001W-B

Gene

YCL001W-B

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

  1. nuclear-transcribed mRNA catabolic process, no-go decay Source: InterPro
  2. nuclear-transcribed mRNA catabolic process, non-stop decay Source: InterPro
  3. RNA surveillance Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciYEAST:G3O-29422-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative pelota-like protein YCL001W-B
Gene namesi
Ordered Locus Names:YCL001W-B
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311: Chromosome III

Organism-specific databases

CYGDiYCL001w-b.
SGDiS000007596. YCL001W-B.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 8484Putative pelota-like protein YCL001W-BPRO_0000248412Add
BLAST

Expressioni

Gene expression databases

GenevestigatoriQ96VH2.

Interactioni

Protein-protein interaction databases

BioGridi30979. 1 interaction.
STRINGi4932.YCL001W-B.

Structurei

3D structure databases

ProteinModelPortaliQ96VH2.
SMRiQ96VH2. Positions 1-71.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG1537.
InParanoidiQ96VH2.
OrthoDBiEOG7PVX0C.

Family and domain databases

Gene3Di3.30.1330.30. 1 hit.
InterProiIPR005142. eRF1_3.
IPR029064. L30e-like.
IPR004405. Transl_rel_pelota.
[Graphical view]
PANTHERiPTHR10853. PTHR10853. 1 hit.
PfamiPF03465. eRF1_3. 1 hit.
[Graphical view]
SUPFAMiSSF55315. SSF55315. 1 hit.

Sequencei

Sequence statusi: Complete.

Q96VH2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDDFLEHLSK DDNKAWYGAE ETERAAKLDA IETLLITDSV LKRNDVKKRE
60 70 80
KYLDLIENSG NNNGKIFVLS TSKITVSNLT NQQI
Length:84
Mass (Da):9,572
Last modified:December 1, 2001 - v1
Checksum:iB226796C9A0B6F2B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X59720 Genomic DNA. Translation: CAC42969.1.
BK006937 Genomic DNA. Translation: DAA07480.1.
RefSeqiNP_076878.1. NM_001184462.1.

Genome annotation databases

EnsemblFungiiYCL001W-B; YCL001W-B; YCL001W-B.
GeneIDi850356.
KEGGisce:YCL001W-B.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X59720 Genomic DNA. Translation: CAC42969.1.
BK006937 Genomic DNA. Translation: DAA07480.1.
RefSeqiNP_076878.1. NM_001184462.1.

3D structure databases

ProteinModelPortaliQ96VH2.
SMRiQ96VH2. Positions 1-71.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi30979. 1 interaction.
STRINGi4932.YCL001W-B.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiYCL001W-B; YCL001W-B; YCL001W-B.
GeneIDi850356.
KEGGisce:YCL001W-B.

Organism-specific databases

CYGDiYCL001w-b.
SGDiS000007596. YCL001W-B.

Phylogenomic databases

eggNOGiCOG1537.
InParanoidiQ96VH2.
OrthoDBiEOG7PVX0C.

Enzyme and pathway databases

BioCyciYEAST:G3O-29422-MONOMER.

Miscellaneous databases

NextBioi965827.

Gene expression databases

GenevestigatoriQ96VH2.

Family and domain databases

Gene3Di3.30.1330.30. 1 hit.
InterProiIPR005142. eRF1_3.
IPR029064. L30e-like.
IPR004405. Transl_rel_pelota.
[Graphical view]
PANTHERiPTHR10853. PTHR10853. 1 hit.
PfamiPF03465. eRF1_3. 1 hit.
[Graphical view]
SUPFAMiSSF55315. SSF55315. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The complete DNA sequence of yeast chromosome III."
    Oliver S.G., van der Aart Q.J.M., Agostoni-Carbone M.L., Aigle M., Alberghina L., Alexandraki D., Antoine G., Anwar R., Ballesta J.P.G., Benit P., Berben G., Bergantino E., Biteau N., Bolle P.-A., Bolotin-Fukuhara M., Brown A., Brown A.J.P., Buhler J.-M.
    , Carcano C., Carignani G., Cederberg H., Chanet R., Contreras R., Crouzet M., Daignan-Fornier B., Defoor E., Delgado M.D., Demolder J., Doira C., Dubois E., Dujon B., Duesterhoeft A., Erdmann D., Esteban M., Fabre F., Fairhead C., Faye G., Feldmann H., Fiers W., Francingues-Gaillard M.-C., Franco L., Frontali L., Fukuhara H., Fuller L.J., Galland P., Gent M.E., Gigot D., Gilliquet V., Glansdorff N., Goffeau A., Grenson M., Grisanti P., Grivell L.A., de Haan M., Haasemann M., Hatat D., Hoenicka J., Hegemann J.H., Herbert C.J., Hilger F., Hohmann S., Hollenberg C.P., Huse K., Iborra F., Indge K.J., Isono K., Jacq C., Jacquet M., James C.M., Jauniaux J.-C., Jia Y., Jimenez A., Kelly A., Kleinhans U., Kreisl P., Lanfranchi G., Lewis C., van der Linden C.G., Lucchini G., Lutzenkirchen K., Maat M.J., Mallet L., Mannhaupt G., Martegani E., Mathieu A., Maurer C.T.C., McConnell D., McKee R.A., Messenguy F., Mewes H.-W., Molemans F., Montague M.A., Muzi Falconi M., Navas L., Newlon C.S., Noone D., Pallier C., Panzeri L., Pearson B.M., Perea J., Philippsen P., Pierard A., Planta R.J., Plevani P., Poetsch B., Pohl F.M., Purnelle B., Ramezani Rad M., Rasmussen S.W., Raynal A., Remacha M.A., Richterich P., Roberts A.B., Rodriguez F., Sanz E., Schaaff-Gerstenschlaeger I., Scherens B., Schweitzer B., Shu Y., Skala J., Slonimski P.P., Sor F., Soustelle C., Spiegelberg R., Stateva L.I., Steensma H.Y., Steiner S., Thierry A., Thireos G., Tzermia M., Urrestarazu L.A., Valle G., Vetter I., van Vliet-Reedijk J.C., Voet M., Volckaert G., Vreken P., Wang H., Warmington J.R., von Wettstein D., Wicksteed B.L., Wilson C., Wurst H., Xu G., Yoshikawa A., Zimmermann F.K., Sgouros J.G.
    Nature 357:38-46(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  2. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  3. Cited for: GENOME REANNOTATION.

Entry informationi

Entry nameiYC01B_YEAST
AccessioniPrimary (citable) accession number: Q96VH2
Secondary accession number(s): D6VR11
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 5, 2006
Last sequence update: December 1, 2001
Last modified: January 7, 2015
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  3. Yeast chromosome III
    Yeast (Saccharomyces cerevisiae) chromosome III: entries and gene names

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.