Q96P48 (ARAP1_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 123.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 Alternative name(s): Centaurin-delta-2 Short name=Cnt-d2 | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 1450 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Phosphatidylinositol 3,4,5-trisphosphate-dependent GTPase-activating protein that modulates actin cytoskeleton remodeling by regulating ARF and RHO family members. Is activated by phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) binding. Can be activated by phosphatidylinositol 3,4-bisphosphate (PtdIns(3,4,5)P2) binding, albeit with lower efficiency. Has a preference for ARF1 and ARF5 By similarity. Ref.1 |
| Subunit structure | Interacts with TNFRSF10A. Ref.11 |
| Subcellular location | Cytoplasm. Golgi apparatus › Golgi stack membrane; Peripheral membrane protein. Cell membrane. Note: Associated with Golgi stacks in resting cells. Throughout the cytoplasm and in surface protrusion in cells that are in the process of attaching to a surface and spreading. Ref.1 Ref.11 |
| Tissue specificity | Detected in heart, skeletal muscle, spleen, kidney, liver, placenta, lung, peripheral blood leukocytes, adrenal gland, bone marrow, brain, lymph node, mammary gland, prostate, spinal cord, stomach, thyroid and trachea. Ref.1 |
| Sequence similarities | Contains 1 Arf-GAP domain. Contains 4 PH domains. Contains 1 Ras-associating domain. Contains 1 Rho-GAP domain. Contains 1 SAM (sterile alpha motif) domain. |
| Sequence caution | The sequence BAA34502.2 differs from that shown. Reason: Erroneous initiation. The sequence BAD92710.1 differs from that shown. Reason: Erroneous initiation. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| TNFRSF10A | O00220 | 4 | EBI-710003,EBI-518861 | |
| XRCC6 | P12956 | 2 | EBI-710003,EBI-353208 |
Alternative products
| This entry describes 7 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 6 (identifier: Q96P48-6) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 1 (identifier: Q96P48-1) The sequence of this isoform differs from the canonical sequence as follows: 1-240: Missing. 241-249: APARVMTKK → MTLSGSRGQ | ||||||
| Isoform 2 (identifier: Q96P48-2) The sequence of this isoform differs from the canonical sequence as follows: 1-240: Missing. 241-249: APARVMTKK → MTLSGSRGQ 1320-1330: Missing. | ||||||
| Isoform 3 (identifier: Q96P48-3) The sequence of this isoform differs from the canonical sequence as follows: 1320-1330: Missing. | ||||||
| Isoform 4 (identifier: Q96P48-4) The sequence of this isoform differs from the canonical sequence as follows: 1-245: Missing. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 5 (identifier: Q96P48-5) The sequence of this isoform differs from the canonical sequence as follows: 1-760: Missing. 761-767: QDRRARE → MDASGKG 1320-1330: Missing. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 7 (identifier: Q96P48-7) The sequence of this isoform differs from the canonical sequence as follows: 1-245: Missing. 604-664: Missing. 1320-1330: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1450 | 1450 | Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 | PRO_0000074214 | |||||
Regions | |||||||||
| Domain | 6 – 70 | 65 | SAM | ||||||
| Domain | 327 – 419 | 93 | PH 1 | ||||||
| Domain | 440 – 529 | 90 | PH 2 | ||||||
| Domain | 535 – 660 | 126 | Arf-GAP | ||||||
| Domain | 743 – 850 | 108 | PH 3 | ||||||
| Domain | 954 – 1139 | 186 | Rho-GAP | ||||||
| Domain | 1172 – 1261 | 90 | Ras-associating | ||||||
| Domain | 1274 – 1396 | 123 | PH 4 | ||||||
| Zinc finger | 550 – 576 | 27 | C4-type | ||||||
Amino acid modifications | |||||||||
| Modified residue | 229 | 1 | Phosphoserine Ref.13 | ||||||
| Modified residue | 354 | 1 | Phosphothreonine Ref.10 | ||||||
| Modified residue | 428 | 1 | Phosphoserine Ref.15 | ||||||
| Modified residue | 431 | 1 | Phosphotyrosine Ref.13 | ||||||
| Modified residue | 738 | 1 | Phosphoserine Ref.14 | ||||||
| Modified residue | 1435 | 1 | Phosphoserine Ref.13 Ref.14 | ||||||
Natural variations | |||||||||
| Alternative sequence | 1 – 760 | 760 | Missing in isoform 5. | VSP_014998 | |||||
| Alternative sequence | 1 – 245 | 245 | Missing in isoform 4 and isoform 7. | VSP_015000 | |||||
| Alternative sequence | 1 – 240 | 240 | Missing in isoform 1 and isoform 2. | VSP_036607 | |||||
| Alternative sequence | 241 – 249 | 9 | APARVMTKK → MTLSGSRGQ in isoform 1 and isoform 2. | VSP_036608 | |||||
| Alternative sequence | 604 – 664 | 61 | Missing in isoform 7. | VSP_043530 | |||||
| Alternative sequence | 761 – 767 | 7 | QDRRARE → MDASGKG in isoform 5. | VSP_015001 | |||||
| Alternative sequence | 1320 – 1330 | 11 | Missing in isoform 2, isoform 3, isoform 5 and isoform 7. | VSP_000311 | |||||
| Natural variant | 358 | 1 | R → Q. Corresponds to variant rs34976830 [ dbSNP | Ensembl ]. | VAR_055529 | |||||
| Natural variant | 1047 | 1 | Q → E. Ref.6 Corresponds to variant rs56200889 [ dbSNP | Ensembl ]. | VAR_061023 | |||||
Experimental info | |||||||||
| Sequence conflict | 1408 | 1 | V → M in AAH56401. Ref.8 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "ARAP1: a point of convergence for Arf and Rho signaling." Miura K., Jacques K.M., Stauffer S., Kubosaki A., Zhu K., Hirsch D.S., Resau J., Zheng Y., Randazzo P.A. Mol. Cell 9:109-119(2002) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION, SUBCELLULAR LOCATION, TISSUE SPECIFICITY. |
| [2] | "ARAP1 splice variants in man and mouse." Krugmann S., Coadwell J., Stephens L.R., Hawkins P.T. Submitted (JAN-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 6). |
| [3] | "Prediction of the coding sequences of unidentified human genes. XI. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro." Nagase T., Ishikawa K., Suyama M., Kikuno R., Miyajima N., Tanaka A., Kotani H., Nomura N., Ohara O. DNA Res. 5:277-286(1998) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 4). Tissue: Brain. |
| [4] | "Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones." Nakajima D., Okazaki N., Yamakawa H., Kikuno R., Ohara O., Nagase T. DNA Res. 9:99-106(2002) [PubMed] [Europe PMC] [Abstract] Cited for: SEQUENCE REVISION. |
| [5] | "Human ARAP1b." Randazzo P.A., Yoon H.-Y., Miura K. Submitted (FEB-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). |
| [6] | Totoki Y., Toyoda A., Takeda T., Sakaki Y., Tanaka A., Yokoyama S., Ohara O., Nagase T., Kikuno R.F. Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3), VARIANT GLU-1047. Tissue: Brain. |
| [7] | "Human chromosome 11 DNA sequence and analysis including novel gene identification." Taylor T.D., Noguchi H., Totoki Y., Toyoda A., Kuroki Y., Dewar K., Lloyd C., Itoh T., Takeda T., Kim D.-W., She X., Barlow K.F., Bloom T., Bruford E., Chang J.L., Cuomo C.A., Eichler E., FitzGerald M.G. Sakaki Y.Nature 440:497-500(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [8] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 5 AND 7), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 792-1450 (ISOFORMS 2/3/5). Tissue: Brain and Pancreas. |
| [9] | "KIAA0782 as a member (centaurin delta2) of the ArfGAP centaurin family." Hong W. Submitted (AUG-2001) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 315-1450 (ISOFORM 1). |
| [10] | "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks." Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M. Cell 127:635-648(2006) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-354, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [11] | "Arf and Rho GAP adapter protein ARAP1 participates in the mobilization of TRAIL-R1/DR4 to the plasma membrane." Simova S., Klima M., Cermak L., Sourkova V., Andera L. Apoptosis 13:423-436(2008) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH TNFRSF10A, SUBCELLULAR LOCATION. |
| [12] | "Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis." Cantin G.T., Yi W., Lu B., Park S.K., Xu T., Lee J.-D., Yates J.R. III J. Proteome Res. 7:1346-1351(2008) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: Cervix carcinoma. |
| [13] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-229; TYR-431 AND SER-1435, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [14] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-738 AND SER-1435, MASS SPECTROMETRY. Tissue: Leukemic T-cell. |
| [15] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-428, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [16] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AY049732 mRNA. Translation: AAL12169.1. AJ621557 mRNA. Translation: CAF21317.1. AB018325 mRNA. Translation: BAA34502.2. Different initiation. AY553630 mRNA. Translation: AAT36325.1. AB209473 mRNA. Translation: BAD92710.1. Different initiation. AP002381 Genomic DNA. No translation available. AP003065 Genomic DNA. No translation available. BC008315 mRNA. Translation: AAH08315.1. BC021244 mRNA. No translation available. BC056401 mRNA. Translation: AAH56401.1. BC140792 mRNA. Translation: AAI40793.1. AF411983 mRNA. Translation: AAL04167.1. |
| IPI | IPI00220421. IPI00479190. IPI00639996. IPI00640351. IPI00646915. IPI00828080. |
| PIR | C59431. |
| RefSeq | NP_001035207.1. NM_001040118.2. NP_001128662.1. NM_001135190.1. NP_056057.2. NM_015242.4. |
| UniGene | Hs.503165. |
3D structure databases | |
| ProteinModelPortal | Q96P48. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q96P48. 9 interactions. |
| MINT | MINT-1395507. |
Polymorphism databases | |
| DMDM | 226694321. |
Proteomic databases | |
| PaxDb | Q96P48. |
| PRIDE | Q96P48. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000334211; ENSP00000335506; ENSG00000186635. ENST00000359373; ENSP00000352332; ENSG00000186635. ENST00000393605; ENSP00000377230; ENSG00000186635. ENST00000393609; ENSP00000377233; ENSG00000186635. ENST00000429686; ENSP00000403127; ENSG00000186635. ENST00000455638; ENSP00000390461; ENSG00000186635. |
| GeneID | 116985. |
| KEGG | hsa:116985. |
| UCSC | uc001osr.3. human. uc001oss.3. human. uc001osv.3. human. |
Organism-specific databases | |
| CTD | 116985. |
| GeneCards | GC11M072396. |
| H-InvDB | HIX0079401. HIX0171326. |
| HGNC | HGNC:16925. ARAP1. |
| HPA | CAB020703. |
| MIM | 606646. gene. |
| neXtProt | NX_Q96P48. |
| PharmGKB | PA164715867. |
| HUGE | Search... |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | COG5347. |
| HOGENOM | HOG000246988. |
| HOVERGEN | HBG106625. |
| KO | K12490. |
| OMA | VKCIAKA. |
| OrthoDB | EOG4HMJ8F. |
Enzyme and pathway databases | |
| Reactome | REACT_111102. Signal Transduction. |
Gene expression databases | |
| ArrayExpress | Q96P48. |
| Bgee | Q96P48. |
| CleanEx | HS_ARAP1. |
| Genevestigator | Q96P48. |
| GermOnline | ENSG00000186635. Homo sapiens. |
Family and domain databases | |
| Gene3D | 1.10.150.50. 1 hit. 1.10.555.10. 1 hit. 2.30.29.30. 4 hits. |
| InterPro | IPR001164. ArfGAP. IPR011993. PH_like_dom. IPR001849. Pleckstrin_homology. IPR000159. Ras-assoc. IPR008936. Rho_GTPase_activation_prot. IPR000198. RhoGAP_dom. IPR001660. SAM. IPR013761. SAM/pointed. IPR021129. SAM_type1. [Graphical view] |
| Pfam | PF01412. ArfGap. 1 hit. PF00169. PH. 3 hits. PF00788. RA. 1 hit. PF00620. RhoGAP. 1 hit. PF00536. SAM_1. 1 hit. [Graphical view] |
| PRINTS | PR00405. REVINTRACTNG. |
| SMART | SM00105. ArfGap. 1 hit. SM00233. PH. 5 hits. SM00324. RhoGAP. 1 hit. SM00454. SAM. 1 hit. [Graphical view] |
| SUPFAM | SSF48350. Rho_GAP. 1 hit. SSF47769. SAM_homology. 1 hit. |
| PROSITE | PS50115. ARFGAP. 1 hit. PS50003. PH_DOMAIN. 4 hits. PS50200. RA. 1 hit. PS50238. RHOGAP. 1 hit. PS50105. SAM_DOMAIN. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChiTaRS | ARAP1. human. |
| GenomeRNAi | 116985. |
| NextBio | 80062. |
| SOURCE | Search... |
Entry information
| Entry name | ARAP1_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q96P48 Secondary accession number(s): A3KLL7 Q96L71 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 11 Human chromosome 11: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
