Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Uncharacterized protein C12orf42

Gene

C12orf42

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein C12orf42
Gene namesi
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640 Componenti: Chromosome 12

Organism-specific databases

HGNCiHGNC:24729. C12orf42.

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA143485372.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 360360Uncharacterized protein C12orf42PRO_0000274274Add
BLAST

Proteomic databases

PaxDbiQ96LP6.
PRIDEiQ96LP6.

PTM databases

PhosphoSiteiQ96LP6.

Expressioni

Gene expression databases

BgeeiQ96LP6.
CleanExiHS_C12orf42.
ExpressionAtlasiQ96LP6. baseline and differential.
GenevisibleiQ96LP6. HS.

Organism-specific databases

HPAiHPA039909.

Structurei

3D structure databases

ProteinModelPortaliQ96LP6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiNOG39516.
GeneTreeiENSGT00390000015477.
HOGENOMiHOG000169664.
HOVERGENiHBG081237.
InParanoidiQ96LP6.
OMAiFPERTQN.
OrthoDBiEOG71VSTB.
PhylomeDBiQ96LP6.
TreeFamiTF338230.

Family and domain databases

InterProiIPR029288. DUF4607.
[Graphical view]
PfamiPF15380. DUF4607. 1 hit.
[Graphical view]

Sequences (3)i

Sequence statusi: Complete.

This entry describes 3 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q96LP6-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MSTVICMKQR EEEFLLTIRP FANRMQKSPC YIPIVSSATL WDRSTPSAKH
60 70 80 90 100
IPCYERTSVP CSRFINHMKN FSESPKFRSL HFLNFPVFPE RTQNSMACKR
110 120 130 140 150
LLHTCQYIVP RCSVSTVSFD EESYEEFRSS PAPSSETDEA PLIFTARGET
160 170 180 190 200
EERARGAPKQ AWNSSFLEQL VKKPNWAHSV NPVHLEAQGI HISRHTRPKG
210 220 230 240 250
QPLSSPKKNS GSAARPSTAI GLCRRSQTPG ALQSTGPSNT ELEPEERMAV
260 270 280 290 300
PAGAQAHPDD IQSRLLGASG NPVGKGAVAM APEMLPKHPH TPRDRRPQAD
310 320 330 340 350
TSLHGNLAGA PLPLLAGAST HFPSKRLIKV CSSAPPRPTR RFHTVCSQAL
360
SRPVVNAHLH
Length:360
Mass (Da):39,738
Last modified:May 18, 2010 - v2
Checksum:i1935263A48633526
GO
Isoform 2 (identifier: Q96LP6-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-95: Missing.

Note: No experimental confirmation available.
Show »
Length:265
Mass (Da):28,584
Checksum:iD5B354AAD1F5D448
GO
Isoform 3 (identifier: Q96LP6-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     87-107: VFPERTQNSMACKRLLHTCQY → GSHHGQATQKLQGAMVLHLEE
     108-360: Missing.

Note: No experimental confirmation available. May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay.
Show »
Length:107
Mass (Da):12,366
Checksum:i544BEC0EA49969F5
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti38 – 381A → D in BC039352 (PubMed:15489334).Curated

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti11 – 111E → D.2 Publications
Corresponds to variant rs10778257 [ dbSNP | Ensembl ].
VAR_030229
Natural varianti182 – 1821P → R.
Corresponds to variant rs7484376 [ dbSNP | Ensembl ].
VAR_030230

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 9595Missing in isoform 2. 1 PublicationVSP_022691Add
BLAST
Alternative sequencei87 – 10721VFPER…HTCQY → GSHHGQATQKLQGAMVLHLE E in isoform 3. 1 PublicationVSP_022692Add
BLAST
Alternative sequencei108 – 360253Missing in isoform 3. 1 PublicationVSP_022693Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK058052 mRNA. Translation: BAB71641.1.
AC084364 Genomic DNA. No translation available.
AC090000 Genomic DNA. No translation available.
AC126176 Genomic DNA. No translation available.
BC039352 mRNA. No translation available.
BC044617 mRNA. Translation: AAH44617.1.
BC117392 mRNA. Translation: AAI17393.1.
BC117394 mRNA. Translation: AAI17395.1.
CCDSiCCDS44963.1. [Q96LP6-1]
RefSeqiNP_001092806.1. NM_001099336.2. [Q96LP6-1]
NP_001265348.1. NM_001278419.1. [Q96LP6-2]
NP_001265349.1. NM_001278420.1. [Q96LP6-2]
NP_940923.2. NM_198521.3. [Q96LP6-1]
UniGeneiHs.534649.

Genome annotation databases

EnsembliENST00000378113; ENSP00000367353; ENSG00000179088. [Q96LP6-1]
ENST00000547347; ENSP00000446908; ENSG00000179088. [Q96LP6-3]
ENST00000548883; ENSP00000447908; ENSG00000179088. [Q96LP6-1]
GeneIDi374470.
KEGGihsa:374470.
UCSCiuc001tjt.2. human. [Q96LP6-1]

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK058052 mRNA. Translation: BAB71641.1.
AC084364 Genomic DNA. No translation available.
AC090000 Genomic DNA. No translation available.
AC126176 Genomic DNA. No translation available.
BC039352 mRNA. No translation available.
BC044617 mRNA. Translation: AAH44617.1.
BC117392 mRNA. Translation: AAI17393.1.
BC117394 mRNA. Translation: AAI17395.1.
CCDSiCCDS44963.1. [Q96LP6-1]
RefSeqiNP_001092806.1. NM_001099336.2. [Q96LP6-1]
NP_001265348.1. NM_001278419.1. [Q96LP6-2]
NP_001265349.1. NM_001278420.1. [Q96LP6-2]
NP_940923.2. NM_198521.3. [Q96LP6-1]
UniGeneiHs.534649.

3D structure databases

ProteinModelPortaliQ96LP6.
ModBaseiSearch...
MobiDBiSearch...

PTM databases

PhosphoSiteiQ96LP6.

Proteomic databases

PaxDbiQ96LP6.
PRIDEiQ96LP6.

Protocols and materials databases

DNASUi374470.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000378113; ENSP00000367353; ENSG00000179088. [Q96LP6-1]
ENST00000547347; ENSP00000446908; ENSG00000179088. [Q96LP6-3]
ENST00000548883; ENSP00000447908; ENSG00000179088. [Q96LP6-1]
GeneIDi374470.
KEGGihsa:374470.
UCSCiuc001tjt.2. human. [Q96LP6-1]

Organism-specific databases

CTDi374470.
GeneCardsiGC12M103631.
HGNCiHGNC:24729. C12orf42.
HPAiHPA039909.
neXtProtiNX_Q96LP6.
PharmGKBiPA143485372.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiNOG39516.
GeneTreeiENSGT00390000015477.
HOGENOMiHOG000169664.
HOVERGENiHBG081237.
InParanoidiQ96LP6.
OMAiFPERTQN.
OrthoDBiEOG71VSTB.
PhylomeDBiQ96LP6.
TreeFamiTF338230.

Miscellaneous databases

GenomeRNAii374470.
NextBioi100205.
PROiQ96LP6.

Gene expression databases

BgeeiQ96LP6.
CleanExiHS_C12orf42.
ExpressionAtlasiQ96LP6. baseline and differential.
GenevisibleiQ96LP6. HS.

Family and domain databases

InterProiIPR029288. DUF4607.
[Graphical view]
PfamiPF15380. DUF4607. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), VARIANT ASP-11.
    Tissue: Testis.
  2. "The finished DNA sequence of human chromosome 12."
    Scherer S.E., Muzny D.M., Buhay C.J., Chen R., Cree A., Ding Y., Dugan-Rocha S., Gill R., Gunaratne P., Harris R.A., Hawes A.C., Hernandez J., Hodgson A.V., Hume J., Jackson A., Khan Z.M., Kovar-Smith C., Lewis L.R.
    , Lozado R.J., Metzker M.L., Milosavljevic A., Miner G.R., Montgomery K.T., Morgan M.B., Nazareth L.V., Scott G., Sodergren E., Song X.-Z., Steffen D., Lovering R.C., Wheeler D.A., Worley K.C., Yuan Y., Zhang Z., Adams C.Q., Ansari-Lari M.A., Ayele M., Brown M.J., Chen G., Chen Z., Clerc-Blankenburg K.P., Davis C., Delgado O., Dinh H.H., Draper H., Gonzalez-Garay M.L., Havlak P., Jackson L.R., Jacob L.S., Kelly S.H., Li L., Li Z., Liu J., Liu W., Lu J., Maheshwari M., Nguyen B.-V., Okwuonu G.O., Pasternak S., Perez L.M., Plopper F.J.H., Santibanez J., Shen H., Tabor P.E., Verduzco D., Waldron L., Wang Q., Williams G.A., Zhang J., Zhou J., Allen C.C., Amin A.G., Anyalebechi V., Bailey M., Barbaria J.A., Bimage K.E., Bryant N.P., Burch P.E., Burkett C.E., Burrell K.L., Calderon E., Cardenas V., Carter K., Casias K., Cavazos I., Cavazos S.R., Ceasar H., Chacko J., Chan S.N., Chavez D., Christopoulos C., Chu J., Cockrell R., Cox C.D., Dang M., Dathorne S.R., David R., Davis C.M., Davy-Carroll L., Deshazo D.R., Donlin J.E., D'Souza L., Eaves K.A., Egan A., Emery-Cohen A.J., Escotto M., Flagg N., Forbes L.D., Gabisi A.M., Garza M., Hamilton C., Henderson N., Hernandez O., Hines S., Hogues M.E., Huang M., Idlebird D.G., Johnson R., Jolivet A., Jones S., Kagan R., King L.M., Leal B., Lebow H., Lee S., LeVan J.M., Lewis L.C., London P., Lorensuhewa L.M., Loulseged H., Lovett D.A., Lucier A., Lucier R.L., Ma J., Madu R.C., Mapua P., Martindale A.D., Martinez E., Massey E., Mawhiney S., Meador M.G., Mendez S., Mercado C., Mercado I.C., Merritt C.E., Miner Z.L., Minja E., Mitchell T., Mohabbat F., Mohabbat K., Montgomery B., Moore N., Morris S., Munidasa M., Ngo R.N., Nguyen N.B., Nickerson E., Nwaokelemeh O.O., Nwokenkwo S., Obregon M., Oguh M., Oragunye N., Oviedo R.J., Parish B.J., Parker D.N., Parrish J., Parks K.L., Paul H.A., Payton B.A., Perez A., Perrin W., Pickens A., Primus E.L., Pu L.-L., Puazo M., Quiles M.M., Quiroz J.B., Rabata D., Reeves K., Ruiz S.J., Shao H., Sisson I., Sonaike T., Sorelle R.P., Sutton A.E., Svatek A.F., Svetz L.A., Tamerisa K.S., Taylor T.R., Teague B., Thomas N., Thorn R.D., Trejos Z.Y., Trevino B.K., Ukegbu O.N., Urban J.B., Vasquez L.I., Vera V.A., Villasana D.M., Wang L., Ward-Moore S., Warren J.T., Wei X., White F., Williamson A.L., Wleczyk R., Wooden H.S., Wooden S.H., Yen J., Yoon L., Yoon V., Zorrilla S.E., Nelson D., Kucherlapati R., Weinstock G., Gibbs R.A.
    Nature 440:346-351(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1; 2 AND 3), VARIANT ASP-11.
    Tissue: Testis.

Entry informationi

Entry nameiCL042_HUMAN
AccessioniPrimary (citable) accession number: Q96LP6
Secondary accession number(s): Q49A64, Q4G0S2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 6, 2007
Last sequence update: May 18, 2010
Last modified: June 24, 2015
This is version 73 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 12
    Human chromosome 12: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.