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Q96VH2

- YC01B_YEAST

UniProt

Q96VH2 - YC01B_YEAST

Protein

Putative pelota-like protein YCL001W-B

Gene

YCL001W-B

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 1 out of 5- Protein inferred from homologyi
  1. Functioni

    GO - Biological processi

    1. nuclear-transcribed mRNA catabolic process, no-go decay Source: InterPro
    2. nuclear-transcribed mRNA catabolic process, non-stop decay Source: InterPro
    3. RNA surveillance Source: InterPro

    Enzyme and pathway databases

    BioCyciYEAST:G3O-29422-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Putative pelota-like protein YCL001W-B
    Gene namesi
    Ordered Locus Names:YCL001W-B
    OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
    Taxonomic identifieri559292 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
    ProteomesiUP000002311: Chromosome III

    Organism-specific databases

    CYGDiYCL001w-b.
    SGDiS000007596. YCL001W-B.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 8484Putative pelota-like protein YCL001W-BPRO_0000248412Add
    BLAST

    Expressioni

    Gene expression databases

    GenevestigatoriQ96VH2.

    Interactioni

    Protein-protein interaction databases

    BioGridi30979. 1 interaction.
    STRINGi4932.YCL001W-B.

    Structurei

    3D structure databases

    ProteinModelPortaliQ96VH2.
    SMRiQ96VH2. Positions 1-71.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Phylogenomic databases

    eggNOGiCOG1537.
    OMAiYEEIRCH.
    OrthoDBiEOG7PVX0C.

    Family and domain databases

    Gene3Di3.30.1330.30. 1 hit.
    InterProiIPR005142. eRF1_3.
    IPR029064. L30e-like.
    IPR004405. Transl_rel_pelota.
    [Graphical view]
    PANTHERiPTHR10853. PTHR10853. 1 hit.
    PfamiPF03465. eRF1_3. 1 hit.
    [Graphical view]
    SUPFAMiSSF55315. SSF55315. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q96VH2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MDDFLEHLSK DDNKAWYGAE ETERAAKLDA IETLLITDSV LKRNDVKKRE   50
    KYLDLIENSG NNNGKIFVLS TSKITVSNLT NQQI 84
    Length:84
    Mass (Da):9,572
    Last modified:December 1, 2001 - v1
    Checksum:iB226796C9A0B6F2B
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X59720 Genomic DNA. Translation: CAC42969.1.
    BK006937 Genomic DNA. Translation: DAA07480.1.
    RefSeqiNP_076878.1. NM_001184462.1.

    Genome annotation databases

    EnsemblFungiiYCL001W-B; YCL001W-B; YCL001W-B.
    GeneIDi850356.
    KEGGisce:YCL001W-B.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X59720 Genomic DNA. Translation: CAC42969.1 .
    BK006937 Genomic DNA. Translation: DAA07480.1 .
    RefSeqi NP_076878.1. NM_001184462.1.

    3D structure databases

    ProteinModelPortali Q96VH2.
    SMRi Q96VH2. Positions 1-71.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 30979. 1 interaction.
    STRINGi 4932.YCL001W-B.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblFungii YCL001W-B ; YCL001W-B ; YCL001W-B .
    GeneIDi 850356.
    KEGGi sce:YCL001W-B.

    Organism-specific databases

    CYGDi YCL001w-b.
    SGDi S000007596. YCL001W-B.

    Phylogenomic databases

    eggNOGi COG1537.
    OMAi YEEIRCH.
    OrthoDBi EOG7PVX0C.

    Enzyme and pathway databases

    BioCyci YEAST:G3O-29422-MONOMER.

    Miscellaneous databases

    NextBioi 965827.

    Gene expression databases

    Genevestigatori Q96VH2.

    Family and domain databases

    Gene3Di 3.30.1330.30. 1 hit.
    InterProi IPR005142. eRF1_3.
    IPR029064. L30e-like.
    IPR004405. Transl_rel_pelota.
    [Graphical view ]
    PANTHERi PTHR10853. PTHR10853. 1 hit.
    Pfami PF03465. eRF1_3. 1 hit.
    [Graphical view ]
    SUPFAMi SSF55315. SSF55315. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "The complete DNA sequence of yeast chromosome III."
      Oliver S.G., van der Aart Q.J.M., Agostoni-Carbone M.L., Aigle M., Alberghina L., Alexandraki D., Antoine G., Anwar R., Ballesta J.P.G., Benit P., Berben G., Bergantino E., Biteau N., Bolle P.-A., Bolotin-Fukuhara M., Brown A., Brown A.J.P., Buhler J.-M.
      , Carcano C., Carignani G., Cederberg H., Chanet R., Contreras R., Crouzet M., Daignan-Fornier B., Defoor E., Delgado M.D., Demolder J., Doira C., Dubois E., Dujon B., Duesterhoeft A., Erdmann D., Esteban M., Fabre F., Fairhead C., Faye G., Feldmann H., Fiers W., Francingues-Gaillard M.-C., Franco L., Frontali L., Fukuhara H., Fuller L.J., Galland P., Gent M.E., Gigot D., Gilliquet V., Glansdorff N., Goffeau A., Grenson M., Grisanti P., Grivell L.A., de Haan M., Haasemann M., Hatat D., Hoenicka J., Hegemann J.H., Herbert C.J., Hilger F., Hohmann S., Hollenberg C.P., Huse K., Iborra F., Indge K.J., Isono K., Jacq C., Jacquet M., James C.M., Jauniaux J.-C., Jia Y., Jimenez A., Kelly A., Kleinhans U., Kreisl P., Lanfranchi G., Lewis C., van der Linden C.G., Lucchini G., Lutzenkirchen K., Maat M.J., Mallet L., Mannhaupt G., Martegani E., Mathieu A., Maurer C.T.C., McConnell D., McKee R.A., Messenguy F., Mewes H.-W., Molemans F., Montague M.A., Muzi Falconi M., Navas L., Newlon C.S., Noone D., Pallier C., Panzeri L., Pearson B.M., Perea J., Philippsen P., Pierard A., Planta R.J., Plevani P., Poetsch B., Pohl F.M., Purnelle B., Ramezani Rad M., Rasmussen S.W., Raynal A., Remacha M.A., Richterich P., Roberts A.B., Rodriguez F., Sanz E., Schaaff-Gerstenschlaeger I., Scherens B., Schweitzer B., Shu Y., Skala J., Slonimski P.P., Sor F., Soustelle C., Spiegelberg R., Stateva L.I., Steensma H.Y., Steiner S., Thierry A., Thireos G., Tzermia M., Urrestarazu L.A., Valle G., Vetter I., van Vliet-Reedijk J.C., Voet M., Volckaert G., Vreken P., Wang H., Warmington J.R., von Wettstein D., Wicksteed B.L., Wilson C., Wurst H., Xu G., Yoshikawa A., Zimmermann F.K., Sgouros J.G.
      Nature 357:38-46(1992) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 204508 / S288c.
    2. Cited for: GENOME REANNOTATION.
      Strain: ATCC 204508 / S288c.
    3. Cited for: GENOME REANNOTATION.

    Entry informationi

    Entry nameiYC01B_YEAST
    AccessioniPrimary (citable) accession number: Q96VH2
    Secondary accession number(s): D6VR11
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: September 5, 2006
    Last sequence update: December 1, 2001
    Last modified: October 1, 2014
    This is version 69 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programFungal Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families
    2. Yeast
      Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
    3. Yeast chromosome III
      Yeast (Saccharomyces cerevisiae) chromosome III: entries and gene names

    External Data

    Dasty 3