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Protein

Uncharacterized protein C2orf50

Gene

C2orf50

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein C2orf50
Gene namesi
Name:C2orf50
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 2

Organism-specific databases

HGNCiHGNC:26324. C2orf50.

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA162379180.

Polymorphism and mutation databases

BioMutaiC2orf50.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 162162Uncharacterized protein C2orf50PRO_0000307802Add
BLAST

Proteomic databases

PaxDbiQ96LR7.
PRIDEiQ96LR7.

Expressioni

Gene expression databases

BgeeiQ96LR7.
CleanExiHS_C2orf50.
GenevisibleiQ96LR7. HS.

Organism-specific databases

HPAiHPA062894.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
GSTA4O152173EBI-10290932,EBI-752440

Protein-protein interaction databases

BioGridi126256. 2 interactions.
IntActiQ96LR7. 1 interaction.

Structurei

3D structure databases

ProteinModelPortaliQ96LR7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG410IY60. Eukaryota.
ENOG4111X0Y. LUCA.
GeneTreeiENSGT00390000008173.
HOGENOMiHOG000007988.
HOVERGENiHBG106851.
InParanoidiQ96LR7.
OMAiRRGQQRW.
OrthoDBiEOG7B8S5J.
PhylomeDBiQ96LR7.
TreeFamiTF329466.

Sequencei

Sequence statusi: Complete.

Q96LR7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGSHPTPGLQ RTTSAGYRLP PTRPPASVSP AARGGPMASR GLAGGCQAPQ
60 70 80 90 100
ALKAQRVAQG AACDGVQQDQ LWRELLEAER RGQQRWIQNW SFLKDYDPMG
110 120 130 140 150
NKKEPEKLPD HVPLFSDTVP SSTNQVVGSR LDTPLGQTLI RMDFFFTEGA
160
RKKKLEDQMQ PI
Length:162
Mass (Da):17,838
Last modified:December 1, 2001 - v1
Checksum:i51E319A606889CF6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK057872 mRNA. Translation: BAB71603.1.
AK292828 mRNA. Translation: BAF85517.1.
CH471053 Genomic DNA. Translation: EAX00943.1.
CH471053 Genomic DNA. Translation: EAX00944.1.
BC120930 mRNA. Translation: AAI20931.1.
CCDSiCCDS1678.1.
RefSeqiNP_872306.1. NM_182500.2.
XP_006711920.1. XM_006711857.2.
XP_006711921.1. XM_006711858.2.
XP_006711922.1. XM_006711859.2.
UniGeneiHs.406894.

Genome annotation databases

EnsembliENST00000381585; ENSP00000370997; ENSG00000150873.
ENST00000405022; ENSP00000384186; ENSG00000150873.
GeneIDi130813.
KEGGihsa:130813.
UCSCiuc010yji.1. human.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK057872 mRNA. Translation: BAB71603.1.
AK292828 mRNA. Translation: BAF85517.1.
CH471053 Genomic DNA. Translation: EAX00943.1.
CH471053 Genomic DNA. Translation: EAX00944.1.
BC120930 mRNA. Translation: AAI20931.1.
CCDSiCCDS1678.1.
RefSeqiNP_872306.1. NM_182500.2.
XP_006711920.1. XM_006711857.2.
XP_006711921.1. XM_006711858.2.
XP_006711922.1. XM_006711859.2.
UniGeneiHs.406894.

3D structure databases

ProteinModelPortaliQ96LR7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi126256. 2 interactions.
IntActiQ96LR7. 1 interaction.

Polymorphism and mutation databases

BioMutaiC2orf50.

Proteomic databases

PaxDbiQ96LR7.
PRIDEiQ96LR7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000381585; ENSP00000370997; ENSG00000150873.
ENST00000405022; ENSP00000384186; ENSG00000150873.
GeneIDi130813.
KEGGihsa:130813.
UCSCiuc010yji.1. human.

Organism-specific databases

CTDi130813.
GeneCardsiC2orf50.
HGNCiHGNC:26324. C2orf50.
HPAiHPA062894.
neXtProtiNX_Q96LR7.
PharmGKBiPA162379180.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiENOG410IY60. Eukaryota.
ENOG4111X0Y. LUCA.
GeneTreeiENSGT00390000008173.
HOGENOMiHOG000007988.
HOVERGENiHBG106851.
InParanoidiQ96LR7.
OMAiRRGQQRW.
OrthoDBiEOG7B8S5J.
PhylomeDBiQ96LR7.
TreeFamiTF329466.

Miscellaneous databases

GenomeRNAii130813.
PROiQ96LR7.

Gene expression databases

BgeeiQ96LR7.
CleanExiHS_C2orf50.
GenevisibleiQ96LR7. HS.

Family and domain databases

ProtoNetiSearch...

Publicationsi

  1. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Brain and Trachea.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].

Entry informationi

Entry nameiCB050_HUMAN
AccessioniPrimary (citable) accession number: Q96LR7
Secondary accession number(s): A8K9W3, D6W503
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 23, 2007
Last sequence update: December 1, 2001
Last modified: June 8, 2016
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 2
    Human chromosome 2: entries, gene names and cross-references to MIM

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.