Q96PK6 (RBM14_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 111.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: RNA-binding protein 14 Alternative name(s): Paraspeckle protein 2 Short name=PSP2 RNA-binding motif protein 14 RRM-containing coactivator activator/modulator Synaptotagmin-interacting protein Short name=SYT-interacting protein | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 669 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Isoform 1 may function as a nuclear receptor coactivator, enhancing transcription through other coactivators such as NCOA6 and CITED1. Isoform 2, functions as a transcriptional repressor, modulating transcriptional activities of coactivators including isoform 1, NCOA6 and CITED1. |
| Subunit structure | Isoform 1 interacts with NCOA6, CITED1 and XRCC5/KU86. Isoform 1 interacts with SS18 isoform 1. Isoform 1 interacts with SS18 isoform 2. Ref.1 Ref.11 |
| Subcellular location | Nucleus. Nucleus › nucleolus. Note: In punctate subnuclear structures often located adjacent to splicing speckles, called paraspeckles. Ref.9 Ref.23 |
| Tissue specificity | Expressed in all tissues tested, including brain, heart, skeletal muscle, colon, thymus, spleen, kidney, liver, small intestine, placenta, lung and peripheral blood lymphocytes. |
| Sequence similarities | Contains 2 RRM (RNA recognition motif) domains. |
Ontologies
Alternative products
| This entry describes 3 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q96PK6-1) Also known as: CoAA; This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q96PK6-2) Also known as: CoAM; The sequence of this isoform differs from the canonical sequence as follows: 151-156: QKKGPG → MVPTGV 157-669: Missing. | ||||||
| Isoform 3 (identifier: Q96PK6-3) The sequence of this isoform differs from the canonical sequence as follows: 113-118: DYAFVH → GGMCVG 119-669: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||||||||||||
Molecule processing | |||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 669 | 669 | RNA-binding protein 14 | PRO_0000081774 | |||||||||||||||||
Regions | |||||||||||||||||||||
| Domain | 1 – 73 | 73 | RRM 1 | ||||||||||||||||||
| Domain | 79 – 149 | 71 | RRM 2 | ||||||||||||||||||
| Region | 307 – 354 | 48 | TRBP-interacting domain | ||||||||||||||||||
| Compositional bias | 224 – 569 | 346 | Ala-rich | ||||||||||||||||||
Amino acid modifications | |||||||||||||||||||||
| Modified residue | 161 | 1 | Phosphoserine Ref.20 | ||||||||||||||||||
| Modified residue | 206 | 1 | Phosphothreonine Ref.10 Ref.12 Ref.16 Ref.18 Ref.20 Ref.22 | ||||||||||||||||||
| Modified residue | 220 | 1 | Phosphoserine Ref.22 | ||||||||||||||||||
| Modified residue | 256 | 1 | Phosphoserine Ref.17 | ||||||||||||||||||
| Modified residue | 520 | 1 | Phosphoserine By similarity | ||||||||||||||||||
| Modified residue | 562 | 1 | Phosphoserine Ref.13 | ||||||||||||||||||
| Modified residue | 572 | 1 | Phosphothreonine Ref.19 | ||||||||||||||||||
| Modified residue | 582 | 1 | Phosphoserine By similarity | ||||||||||||||||||
| Modified residue | 618 | 1 | Phosphoserine Ref.17 Ref.20 | ||||||||||||||||||
| Modified residue | 629 | 1 | Phosphothreonine By similarity | ||||||||||||||||||
| Modified residue | 632 | 1 | Phosphoserine By similarity | ||||||||||||||||||
Natural variations | |||||||||||||||||||||
| Alternative sequence | 113 – 118 | 6 | DYAFVH → GGMCVG in isoform 3. | VSP_044641 | |||||||||||||||||
| Alternative sequence | 119 – 669 | 551 | Missing in isoform 3. | VSP_044642 | |||||||||||||||||
| Alternative sequence | 151 – 156 | 6 | QKKGPG → MVPTGV in isoform 2. | VSP_015078 | |||||||||||||||||
| Alternative sequence | 157 – 669 | 513 | Missing in isoform 2. | VSP_015079 | |||||||||||||||||
Experimental info | |||||||||||||||||||||
| Sequence conflict | 560 | 1 | S → T in AAK77961. Ref.1 | ||||||||||||||||||
| Sequence conflict | 609 | 1 | A → V in BAD96550. Ref.4 | ||||||||||||||||||
Secondary structure | |||||||||||||||||||||
Helix Strand Turn | |||||||||||||||||||||
| Beta strand | 81 – 85 | 5 | |||||||||||||||||||
| Helix | 92 – 102 | 11 | |||||||||||||||||||
| Beta strand | 105 – 110 | 6 | |||||||||||||||||||
| Beta strand | 115 – 120 | 6 | |||||||||||||||||||
| Helix | 122 – 132 | 11 | |||||||||||||||||||
| Beta strand | 143 – 147 | 5 | |||||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Identification and characterization of RRM-containing coactivator activator (CoAA) as TRBP-interacting protein, and its splice variant as a coactivator modulator (CoAM)." Iwasaki T., Chin W.W., Ko L. J. Biol. Chem. 276:33375-33383(2001) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 2), ALTERNATIVE SPLICING, INTERACTION WITH CITED1; NCOA6 AND XRCC5. |
| [2] | "SIP, a novel protein interacting with SYT." Antonson P., Goodwin G. Submitted (JUL-1998) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). Tissue: Synovial sarcoma. |
| [3] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Embryo. |
| [4] | Suzuki Y., Sugano S., Totoki Y., Toyoda A., Takeda T., Sakaki Y., Tanaka A., Yokoyama S. Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Liver. |
| [5] | "Human chromosome 11 DNA sequence and analysis including novel gene identification." Taylor T.D., Noguchi H., Totoki Y., Toyoda A., Kuroki Y., Dewar K., Lloyd C., Itoh T., Takeda T., Kim D.-W., She X., Barlow K.F., Bloom T., Bruford E., Chang J.L., Cuomo C.A., Eichler E., FitzGerald M.G. Sakaki Y.Nature 440:497-500(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [6] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [7] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 3). Tissue: Leiomyosarcoma and Lung. |
| [8] | "The full-ORF clone resource of the German cDNA consortium." Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I. BMC Genomics 8:399-399(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 601-669. Tissue: Liver. |
| [9] | "Paraspeckles: a novel nuclear domain." Fox A.H., Lam Y.W., Leung A.K.L., Lyon C.E., Andersen J., Mann M., Lamond A.I. Curr. Biol. 12:13-25(2002) [PubMed] [Europe PMC] [Abstract] Cited for: SUBCELLULAR LOCATION. |
| [10] | "Robust phosphoproteomic profiling of tyrosine phosphorylation sites from human T cells using immobilized metal affinity chromatography and tandem mass spectrometry." Brill L.M., Salomon A.R., Ficarro S.B., Mukherji M., Stettler-Gill M., Peters E.C. Anal. Chem. 76:2763-2772(2004) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-206, MASS SPECTROMETRY. Tissue: Leukemic T-cell. |
| [11] | "Synovial sarcoma translocation (SYT) encodes a nuclear receptor coactivator." Iwasaki T., Koibuchi N., Chin W.W. Endocrinology 146:3892-3899(2005) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH SS18. |
| [12] | "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks." Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M. Cell 127:635-648(2006) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-206, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [13] | "ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage." Matsuoka S., Ballif B.A., Smogorzewska A., McDonald E.R. III, Hurov K.E., Luo J., Bakalarski C.E., Zhao Z., Solimini N., Lerenthal Y., Shiloh Y., Gygi S.P., Elledge S.J. Science 316:1160-1166(2007) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-562, MASS SPECTROMETRY. Tissue: Embryonic kidney. |
| [14] | "Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis." Cantin G.T., Yi W., Lu B., Park S.K., Xu T., Lee J.-D., Yates J.R. III J. Proteome Res. 7:1346-1351(2008) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: Cervix carcinoma. |
| [15] | "Phosphorylation analysis of primary human T lymphocytes using sequential IMAC and titanium oxide enrichment." Carrascal M., Ovelleiro D., Casas V., Gay M., Abian J. J. Proteome Res. 7:5167-5176(2008) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: T-cell. |
| [16] | "Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle." Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M. Mol. Cell 31:438-448(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-206, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [17] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-256 AND SER-618, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [18] | "Large-scale proteomics analysis of the human kinome." Oppermann F.S., Gnad F., Olsen J.V., Hornberger R., Greff Z., Keri G., Mann M., Daub H. Mol. Cell. Proteomics 8:1751-1764(2009) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-206, MASS SPECTROMETRY. |
| [19] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-572, MASS SPECTROMETRY. Tissue: Leukemic T-cell. |
| [20] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-161; THR-206 AND SER-618, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [21] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [22] | "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation." Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B. Sci. Signal. 4:RS3-RS3(2011) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-206 AND SER-220, MASS SPECTROMETRY. |
| [23] | "Systematic analysis of protein pools, isoforms, and modifications affecting turnover and subcellular localization." Ahmad Y., Boisvert F.M., Lundberg E., Uhlen M., Lamond A.I. Mol. Cell. Proteomics 11:M111.013680.01-M111.013680.15(2012) [PubMed] [Europe PMC] [Abstract] Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS]. |
| [24] | "Solution structure of RNA binding domain 2 in RNA-binding protein 14." RIKEN structural genomics initiative (RSGI) Submitted (OCT-2006) to the PDB data bank Cited for: STRUCTURE BY NMR OF 77-153. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | AF315632 mRNA. Translation: AAK77961.1. AF315633 mRNA. Translation: AAK77962.1. AF080561 mRNA. Translation: AAC64058.1. AK021768 mRNA. Translation: BAG51046.1. AK222830 mRNA. Translation: BAD96550.1. AP001157 Genomic DNA. No translation available. CH471076 Genomic DNA. Translation: EAW74552.1. BC000488 mRNA. Translation: AAH00488.1. BE885635 mRNA. No translation available. CR749306 mRNA. Translation: CAH18161.1. | ||||||||||||
| IPI | IPI00013174. IPI00644837. IPI01009009. | ||||||||||||
| RefSeq | NP_001185765.1. NM_001198836.1. NP_001185775.1. NM_001198846.1. NP_006319.1. NM_006328.3. | ||||||||||||
| UniGene | Hs.533712. | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
| ||||||||||||
| ProteinModelPortal | Q96PK6. | ||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| IntAct | Q96PK6. 8 interactions. | ||||||||||||
| MINT | MINT-2798129. | ||||||||||||
| STRING | 9606.ENSP00000311747. | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | Q96PK6. | ||||||||||||
Polymorphism databases | |||||||||||||
| DMDM | 73913750. | ||||||||||||
Proteomic databases | |||||||||||||
| PaxDb | Q96PK6. | ||||||||||||
| PRIDE | Q96PK6. | ||||||||||||
Protocols and materials databases | |||||||||||||
| DNASU | 10432. | ||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | ENST00000310137; ENSP00000311747; ENSG00000239306. ENST00000393979; ENSP00000377548; ENSG00000239306. | ||||||||||||
| GeneID | 100526737. 10432. | ||||||||||||
| KEGG | hsa:100526737. hsa:10432. | ||||||||||||
| UCSC | uc001oit.3. human. uc009yri.3. human. | ||||||||||||
Organism-specific databases | |||||||||||||
| CTD | 100526737. 10432. | ||||||||||||
| GeneCards | GC11P066384. | ||||||||||||
| HGNC | HGNC:14219. RBM14. | ||||||||||||
| HPA | HPA006628. | ||||||||||||
| MIM | 612409. gene. | ||||||||||||
| neXtProt | NX_Q96PK6. | ||||||||||||
| PharmGKB | PA34263. | ||||||||||||
| GenAtlas | Search... | ||||||||||||
Phylogenomic databases | |||||||||||||
| eggNOG | COG0724. | ||||||||||||
| HOGENOM | HOG000065673. | ||||||||||||
| HOVERGEN | HBG053180. | ||||||||||||
| InParanoid | Q96PK6. | ||||||||||||
| KO | K13189. | ||||||||||||
| OMA | SLTSYGA. | ||||||||||||
| OrthoDB | EOG45X7XS. | ||||||||||||
| PhylomeDB | Q96PK6. | ||||||||||||
Gene expression databases | |||||||||||||
| ArrayExpress | Q96PK6. | ||||||||||||
| Bgee | Q96PK6. | ||||||||||||
| Genevestigator | Q96PK6. | ||||||||||||
| GermOnline | ENSG00000173959. Homo sapiens. | ||||||||||||
Family and domain databases | |||||||||||||
| Gene3D | 3.30.70.330. 2 hits. | ||||||||||||
| InterPro | IPR012677. Nucleotide-bd_a/b_plait. IPR000504. RRM_dom. [Graphical view] | ||||||||||||
| Pfam | PF00076. RRM_1. 2 hits. [Graphical view] | ||||||||||||
| SMART | SM00360. RRM. 2 hits. [Graphical view] | ||||||||||||
| PROSITE | PS50102. RRM. 2 hits. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other | |||||||||||||
| ChiTaRS | RBM14. human. RBM14-RBM4. human. | ||||||||||||
| EvolutionaryTrace | Q96PK6. | ||||||||||||
| GenomeRNAi | 10432. | ||||||||||||
| NextBio | 34054915. | ||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | RBM14_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q96PK6 Secondary accession number(s): B3KMN4 Q96PK5 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 11 Human chromosome 11: entries, gene names and cross-references to MIM |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
