Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Tetratricopeptide repeat protein 25

Gene

TTC25

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Tetratricopeptide repeat protein 25
Short name:
TPR repeat protein 25
Gene namesi
Name:TTC25
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 17

Organism-specific databases

HGNCiHGNC:25280. TTC25.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA142670677.

Polymorphism and mutation databases

BioMutaiTTC25.
DMDMi145572736.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 672672Tetratricopeptide repeat protein 25PRO_0000284507Add
BLAST

Proteomic databases

EPDiQ96NG3.
MaxQBiQ96NG3.
PRIDEiQ96NG3.

PTM databases

iPTMnetiQ96NG3.

Expressioni

Gene expression databases

CleanExiHS_TTC25.
ExpressionAtlasiQ96NG3. baseline and differential.
GenevisibleiQ96NG3. HS.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
CCDC85BQ158343EBI-1046387,EBI-739674
CEP70Q8NHQ13EBI-1046387,EBI-739624
GOLGA2Q083793EBI-1046387,EBI-618309
KRT40Q6A1623EBI-1046387,EBI-10171697
MEOX2A4D1273EBI-1046387,EBI-10172134
MKRN3Q130643EBI-1046387,EBI-2340269
MYOGP151733EBI-1046387,EBI-3906629
NECAB2H3BTW23EBI-1046387,EBI-10172876

Protein-protein interaction databases

BioGridi123671. 20 interactions.
IntActiQ96NG3. 10 interactions.
MINTiMINT-4716261.

Structurei

3D structure databases

ProteinModelPortaliQ96NG3.
SMRiQ96NG3. Positions 19-110, 320-470.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati13 – 4634TPR 1Add
BLAST
Repeati48 – 8033TPR 2Add
BLAST
Repeati81 – 11434TPR 3Add
BLAST
Repeati275 – 31137TPR 4Add
BLAST
Repeati320 – 35334TPR 5Add
BLAST
Repeati360 – 39334TPR 6Add
BLAST
Repeati397 – 43034TPR 7Add
BLAST
Repeati437 – 47034TPR 8Add
BLAST

Sequence similaritiesi

Contains 8 TPR repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, TPR repeat

Phylogenomic databases

GeneTreeiENSGT00390000007911.
HOGENOMiHOG000068108.
HOVERGENiHBG106810.
InParanoidiQ96NG3.
OMAiCYLKMGD.
OrthoDBiEOG77M8P2.
PhylomeDBiQ96NG3.

Family and domain databases

Gene3Di1.25.40.10. 3 hits.
InterProiIPR013026. TPR-contain_dom.
IPR011990. TPR-like_helical_dom.
IPR019734. TPR_repeat.
[Graphical view]
PfamiPF13181. TPR_8. 1 hit.
[Graphical view]
SMARTiSM00028. TPR. 7 hits.
[Graphical view]
SUPFAMiSSF48452. SSF48452. 2 hits.
PROSITEiPS50005. TPR. 6 hits.
PS50293. TPR_REGION. 2 hits.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q96NG3-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MSDPEGETLR STFPSYMAEG ERLYLCGEFS KAAQSFSNAL YLQDGDKNCL
60 70 80 90 100
VARSKCFLKM GDLERSLKDA EASLQSDPAF CKGILQKAET LYTMGDFEFA
110 120 130 140 150
LVFYHRGYKL RPDREFRVGI QKAQEAINNS VGSPSSIKLE NKGDLSFLSK
160 170 180 190 200
QAENIKAQQK PQPMKHLLHP TKGEPKWKAS LKSEKTVRQL LGELYVDKEY
210 220 230 240 250
LEKLLLDEDL IKGTMKGGLT VEDLIMTGIN YLDTHSNFWR QQKPIYARER
260 270 280 290 300
DRKLMQEKWL RDHKRRPSQT AHYILKSLED IDMLLTSGSA EGSLQKAEKV
310 320 330 340 350
LKKVLEWNKE EVPNKDELVG NLYSCIGNAQ IELGQMEAAL QSHRKDLEIA
360 370 380 390 400
KEYDLPDAKS RALDNIGRVF ARVGKFQQAI DTWEEKIPLA KTTLEKTWLF
410 420 430 440 450
HEIGRCYLEL DQAWQAQNYG EKSQQCAEEE GDIEWQLNAS VLVAQAQVKL
460 470 480 490 500
RDFESAVNNF EKALERAKLV HNNEAQQAII SALDDANKGI IRELRKTNYV
510 520 530 540 550
ENLKEKSEGE ASLYEDRIIT REKDMRRVRD EPEKVVKQWD HSEDEKETDE
560 570 580 590 600
DDEAFGEALQ SPASGKQSVE AGKARSDLGA VAKGLSGELG TRSGETGRKL
610 620 630 640 650
LEAGRRESRE IYRRPSGELE QRLSGEFSRQ EPEELKKLSE VGRREPEELG
660 670
KTQFGEIGET KKTGNEMEKE YE
Length:672
Mass (Da):76,655
Last modified:April 17, 2007 - v2
Checksum:i15683F576C1DAC35
GO
Isoform 2 (identifier: Q96NG3-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     209-292: DLIKGTMKGG...MLLTSGSAEG → VTFLMQNREP...PRRKGTLSGN
     293-672: Missing.

Note: No experimental confirmation available.
Show »
Length:292
Mass (Da):33,043
Checksum:i70B66ADD5BA664A6
GO

Sequence cautioni

The sequence AAH67297.1 differs from that shown. Reason: Frameshift at position 661. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti43 – 431Q → K in AAH25390 (PubMed:15489334).Curated
Sequence conflicti244 – 2441P → L in BAB70936 (PubMed:14702039).Curated

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti4 – 41P → S.
Corresponds to variant rs34516580 [ dbSNP | Ensembl ].
VAR_031758
Natural varianti18 – 181A → G.
Corresponds to variant rs35516909 [ dbSNP | Ensembl ].
VAR_031759

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei209 – 29284DLIKG…GSAEG → VTFLMQNREPLTTLAEFLPE LGNSSKPLTRGKKRSLWQKP PWRRPGCSTRSAAATWSWTR PGRPRIMARSPSSVPRRKGT LSGN in isoform 2. 1 PublicationVSP_024548Add
BLAST
Alternative sequencei293 – 672380Missing in isoform 2. 1 PublicationVSP_024549Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL136760 mRNA. Translation: CAB66694.1.
AK055498 mRNA. Translation: BAB70936.1.
BC025390 mRNA. Translation: AAH25390.1.
BC067297 mRNA. Translation: AAH67297.1. Frameshift.
CCDSiCCDS74063.1. [Q96NG3-1]
RefSeqiNP_113609.1. NM_031421.3. [Q96NG3-1]
UniGeneiHs.201134.

Genome annotation databases

EnsembliENST00000377540; ENSP00000478589; ENSG00000204815. [Q96NG3-1]
GeneIDi83538.
KEGGihsa:83538.
UCSCiuc032fin.2. human. [Q96NG3-1]

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL136760 mRNA. Translation: CAB66694.1.
AK055498 mRNA. Translation: BAB70936.1.
BC025390 mRNA. Translation: AAH25390.1.
BC067297 mRNA. Translation: AAH67297.1. Frameshift.
CCDSiCCDS74063.1. [Q96NG3-1]
RefSeqiNP_113609.1. NM_031421.3. [Q96NG3-1]
UniGeneiHs.201134.

3D structure databases

ProteinModelPortaliQ96NG3.
SMRiQ96NG3. Positions 19-110, 320-470.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi123671. 20 interactions.
IntActiQ96NG3. 10 interactions.
MINTiMINT-4716261.

PTM databases

iPTMnetiQ96NG3.

Polymorphism and mutation databases

BioMutaiTTC25.
DMDMi145572736.

Proteomic databases

EPDiQ96NG3.
MaxQBiQ96NG3.
PRIDEiQ96NG3.

Protocols and materials databases

DNASUi83538.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000377540; ENSP00000478589; ENSG00000204815. [Q96NG3-1]
GeneIDi83538.
KEGGihsa:83538.
UCSCiuc032fin.2. human. [Q96NG3-1]

Organism-specific databases

CTDi83538.
GeneCardsiTTC25.
HGNCiHGNC:25280. TTC25.
neXtProtiNX_Q96NG3.
PharmGKBiPA142670677.
GenAtlasiSearch...

Phylogenomic databases

GeneTreeiENSGT00390000007911.
HOGENOMiHOG000068108.
HOVERGENiHBG106810.
InParanoidiQ96NG3.
OMAiCYLKMGD.
OrthoDBiEOG77M8P2.
PhylomeDBiQ96NG3.

Miscellaneous databases

GeneWikiiTTC25.
GenomeRNAii83538.
PROiQ96NG3.

Gene expression databases

CleanExiHS_TTC25.
ExpressionAtlasiQ96NG3. baseline and differential.
GenevisibleiQ96NG3. HS.

Family and domain databases

Gene3Di1.25.40.10. 3 hits.
InterProiIPR013026. TPR-contain_dom.
IPR011990. TPR-like_helical_dom.
IPR019734. TPR_repeat.
[Graphical view]
PfamiPF13181. TPR_8. 1 hit.
[Graphical view]
SMARTiSM00028. TPR. 7 hits.
[Graphical view]
SUPFAMiSSF48452. SSF48452. 2 hits.
PROSITEiPS50005. TPR. 6 hits.
PS50293. TPR_REGION. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
    Tissue: Testis.
  2. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
    Tissue: Brain.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
    Tissue: Testis.

Entry informationi

Entry nameiTTC25_HUMAN
AccessioniPrimary (citable) accession number: Q96NG3
Secondary accession number(s): Q6NX40, Q6PJ04, Q9H0K5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 17, 2007
Last sequence update: April 17, 2007
Last modified: June 8, 2016
This is version 119 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 17
    Human chromosome 17: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.