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Protein

Cep170-like protein

Gene

CEP170P1

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Protein uncertaini

Functioni

GO - Molecular functioni

  • identical protein binding Source: IntAct
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Cep170-like protein
Alternative name(s):
CEP170 pseudogene 1
Gene namesi
Name:CEP170P1
Synonyms:CEP170L, KIAA0470L
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Unplaced

Organism-specific databases

HGNCiHGNC:28364. CEP170P1.

Pathology & Biotechi

Polymorphism and mutation databases

DMDMi74751998.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 293293Cep170-like proteinPRO_0000343425Add
BLAST

Proteomic databases

EPDiQ96L14.
MaxQBiQ96L14.
PRIDEiQ96L14.

Expressioni

Gene expression databases

CleanExiHS_CEP170L.

Organism-specific databases

HPAiHPA042151.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
itself3EBI-743488,EBI-743488
E2PSM93EBI-743488,EBI-10176929
AIMP2Q131555EBI-743488,EBI-745226
ARHGDIGQ998193EBI-743488,EBI-10295284
CCDC120Q96HB5-43EBI-743488,EBI-10185348
CCDC146Q8IYE0-23EBI-743488,EBI-10247802
CENPOQ9BU645EBI-743488,EBI-745954
CLHC1Q8NHS43EBI-743488,EBI-10203156
HAUS1Q96CS23EBI-743488,EBI-2514791
KIFC3Q9BVG84EBI-743488,EBI-2125614
LMO1P258003EBI-743488,EBI-8639312
LMO4P619683EBI-743488,EBI-2798728
OIP5O434823EBI-743488,EBI-536879
SMARCE1Q969G33EBI-743488,EBI-455078
SSC5DA1L4H13EBI-743488,EBI-10172867

GO - Molecular functioni

  • identical protein binding Source: IntAct

Protein-protein interaction databases

IntActiQ96L14. 93 interactions.
MINTiMINT-1439472.

Structurei

3D structure databases

ProteinModelPortaliQ96L14.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the CEP170 family.Curated

Phylogenomic databases

HOVERGENiHBG074863.
InParanoidiQ96L14.
PhylomeDBiQ96L14.

Family and domain databases

InterProiIPR026644. CEP170.
IPR029300. CEP170_C.
[Graphical view]
PANTHERiPTHR15715:SF17. PTHR15715:SF17. 1 hit.
PfamiPF15308. CEP170_C. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q96L14-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPTSSSFKHR IKEQEDYIRD WTAHREEIAR ISQDLALIAR EINDVAGEID
60 70 80 90 100
SVTSSGTAPS TTLVDRVFDE SLNFQKIPPL VHSKTPEGNN GRSGDPRPQA
110 120 130 140 150
AEPPDHLTIT RRRTWSRDEV MGDNLLLSSV FQFSKKIRQS IDKTAGKIRI
160 170 180 190 200
LFKDKDRNWD DIESKLRAES EVPIVKTSSM EISSILQELK RVEKQLQAIN
210 220 230 240 250
AMIDPDGTLE ALNNMGFPSA MLPSPPKQKS SPVNNHHSPG QTPTLGQPEA
260 270 280 290
RALHPAAVSA AAEFENAESE ADFSIHFNRV NPDGEEEDVT VHK
Length:293
Mass (Da):32,648
Last modified:March 1, 2004 - v2
Checksum:i74904E44B67399F3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC092670 Genomic DNA. No translation available.
BC014590 mRNA. No translation available.
UniGeneiHs.408293.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC092670 Genomic DNA. No translation available.
BC014590 mRNA. No translation available.
UniGeneiHs.408293.

3D structure databases

ProteinModelPortaliQ96L14.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ96L14. 93 interactions.
MINTiMINT-1439472.

Polymorphism and mutation databases

DMDMi74751998.

Proteomic databases

EPDiQ96L14.
MaxQBiQ96L14.
PRIDEiQ96L14.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

GeneCardsiCEP170P1.
HGNCiHGNC:28364. CEP170P1.
HPAiHPA042151.
neXtProtiNX_Q96L14.
GenAtlasiSearch...

Phylogenomic databases

HOVERGENiHBG074863.
InParanoidiQ96L14.
PhylomeDBiQ96L14.

Miscellaneous databases

PROiQ96L14.

Gene expression databases

CleanExiHS_CEP170L.

Family and domain databases

InterProiIPR026644. CEP170.
IPR029300. CEP170_C.
[Graphical view]
PANTHERiPTHR15715:SF17. PTHR15715:SF17. 1 hit.
PfamiPF15308. CEP170_C. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Generation and annotation of the DNA sequences of human chromosomes 2 and 4."
    Hillier L.W., Graves T.A., Fulton R.S., Fulton L.A., Pepin K.H., Minx P., Wagner-McPherson C., Layman D., Wylie K., Sekhon M., Becker M.C., Fewell G.A., Delehaunty K.D., Miner T.L., Nash W.E., Kremitzki C., Oddy L., Du H.
    , Sun H., Bradshaw-Cordum H., Ali J., Carter J., Cordes M., Harris A., Isak A., van Brunt A., Nguyen C., Du F., Courtney L., Kalicki J., Ozersky P., Abbott S., Armstrong J., Belter E.A., Caruso L., Cedroni M., Cotton M., Davidson T., Desai A., Elliott G., Erb T., Fronick C., Gaige T., Haakenson W., Haglund K., Holmes A., Harkins R., Kim K., Kruchowski S.S., Strong C.M., Grewal N., Goyea E., Hou S., Levy A., Martinka S., Mead K., McLellan M.D., Meyer R., Randall-Maher J., Tomlinson C., Dauphin-Kohlberg S., Kozlowicz-Reilly A., Shah N., Swearengen-Shahid S., Snider J., Strong J.T., Thompson J., Yoakum M., Leonard S., Pearman C., Trani L., Radionenko M., Waligorski J.E., Wang C., Rock S.M., Tin-Wollam A.-M., Maupin R., Latreille P., Wendl M.C., Yang S.-P., Pohl C., Wallis J.W., Spieth J., Bieri T.A., Berkowicz N., Nelson J.O., Osborne J., Ding L., Meyer R., Sabo A., Shotland Y., Sinha P., Wohldmann P.E., Cook L.L., Hickenbotham M.T., Eldred J., Williams D., Jones T.A., She X., Ciccarelli F.D., Izaurralde E., Taylor J., Schmutz J., Myers R.M., Cox D.R., Huang X., McPherson J.D., Mardis E.R., Clifton S.W., Warren W.C., Chinwalla A.T., Eddy S.R., Marra M.A., Ovcharenko I., Furey T.S., Miller W., Eichler E.E., Bork P., Suyama M., Torrents D., Waterston R.H., Wilson R.K.
    Nature 434:724-731(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Testis.

Entry informationi

Entry nameiC170L_HUMAN
AccessioniPrimary (citable) accession number: Q96L14
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: March 1, 2004
Last modified: May 11, 2016
This is version 87 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Caution

Could be the product of a pseudogene.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 4
    Human chromosome 4: entries, gene names and cross-references to MIM
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.