Q96L73 (NSD1_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 126.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific EC=2.1.1.43 Alternative name(s): Androgen receptor coactivator 267 kDa protein Androgen receptor-associated protein of 267 kDa H3-K36-HMTase H4-K20-HMTase Lysine N-methyltransferase 3B Nuclear receptor-binding SET domain-containing protein 1 Short name=NR-binding SET domain-containing protein | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 2696 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Histone methyltransferase. Preferentially methylates 'Lys-36' of histone H3 and 'Lys-20' of histone H4 (in vitro). Transcriptional intermediary factor capable of both negatively or positively influencing transcription, depending on the cellular context. Ref.12 |
| Catalytic activity | S-adenosyl-L-methionine + L-lysine-[histone] = S-adenosyl-L-homocysteine + N(6)-methyl-L-lysine-[histone]. Ref.12 |
| Subunit structure | Interacts with the ligand-binding domains of RARA and THRA in the absence of ligand; in the presence of ligand the interaction is severely disrupted but some binding still occurs. Interacts with the ligand-binding domains of RXRA and ESRRA only in the presence of ligand. Interacts with ZNF496 By similarity. Interacts with AR DNA- and ligand-binding domains. Ref.1 |
| Subcellular location | Nucleus. Chromosome Probable. |
| Tissue specificity | Expressed in the fetal/adult brain, kidney, skeletal muscle, spleen, and the thymus, and faintly in the lung. |
| Involvement in disease | Sotos syndrome 1 (SOTOS1) [MIM:117550]: A childhood overgrowth syndrome characterized by pre- and postnatal overgrowth, developmental delay, mental retardation, advanced bone age, and abnormal craniofacial morphology including macrodolichocephaly with frontal bossing, frontoparietal sparseness of hair, apparent hypertelorism, downslanting palpebral fissures, and facial flushing. Common oral findings include: premature eruption of teeth; high, arched palate; pointed chin and, more rarely, prognathism. Weaver syndrome 1 (WVS1) [MIM:277590]: A syndrome of accelerated growth and osseous maturation, unusual craniofacial appearance, hoarse and low-pitched cry, and hypertonia with camptodactyly. Distinguishing features of Weaver syndrome include broad forehead and face, ocular hypertelorism, prominent wide philtrum, micrognathia, deep horizontal chin groove, and deep-set nails. In addition, carpal bone development is advanced over the rest of the hand. Beckwith-Wiedemann syndrome (BWS) [MIM:130650]: A disorder characterized by anterior abdominal wall defects including exomphalos (omphalocele), pre- and postnatal overgrowth, and macroglossia. Additional less frequent complications include specific developmental defects and a predisposition to embryonal tumors. A chromosomal aberration involving NSD1 is found in childhood acute myeloid leukemia. Translocation t(5;11)(q35;p15.5) with NUP98. A chromosomal aberration involving NSD1 is found in an adult form of myelodysplastic syndrome (MDS). Insertion of NUP98 into NSD1 generates a NUP98-NSD1 fusion product. |
| Sequence similarities | Belongs to the histone-lysine methyltransferase family. Contains 1 AWS domain. Contains 4 PHD-type zinc fingers. Contains 1 post-SET domain. Contains 2 PWWP domains. Contains 1 SET domain. |
Ontologies
Alternative products
| This entry describes 3 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q96L73-1) Also known as: ARA267-beta; This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q96L73-2) Also known as: ARA267-alpha; The sequence of this isoform differs from the canonical sequence as follows: 1-269: Missing. 270-279: QLNSINLSFQ → MPLKTRTALS | ||||||
| Isoform 3 (identifier: Q96L73-3) The sequence of this isoform differs from the canonical sequence as follows: 310-412: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||||||||||||||||||||||||||||||||||
Molecule processing | |||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 2696 | 2696 | Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific | PRO_0000186070 | |||||||||||||||||||||||||||||||||||||||
Regions | |||||||||||||||||||||||||||||||||||||||||||
| Domain | 323 – 388 | 66 | PWWP 1 | ||||||||||||||||||||||||||||||||||||||||
| Domain | 1756 – 1818 | 63 | PWWP 2 | ||||||||||||||||||||||||||||||||||||||||
| Domain | 1890 – 1940 | 51 | AWS | ||||||||||||||||||||||||||||||||||||||||
| Domain | 1941 – 2063 | 123 | SET | ||||||||||||||||||||||||||||||||||||||||
| Domain | 2066 – 2082 | 17 | Post-SET | ||||||||||||||||||||||||||||||||||||||||
| Zinc finger | 1543 – 1589 | 47 | PHD-type 1 | ||||||||||||||||||||||||||||||||||||||||
| Zinc finger | 1590 – 1646 | 57 | PHD-type 2 | ||||||||||||||||||||||||||||||||||||||||
| Zinc finger | 1707 – 1751 | 45 | PHD-type 3 | ||||||||||||||||||||||||||||||||||||||||
| Zinc finger | 2118 – 2165 | 48 | PHD-type 4; atypical | ||||||||||||||||||||||||||||||||||||||||
| Region | 1952 – 1954 | 3 | S-adenosyl-L-methionine binding | ||||||||||||||||||||||||||||||||||||||||
| Region | 1994 – 1997 | 4 | S-adenosyl-L-methionine binding | ||||||||||||||||||||||||||||||||||||||||
| Region | 2020 – 2021 | 2 | S-adenosyl-L-methionine binding | ||||||||||||||||||||||||||||||||||||||||
| Region | 2060 – 2066 | 7 | Inhibits enzyme activity in the absence of bound histone | ||||||||||||||||||||||||||||||||||||||||
| Compositional bias | 2207 – 2421 | 215 | Pro-rich | ||||||||||||||||||||||||||||||||||||||||
Sites | |||||||||||||||||||||||||||||||||||||||||||
| Binding site | 2065 | 1 | S-adenosyl-L-methionine | ||||||||||||||||||||||||||||||||||||||||
| Binding site | 2071 | 1 | S-adenosyl-L-methionine | ||||||||||||||||||||||||||||||||||||||||
Amino acid modifications | |||||||||||||||||||||||||||||||||||||||||||
| Modified residue | 483 | 1 | Phosphoserine Ref.11 | ||||||||||||||||||||||||||||||||||||||||
| Modified residue | 486 | 1 | Phosphoserine Ref.11 | ||||||||||||||||||||||||||||||||||||||||
| Modified residue | 766 | 1 | Phosphoserine Ref.7 | ||||||||||||||||||||||||||||||||||||||||
| Modified residue | 2462 | 1 | Phosphothreonine Ref.10 | ||||||||||||||||||||||||||||||||||||||||
| Modified residue | 2471 | 1 | Phosphoserine Ref.8 | ||||||||||||||||||||||||||||||||||||||||
Natural variations | |||||||||||||||||||||||||||||||||||||||||||
| Alternative sequence | 1 – 269 | 269 | Missing in isoform 2. | VSP_007682 | |||||||||||||||||||||||||||||||||||||||
| Alternative sequence | 270 – 279 | 10 | QLNSINLSFQ → MPLKTRTALS in isoform 2. | VSP_007683 | |||||||||||||||||||||||||||||||||||||||
| Alternative sequence | 310 – 412 | 103 | Missing in isoform 3. | VSP_007684 | |||||||||||||||||||||||||||||||||||||||
| Natural variant | 614 | 1 | V → L. Ref.13 Corresponds to variant rs3733875 [ dbSNP | Ensembl ]. | VAR_015775 | |||||||||||||||||||||||||||||||||||||||
| Natural variant | 691 | 1 | A → T. Ref.13 Corresponds to variant rs28932177 [ dbSNP | Ensembl ]. | VAR_015776 | |||||||||||||||||||||||||||||||||||||||
| Natural variant | 726 | 1 | S → P. Ref.13 Ref.15 Corresponds to variant rs28932178 [ dbSNP | Ensembl ]. | VAR_015777 | |||||||||||||||||||||||||||||||||||||||
| Natural variant | 1036 | 1 | A → P. Ref.13 Corresponds to variant rs28932179 [ dbSNP | Ensembl ]. | VAR_015778 | |||||||||||||||||||||||||||||||||||||||
| Natural variant | 1091 | 1 | L → I. Ref.13 Corresponds to variant rs35597015 [ dbSNP | Ensembl ]. | VAR_015779 | |||||||||||||||||||||||||||||||||||||||
| Natural variant | 1616 | 1 | H → L in SOTOS1. Ref.13 | VAR_015780 | |||||||||||||||||||||||||||||||||||||||
| Natural variant | 1637 | 1 | L → P in SOTOS1. Ref.13 | VAR_015781 | |||||||||||||||||||||||||||||||||||||||
| Natural variant | 1674 | 1 | C → W in SOTOS1. Ref.13 | VAR_015782 | |||||||||||||||||||||||||||||||||||||||
| Natural variant | 1687 | 1 | I → N in SOTOS1. Ref.14 | VAR_015783 | |||||||||||||||||||||||||||||||||||||||
| Natural variant | 1792 | 1 | G → V in SOTOS1. Ref.13 | VAR_015784 | |||||||||||||||||||||||||||||||||||||||
| Natural variant | 1925 | 1 | C → R in SOTOS1. Ref.13 | VAR_015785 | |||||||||||||||||||||||||||||||||||||||
| Natural variant | 1955 | 1 | G → D in SOTOS1. Ref.14 | VAR_015786 | |||||||||||||||||||||||||||||||||||||||
| Natural variant | 1984 | 1 | R → Q in SOTOS1; loss of enzyme activity. Ref.12 Ref.14 | VAR_015787 | |||||||||||||||||||||||||||||||||||||||
| Natural variant | 1997 | 1 | Y → C in WVS1. Ref.14 | VAR_015788 | |||||||||||||||||||||||||||||||||||||||
| Natural variant | 2005 | 1 | R → Q in SOTOS1; strongly reduced enzyme activity. Ref.12 Ref.13 | VAR_015789 | |||||||||||||||||||||||||||||||||||||||
| Natural variant | 2017 | 1 | R → Q in SOTOS1; loss of enzyme activity. Ref.12 Ref.13 | VAR_015790 | |||||||||||||||||||||||||||||||||||||||
| Natural variant | 2017 | 1 | R → W in SOTOS1. Ref.14 | VAR_015791 | |||||||||||||||||||||||||||||||||||||||
| Natural variant | 2143 | 1 | H → Q in WVS1. Ref.13 | VAR_015792 | |||||||||||||||||||||||||||||||||||||||
| Natural variant | 2183 | 1 | C → S in WVS1. Ref.13 | VAR_015793 | |||||||||||||||||||||||||||||||||||||||
| Natural variant | 2250 | 1 | M → I. Ref.13 Corresponds to variant rs35848863 [ dbSNP | Ensembl ]. | VAR_015794 | |||||||||||||||||||||||||||||||||||||||
| Natural variant | 2261 | 1 | M → T. Ref.13 Corresponds to variant rs34165241 [ dbSNP | Ensembl ]. | VAR_015795 | |||||||||||||||||||||||||||||||||||||||
Experimental info | |||||||||||||||||||||||||||||||||||||||||||
| Mutagenesis | 1914 | 1 | R → C: Reduced enzyme activity. Ref.12 | ||||||||||||||||||||||||||||||||||||||||
| Mutagenesis | 1952 | 1 | R → W: Nearly abolished enzyme activity. Ref.12 | ||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 1306 | 1 | H → D in AAK92049. Ref.3 | ||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 1397 | 1 | P → Q in AAK92049. Ref.3 | ||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 1478 | 1 | A → V in AAK92049. Ref.3 | ||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 1959 – 1960 | 2 | KT → QE in AAK92049. Ref.3 | ||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 1963 | 1 | K → R in AAK92049. Ref.3 | ||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 1982 | 1 | R → M in AAK92049. Ref.3 | ||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 1986 – 1991 | 6 | RYAQEH → KHAHEN in AAK92049. Ref.3 | ||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 1995 | 1 | N → H in AAK92049. Ref.3 | ||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 2001 | 1 | L → I in AAK92049. Ref.3 | ||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 2016 | 1 | A → S in AAK92049. Ref.3 | ||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 2022 | 1 | C → S in AAK92049. Ref.3 | ||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 2030 | 1 | Q → L in AAK92049. Ref.3 | ||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 2033 | 1 | S → T in AAK92049. Ref.3 | ||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 2045 – 2046 | 2 | LS → VC in AAK92049. Ref.3 | ||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 2049 | 1 | K → P in AAK92049. Ref.3 | ||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 2061 | 1 | E → D in AAK92049. Ref.3 | ||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 2066 | 1 | G → E in AAK92049. Ref.3 | ||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 2071 | 1 | K → R in AAK92049. Ref.3 | ||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 2075 | 1 | P → S in AAK92049. Ref.3 | ||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 2304 – 2305 | 2 | TK → AQ in AAK92049. Ref.3 | ||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 2352 | 1 | R → S in AAK92049. Ref.3 | ||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 2539 | 1 | L → S in AAK92049. Ref.3 | ||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 2543 | 1 | P → S in AAK92049. Ref.3 | ||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 2567 – 2591 | 25 | PGPLS…QQLPA → QGFFTKSPALVENKGKTKWV GRPTNYLH in AAK92049. Ref.3 | ||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 2597 | 1 | G → W in AAK92049. Ref.3 | ||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 2608 – 2612 | 5 | ASLPT → PSSPN in AAK92049. Ref.3 | ||||||||||||||||||||||||||||||||||||||||
Secondary structure | |||||||||||||||||||||||||||||||||||||||||||
Helix Strand Turn | |||||||||||||||||||||||||||||||||||||||||||
| Helix | 1852 – 1863 | 12 | |||||||||||||||||||||||||||||||||||||||||
| Helix | 1889 – 1891 | 3 | |||||||||||||||||||||||||||||||||||||||||
| Beta strand | 1901 – 1903 | 3 | |||||||||||||||||||||||||||||||||||||||||
| Helix | 1912 – 1915 | 4 | |||||||||||||||||||||||||||||||||||||||||
| Turn | 1922 – 1924 | 3 | |||||||||||||||||||||||||||||||||||||||||
| Helix | 1928 – 1930 | 3 | |||||||||||||||||||||||||||||||||||||||||
| Helix | 1935 – 1938 | 4 | |||||||||||||||||||||||||||||||||||||||||
| Beta strand | 1944 – 1948 | 5 | |||||||||||||||||||||||||||||||||||||||||
| Beta strand | 1950 – 1960 | 11 | |||||||||||||||||||||||||||||||||||||||||
| Beta strand | 1967 – 1970 | 4 | |||||||||||||||||||||||||||||||||||||||||
| Beta strand | 1973 – 1976 | 4 | |||||||||||||||||||||||||||||||||||||||||
| Helix | 1978 – 1990 | 13 | |||||||||||||||||||||||||||||||||||||||||
| Beta strand | 1998 – 2002 | 5 | |||||||||||||||||||||||||||||||||||||||||
| Beta strand | 2005 – 2013 | 9 | |||||||||||||||||||||||||||||||||||||||||
| Helix | 2015 – 2018 | 4 | |||||||||||||||||||||||||||||||||||||||||
| Beta strand | 2026 – 2034 | 9 | |||||||||||||||||||||||||||||||||||||||||
| Beta strand | 2037 – 2046 | 10 | |||||||||||||||||||||||||||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Identification and characterization of a novel androgen receptor coregulator ARA267-alpha in prostate cancer cells." Wang X., Yeh S., Wu G., Hsu C.-L., Wang L., Chang T., Yang Y., Guo Y., Chang C. J. Biol. Chem. 276:40417-40423(2001) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 2), INTERACTION WITH AR. |
| [2] | "Molecular characterization of NSD1, a human homologue of the mouse Nsd1 gene." Kurotaki N., Harada N., Yoshiura K., Sugano S., Niikawa N., Matsumoto N. Gene 279:197-204(2001) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). |
| [3] | "A novel gene, NSD1, is fused to NUP98 in the t(5;11)(q35;p15.5) in de novo childhood acute myeloid leukemia." Jaju R.J., Fidler C., Haas O.A., Strickson A.J., Watkins F., Clark K., Cross N.C., Cheng J.F., Aplan P.D., Kearney L., Boultwood J., Wainscoat J.S. Blood 98:1264-1267(2001) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 3), CHROMOSOMAL TRANSLOCATION WITH NUP98. |
| [4] | "Haploinsufficiency of NSD1 causes Sotos syndrome." Kurotaki N., Imaizumi K., Harada N., Masuno M., Kondoh T., Nagai T., Ohashi H., Naritomi K., Tsukahara M., Makita Y., Sugimoto T., Sonoda T., Hasegawa T., Chinen Y., Tomita Ha H.A., Kinoshita A., Mizuguchi T., Yoshiura Ki K. Matsumoto N.Nat. Genet. 30:365-366(2002) [PubMed] [Europe PMC] [Abstract] Cited for: INVOLVEMENT IN SOTOS1. |
| [5] | "Paradoxical NSD1 mutations in Beckwith-Wiedemann syndrome and 11p15 anomalies in Sotos syndrome." Baujat G., Rio M., Rossignol S., Sanlaville D., Lyonnet S., Le Merrer M., Munnich A., Gicquel C., Cormier-Daire V., Colleaux L. Am. J. Hum. Genet. 74:715-720(2004) [PubMed] [Europe PMC] [Abstract] Cited for: INVOLVEMENT IN SOTOS1 AND BWS. |
| [6] | "Cryptic insertion producing two NUP98/NSD1 chimeric transcripts in adult refractory anemia with an excess of blasts." La Starza R., Gorello P., Rosati R., Riezzo A., Veronese A., Ferrazzi E., Martelli M.F., Negrini M., Mecucci C. Genes Chromosomes Cancer 41:395-399(2004) [PubMed] [Europe PMC] [Abstract] Cited for: INVOLVEMENT IN MYELODYSPLASTIC SYNDROME. |
| [7] | "Toward a global characterization of the phosphoproteome in prostate cancer cells: identification of phosphoproteins in the LNCaP cell line." Giorgianni F., Zhao Y., Desiderio D.M., Beranova-Giorgianni S. Electrophoresis 28:2027-2034(2007) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-766, MASS SPECTROMETRY. Tissue: Prostate cancer. |
| [8] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-2471, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [9] | "Large-scale proteomics analysis of the human kinome." Oppermann F.S., Gnad F., Olsen J.V., Hornberger R., Greff Z., Keri G., Mann M., Daub H. Mol. Cell. Proteomics 8:1751-1764(2009) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [10] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-2462, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [11] | "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation." Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B. Sci. Signal. 4:RS3-RS3(2011) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-483 AND SER-486, MASS SPECTROMETRY. |
| [12] | "The structure of NSD1 reveals an autoregulatory mechanism underlying histone H3K36 methylation." Qiao Q., Li Y., Chen Z., Wang M., Reinberg D., Xu R.M. J. Biol. Chem. 286:8361-8368(2011) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.75 ANGSTROMS) OF 1852-2082 IN COMPLEX WITH S-ADENOSYL-L-METHIONINE AND ZINC IONS, FUNCTION, CATALYTIC ACTIVITY, MUTAGENESIS OF ARG-1914 AND ARG-1952, CHARACTERIZATION OF SOTOS1 VARIANTS GLN-1984; GLN-2005 AND GLN-2017. |
| [13] | "NSD1 mutations are the major cause of Sotos syndrome and occur in some cases of Weaver syndrome but are rare in other overgrowth phenotypes." Douglas J., Hanks S., Temple I.K., Davies S., Murray A., Upadhyaya M., Tomkins S., Hughes H.E., Cole T.R.P., Rahman N. Am. J. Hum. Genet. 72:132-143(2003) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS SOTOS1 LEU-1616; PRO-1637; TRP-1674; VAL-1792; ARG-1925; GLN-2005 AND GLN-2017, VARIANTS WVS1 GLN-2143 AND SER-2183, VARIANTS LEU-614; THR-691; PRO-726; PRO-1036; ILE-1091; ILE-2250 AND THR-2261. |
| [14] | "Spectrum of NSD1 mutations in Sotos and Weaver syndromes." Rio M., Clech L., Amiel J., Faivre L., Lyonnet S., Le Merrer M., Odent S., Lacombe D., Edery P., Brauner R., Raoul O., Gosset P., Prieur M., Vekemans M., Munnich A., Colleaux L., Cormier-Daire V. J. Med. Genet. 40:436-440(2003) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS SOTOS1 ASN-1687; ASP-1955; GLN-1984 AND TRP-2017, VARIANT WVS1 CYS-1997. |
| [15] | "DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome." Ley T.J., Mardis E.R., Ding L., Fulton B., McLellan M.D., Chen K., Dooling D., Dunford-Shore B.H., McGrath S., Hickenbotham M., Cook L., Abbott R., Larson D.E., Koboldt D.C., Pohl C., Smith S., Hawkins A., Abbott S. Wilson R.K.Nature 456:66-72(2008) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT [LARGE SCALE ANALYSIS] PRO-726. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | AF380302 mRNA. Translation: AAL27991.1. AY049721 mRNA. Translation: AAL06645.1. AF395588 mRNA. Translation: AAL40694.1. AF322907 mRNA. Translation: AAK92049.1. | ||||||||||||
| IPI | IPI00102107. IPI00173901. IPI00332367. | ||||||||||||
| RefSeq | NP_071900.2. NM_022455.4. NP_758859.1. NM_172349.2. | ||||||||||||
| UniGene | Hs.106861. | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
| ||||||||||||
| ProteinModelPortal | Q96L73. | ||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| DIP | DIP-58517N. | ||||||||||||
| IntAct | Q96L73. 3 interactions. | ||||||||||||
| STRING | 9606.ENSP00000348031. | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | Q96L73. | ||||||||||||
Polymorphism databases | |||||||||||||
| DMDM | 32469769. | ||||||||||||
Proteomic databases | |||||||||||||
| PaxDb | Q96L73. | ||||||||||||
| PRIDE | Q96L73. | ||||||||||||
Protocols and materials databases | |||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | ENST00000347982; ENSP00000343209; ENSG00000165671. ENST00000354179; ENSP00000346111; ENSG00000165671. ENST00000361032; ENSP00000354310; ENSG00000165671. ENST00000439151; ENSP00000395929; ENSG00000165671. | ||||||||||||
| GeneID | 64324. | ||||||||||||
| KEGG | hsa:64324. | ||||||||||||
| UCSC | uc003mfr.4. human. uc003mfs.1. human. uc003mft.4. human. | ||||||||||||
Organism-specific databases | |||||||||||||
| CTD | 64324. | ||||||||||||
| GeneCards | GC05P176560. | ||||||||||||
| HGNC | HGNC:14234. NSD1. | ||||||||||||
| MIM | 117550. phenotype. 130650. phenotype. 277590. phenotype. 606681. gene. | ||||||||||||
| neXtProt | NX_Q96L73. | ||||||||||||
| Orphanet | 228415. 5q35 microduplication syndrome. 238613. Beckwith-Wiedemann syndrome due to NSD1 mutation. 821. Sotos syndrome. 3447. Weaver syndrome. | ||||||||||||
| PharmGKB | PA31790. | ||||||||||||
| GenAtlas | Search... | ||||||||||||
Phylogenomic databases | |||||||||||||
| eggNOG | COG2940. | ||||||||||||
| HOGENOM | HOG000113857. | ||||||||||||
| HOVERGEN | HBG007518. | ||||||||||||
| InParanoid | Q96L73. | ||||||||||||
| KO | K15588. | ||||||||||||
| OMA | NIDKMRH. | ||||||||||||
| OrthoDB | EOG49GKFN. | ||||||||||||
| PhylomeDB | Q96L73. | ||||||||||||
Gene expression databases | |||||||||||||
| ArrayExpress | Q96L73. | ||||||||||||
| Bgee | Q96L73. | ||||||||||||
| CleanEx | HS_NSD1. | ||||||||||||
| Genevestigator | Q96L73. | ||||||||||||
| GermOnline | ENSG00000165671. Homo sapiens. | ||||||||||||
Family and domain databases | |||||||||||||
| Gene3D | 3.30.40.10. 3 hits. | ||||||||||||
| InterPro | IPR006560. AWS. IPR003616. Post-SET_dom. IPR000313. PWWP. IPR001214. SET_dom. IPR019786. Zinc_finger_PHD-type_CS. IPR011011. Znf_FYVE_PHD. IPR001965. Znf_PHD. IPR019787. Znf_PHD-finger. IPR001841. Znf_RING. IPR013083. Znf_RING/FYVE/PHD. [Graphical view] | ||||||||||||
| Pfam | PF00628. PHD. 1 hit. PF00855. PWWP. 2 hits. PF00856. SET. 1 hit. [Graphical view] | ||||||||||||
| SMART | SM00570. AWS. 1 hit. SM00249. PHD. 5 hits. SM00508. PostSET. 1 hit. SM00293. PWWP. 2 hits. SM00184. RING. 1 hit. SM00317. SET. 1 hit. [Graphical view] | ||||||||||||
| SUPFAM | SSF57903. FYVE_PHD_ZnF. 3 hits. | ||||||||||||
| PROSITE | PS51215. AWS. 1 hit. PS50868. POST_SET. 1 hit. PS50812. PWWP. 2 hits. PS50280. SET. 1 hit. PS01359. ZF_PHD_1. 2 hits. PS50016. ZF_PHD_2. 2 hits. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other | |||||||||||||
| ChiTaRS | NSD1. human. | ||||||||||||
| GenomeRNAi | 64324. | ||||||||||||
| NextBio | 66241. | ||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | NSD1_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q96L73 Secondary accession number(s): Q96PD8, Q96RN7 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 5 Human chromosome 5: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
