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Q96VH2

- YC01B_YEAST

UniProt

Q96VH2 - YC01B_YEAST

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Protein

Putative pelota-like protein YCL001W-B

Gene
YCL001W-B
Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 1 out of 5 - Protein inferred from homologyi

Functioni

GO - Biological processi

  1. nuclear-transcribed mRNA catabolic process, no-go decay Source: InterPro
  2. nuclear-transcribed mRNA catabolic process, non-stop decay Source: InterPro
  3. RNA surveillance Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciYEAST:G3O-29422-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative pelota-like protein YCL001W-B
Gene namesi
Ordered Locus Names:YCL001W-B
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311: Chromosome III

Organism-specific databases

CYGDiYCL001w-b.
SGDiS000007596. YCL001W-B.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 8484Putative pelota-like protein YCL001W-BPRO_0000248412Add
BLAST

Expressioni

Gene expression databases

GenevestigatoriQ96VH2.

Interactioni

Protein-protein interaction databases

BioGridi30979. 1 interaction.
STRINGi4932.YCL001W-B.

Structurei

3D structure databases

ProteinModelPortaliQ96VH2.
SMRiQ96VH2. Positions 1-71.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG1537.
OMAiYEEIRCH.
OrthoDBiEOG7PVX0C.

Family and domain databases

Gene3Di3.30.1330.30. 1 hit.
InterProiIPR005142. eRF1_3.
IPR029064. L30e-like.
IPR004405. Transl_rel_pelota.
[Graphical view]
PANTHERiPTHR10853. PTHR10853. 1 hit.
PfamiPF03465. eRF1_3. 1 hit.
[Graphical view]
SUPFAMiSSF55315. SSF55315. 1 hit.

Sequencei

Sequence statusi: Complete.

Q96VH2-1 [UniParc]FASTAAdd to Basket

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MDDFLEHLSK DDNKAWYGAE ETERAAKLDA IETLLITDSV LKRNDVKKRE   50
KYLDLIENSG NNNGKIFVLS TSKITVSNLT NQQI 84
Length:84
Mass (Da):9,572
Last modified:December 1, 2001 - v1
Checksum:iB226796C9A0B6F2B
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X59720 Genomic DNA. Translation: CAC42969.1.
BK006937 Genomic DNA. Translation: DAA07480.1.
RefSeqiNP_076878.1. NM_001184462.1.

Genome annotation databases

EnsemblFungiiYCL001W-B; YCL001W-B; YCL001W-B.
GeneIDi850356.
KEGGisce:YCL001W-B.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X59720 Genomic DNA. Translation: CAC42969.1 .
BK006937 Genomic DNA. Translation: DAA07480.1 .
RefSeqi NP_076878.1. NM_001184462.1.

3D structure databases

ProteinModelPortali Q96VH2.
SMRi Q96VH2. Positions 1-71.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 30979. 1 interaction.
STRINGi 4932.YCL001W-B.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblFungii YCL001W-B ; YCL001W-B ; YCL001W-B .
GeneIDi 850356.
KEGGi sce:YCL001W-B.

Organism-specific databases

CYGDi YCL001w-b.
SGDi S000007596. YCL001W-B.

Phylogenomic databases

eggNOGi COG1537.
OMAi YEEIRCH.
OrthoDBi EOG7PVX0C.

Enzyme and pathway databases

BioCyci YEAST:G3O-29422-MONOMER.

Miscellaneous databases

NextBioi 965827.

Gene expression databases

Genevestigatori Q96VH2.

Family and domain databases

Gene3Di 3.30.1330.30. 1 hit.
InterProi IPR005142. eRF1_3.
IPR029064. L30e-like.
IPR004405. Transl_rel_pelota.
[Graphical view ]
PANTHERi PTHR10853. PTHR10853. 1 hit.
Pfami PF03465. eRF1_3. 1 hit.
[Graphical view ]
SUPFAMi SSF55315. SSF55315. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The complete DNA sequence of yeast chromosome III."
    Oliver S.G., van der Aart Q.J.M., Agostoni-Carbone M.L., Aigle M., Alberghina L., Alexandraki D., Antoine G., Anwar R., Ballesta J.P.G., Benit P., Berben G., Bergantino E., Biteau N., Bolle P.-A., Bolotin-Fukuhara M., Brown A., Brown A.J.P., Buhler J.-M.
    , Carcano C., Carignani G., Cederberg H., Chanet R., Contreras R., Crouzet M., Daignan-Fornier B., Defoor E., Delgado M.D., Demolder J., Doira C., Dubois E., Dujon B., Duesterhoeft A., Erdmann D., Esteban M., Fabre F., Fairhead C., Faye G., Feldmann H., Fiers W., Francingues-Gaillard M.-C., Franco L., Frontali L., Fukuhara H., Fuller L.J., Galland P., Gent M.E., Gigot D., Gilliquet V., Glansdorff N., Goffeau A., Grenson M., Grisanti P., Grivell L.A., de Haan M., Haasemann M., Hatat D., Hoenicka J., Hegemann J.H., Herbert C.J., Hilger F., Hohmann S., Hollenberg C.P., Huse K., Iborra F., Indge K.J., Isono K., Jacq C., Jacquet M., James C.M., Jauniaux J.-C., Jia Y., Jimenez A., Kelly A., Kleinhans U., Kreisl P., Lanfranchi G., Lewis C., van der Linden C.G., Lucchini G., Lutzenkirchen K., Maat M.J., Mallet L., Mannhaupt G., Martegani E., Mathieu A., Maurer C.T.C., McConnell D., McKee R.A., Messenguy F., Mewes H.-W., Molemans F., Montague M.A., Muzi Falconi M., Navas L., Newlon C.S., Noone D., Pallier C., Panzeri L., Pearson B.M., Perea J., Philippsen P., Pierard A., Planta R.J., Plevani P., Poetsch B., Pohl F.M., Purnelle B., Ramezani Rad M., Rasmussen S.W., Raynal A., Remacha M.A., Richterich P., Roberts A.B., Rodriguez F., Sanz E., Schaaff-Gerstenschlaeger I., Scherens B., Schweitzer B., Shu Y., Skala J., Slonimski P.P., Sor F., Soustelle C., Spiegelberg R., Stateva L.I., Steensma H.Y., Steiner S., Thierry A., Thireos G., Tzermia M., Urrestarazu L.A., Valle G., Vetter I., van Vliet-Reedijk J.C., Voet M., Volckaert G., Vreken P., Wang H., Warmington J.R., von Wettstein D., Wicksteed B.L., Wilson C., Wurst H., Xu G., Yoshikawa A., Zimmermann F.K., Sgouros J.G.
    Nature 357:38-46(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  2. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  3. Cited for: GENOME REANNOTATION.

Entry informationi

Entry nameiYC01B_YEAST
AccessioniPrimary (citable) accession number: Q96VH2
Secondary accession number(s): D6VR11
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 5, 2006
Last sequence update: December 1, 2001
Last modified: September 3, 2014
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  3. Yeast chromosome III
    Yeast (Saccharomyces cerevisiae) chromosome III: entries and gene names

External Data

Dasty 3

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