Q96J65 (MRP9_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 87.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Multidrug resistance-associated protein 9 Alternative name(s): ATP-binding cassette sub-family C member 12 | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 1359 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Probable transporter By similarity. |
| Subcellular location | Membrane; Multi-pass membrane protein Potential. |
| Tissue specificity | Expressed in testis (at protein level). Widely expressed at low level. Isoform 5 is specifically expressed in brain, testis and breast cancer cells. Ref.1 Ref.2 Ref.3 |
| Developmental stage | Expressed in fetal tissues. Ref.1 |
| Sequence similarities | Belongs to the ABC transporter superfamily. ABCC family. Conjugate transporter (TC 3.A.1.208) subfamily. [View classification] Contains 2 ABC transmembrane type-1 domains. Contains 2 ABC transporter domains. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Transport |
| Cellular component | Membrane |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Domain | Repeat Transmembrane Transmembrane helix |
| Ligand | ATP-binding Nucleotide-binding |
| PTM | Glycoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | ATP catabolic process Inferred from electronic annotation. Source: GOC |
| Cellular_component | integral to membrane Inferred from electronic annotation. Source: UniProtKB-KW mitochondrionInferred from electronic annotation. Source: Compara |
| Molecular_function | ATP binding Inferred from electronic annotation. Source: UniProtKB-KW ATPase activity, coupled to transmembrane movement of substancesInferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Alternative products
| This entry describes 5 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q96J65-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q96J65-2) Also known as: A; C; D; The sequence of this isoform differs from the canonical sequence as follows: 142-143: VI → TV 734-736: Missing. 1013-1359: Missing. | ||||||
| Note: May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay. | ||||||
| Isoform 3 (identifier: Q96J65-3) Also known as: B; The sequence of this isoform differs from the canonical sequence as follows: 142-143: VI → TV 734-736: Missing. 892-938: ILKSPMSFFD...NFLQQFFMVV → HFPQRSPGAQ...WQEGELHHLV 939-1359: Missing. | ||||||
| Note: May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay. | ||||||
| Isoform 4 (identifier: Q96J65-4) The sequence of this isoform differs from the canonical sequence as follows: 142-143: VI → TV 572-633: YQHTVRVCGL...YLLDDPLSAV → LGSGASTSLG...RRSGERQSSW 634-1359: Missing. | ||||||
| Note: No experimental confirmation available. May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay. | ||||||
| Isoform 5 (identifier: Q96J65-5) The sequence of this isoform differs from the canonical sequence as follows: 142-143: VI → TV 220-277: Missing. 737-760: Missing. 1013-1359: Missing. | ||||||
| Note: May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1359 | 1359 | Multidrug resistance-associated protein 9 | PRO_0000253578 | |||||
Regions | |||||||||
| Transmembrane | 125 – 145 | 21 | Helical; Potential | ||||||
| Transmembrane | 159 – 179 | 21 | Helical; Potential | ||||||
| Transmembrane | 231 – 251 | 21 | Helical; Potential | ||||||
| Transmembrane | 256 – 276 | 21 | Helical; Potential | ||||||
| Transmembrane | 348 – 368 | 21 | Helical; Potential | ||||||
| Transmembrane | 376 – 396 | 21 | Helical; Potential | ||||||
| Transmembrane | 791 – 811 | 21 | Helical; Potential | ||||||
| Transmembrane | 853 – 873 | 21 | Helical; Potential | ||||||
| Transmembrane | 934 – 954 | 21 | Helical; Potential | ||||||
| Transmembrane | 1031 – 1051 | 21 | Helical; Potential | ||||||
| Domain | 123 – 403 | 281 | ABC transmembrane type-1 1 | ||||||
| Domain | 467 – 701 | 235 | ABC transporter 1 | ||||||
| Domain | 795 – 1082 | 288 | ABC transmembrane type-1 2 | ||||||
| Domain | 1120 – 1354 | 235 | ABC transporter 2 | ||||||
| Nucleotide binding | 513 – 520 | 8 | ATP 1 Potential | ||||||
| Nucleotide binding | 1154 – 1161 | 8 | ATP 2 Potential | ||||||
Amino acid modifications | |||||||||
| Glycosylation | 405 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 438 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 540 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 981 | 1 | N-linked (GlcNAc...) Potential | ||||||
Natural variations | |||||||||
| Alternative sequence | 142 – 143 | 2 | VI → TV in isoform 2, isoform 3, isoform 4 and isoform 5. | VSP_021084 | |||||
| Alternative sequence | 220 – 277 | 58 | Missing in isoform 5. | VSP_021085 | |||||
| Alternative sequence | 572 – 633 | 62 | YQHTV…PLSAV → LGSGASTSLGGRGRGLAWPA LSTPTVSSTCWTTPCRPWTP TWGSTSLRSALRRRSGERQS SW in isoform 4. | VSP_021086 | |||||
| Alternative sequence | 634 – 1359 | 726 | Missing in isoform 4. | VSP_021087 | |||||
| Alternative sequence | 734 – 736 | 3 | Missing in isoform 2 and isoform 3. | VSP_021088 | |||||
| Alternative sequence | 737 – 760 | 24 | Missing in isoform 5. | VSP_021089 | |||||
| Alternative sequence | 892 – 938 | 47 | ILKSP…FFMVV → HFPQRSPGAQEGGECQPVTL VHPHHLLHAGPGHHSRLWQE GELHHLV in isoform 3. | VSP_021090 | |||||
| Alternative sequence | 939 – 1359 | 421 | Missing in isoform 3. | VSP_021091 | |||||
| Alternative sequence | 1013 – 1359 | 347 | Missing in isoform 2 and isoform 5. | VSP_021092 | |||||
| Natural variant | 9 | 1 | I → L. Corresponds to variant rs16945901 [ dbSNP | Ensembl ]. | VAR_028392 | |||||
| Natural variant | 102 | 1 | A → E. Corresponds to variant rs16945874 [ dbSNP | Ensembl ]. | VAR_028393 | |||||
| Natural variant | 587 | 1 | N → Y. Corresponds to variant rs16945816 [ dbSNP | Ensembl ]. | VAR_028394 | |||||
| Natural variant | 690 | 1 | E → V. Corresponds to variant rs34135219 [ dbSNP | Ensembl ]. | VAR_048139 | |||||
| Natural variant | 894 | 1 | K → M. Corresponds to variant rs8057474 [ dbSNP | Ensembl ]. | VAR_028395 | |||||
| Natural variant | 989 | 1 | T → S. Corresponds to variant rs6500305 [ dbSNP | Ensembl ]. | VAR_028396 | |||||
| Natural variant | 1013 | 1 | Y → H. Corresponds to variant rs6500304 [ dbSNP | Ensembl ]. | VAR_028397 | |||||
| Natural variant | 1117 | 1 | R → C. Ref.2 Corresponds to variant rs7193955 [ dbSNP | Ensembl ]. | VAR_028398 | |||||
| Natural variant | 1187 | 1 | I → T. Corresponds to variant rs34106426 [ dbSNP | Ensembl ]. | VAR_048140 | |||||
| Natural variant | 1191 | 1 | E → A. Corresponds to variant rs16945787 [ dbSNP | Ensembl ]. | VAR_028399 | |||||
| Natural variant | 1349 | 1 | F → L. Corresponds to variant rs12373105 [ dbSNP | Ensembl ]. | VAR_028400 | |||||
Experimental info | |||||||||
| Sequence conflict | 73 | 1 | T → A in BC036378. Ref.5 | ||||||
| Sequence conflict | 448 – 450 | 3 | SRK → RQE in AAL79528. Ref.1 | ||||||
| Sequence conflict | 448 – 450 | 3 | SRK → RQE in AAL79529. Ref.1 | ||||||
| Sequence conflict | 448 – 450 | 3 | SRK → RQE in AAL99900. Ref.1 | ||||||
| Sequence conflict | 448 – 450 | 3 | SRK → RQE in AAL99901. Ref.1 | ||||||
| Sequence conflict | 853 | 1 | W → R in AAL79528. Ref.1 | ||||||
| Sequence conflict | 853 | 1 | W → R in AAL79529. Ref.1 | ||||||
| Sequence conflict | 853 | 1 | W → R in AAL99900. Ref.1 | ||||||
| Sequence conflict | 853 | 1 | W → R in AAL99901. Ref.1 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Multiple splicing variants of two new human ATP-binding cassette transporters, ABCC11 and ABCC12." Yabuuchi H., Shimizu H., Takayanagi S., Ishikawa T. Biochem. Biophys. Res. Commun. 288:933-939(2001) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 2 AND 3), TISSUE SPECIFICITY, DEVELOPMENTAL STAGE. Tissue: Liver, Pancreas and Testis. |
| [2] | "Two new genes from the human ATP-binding cassette transporter superfamily, ABCC11 and ABCC12, tandemly duplicated on chromosome 16q12." Tammur J., Prades C., Arnould I., Rzhetsky A., Hutchinson A., Adachi M., Schuetz J.D., Swoboda K.J., Ptacek L.J., Rosier M., Dean M., Allikmets R. Gene 273:89-96(2001) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), VARIANT CYS-1117, TISSUE SPECIFICITY. Tissue: Testis. |
| [3] | "MRP9, an unusual truncated member of the ABC transporter superfamily, is highly expressed in breast cancer." Bera T.K., Iavarone C., Kumar V., Lee S., Lee B., Pastan I. Proc. Natl. Acad. Sci. U.S.A. 99:6997-7002(2002) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 5), TISSUE SPECIFICITY. |
| [4] | "The sequence and analysis of duplication-rich human chromosome 16." Martin J., Han C., Gordon L.A., Terry A., Prabhakar S., She X., Xie G., Hellsten U., Chan Y.M., Altherr M., Couronne O., Aerts A., Bajorek E., Black S., Blumer H., Branscomb E., Brown N.C., Bruno W.J. Pennacchio L.A.Nature 432:988-994(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 4). Tissue: Testis. |
Web resources
| ABCMdb Database for mutations in ABC proteins |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AF395908 mRNA. Translation: AAL79528.1. AF395909 mRNA. Translation: AAL79529.1. AF411577 mRNA. Translation: AAL99900.1. AF411578 mRNA. Translation: AAL99901.1. AY040220 mRNA. Translation: AAK76740.1. AY196326 mRNA. Translation: AAO40749.1. AC096996 Genomic DNA. No translation available. BC036378 mRNA. No translation available. |
| IPI | IPI00063878. IPI00291897. IPI00375288. IPI00646809. IPI00796878. |
| RefSeq | NP_150229.2. NM_033226.2. |
| UniGene | Hs.410111. |
3D structure databases | |
| HSSP | HSSP built from PDB template 2CBZ based on UniProtKB P33527. |
| ProteinModelPortal | Q96J65. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q96J65. 1 interaction. |
| STRING | 9606.ENSP00000311030. |
PTM databases | |
| PhosphoSite | Q96J65. |
Polymorphism databases | |
| DMDM | 161788999. |
Proteomic databases | |
| PaxDb | Q96J65. |
| PRIDE | Q96J65. |
Protocols and materials databases | |
| DNASU | 94160. |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000311303; ENSP00000311030; ENSG00000140798. ENST00000416054; ENSP00000413046; ENSG00000140798. ENST00000448542; ENSP00000401855; ENSG00000140798. ENST00000497206; ENSP00000431232; ENSG00000140798. ENST00000529084; ENSP00000434510; ENSG00000140798. ENST00000529504; ENSP00000433333; ENSG00000140798. ENST00000532494; ENSP00000437047; ENSG00000140798. ENST00000534418; ENSP00000431354; ENSG00000140798. |
| GeneID | 94160. |
| KEGG | hsa:94160. |
| UCSC | uc002efc.1. human. uc002efe.1. human. |
Organism-specific databases | |
| CTD | 94160. |
| GeneCards | GC16M048165. |
| H-InvDB | HIX0026945. |
| HGNC | HGNC:14640. ABCC12. |
| HPA | HPA043100. |
| MIM | 607041. gene. |
| neXtProt | NX_Q96J65. |
| PharmGKB | PA24394. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | COG1132. |
| HOVERGEN | HBG108314. |
| InParanoid | Q96J65. |
| KO | K05672. |
| OMA | EYISTCV. |
| OrthoDB | EOG4QFWCF. |
| PhylomeDB | Q96J65. |
Gene expression databases | |
| ArrayExpress | Q96J65. |
| Bgee | Q96J65. |
| CleanEx | HS_ABCC12. |
| Genevestigator | Q96J65. |
| GermOnline | ENSG00000140798. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR003593. AAA+_ATPase. IPR003439. ABC_transporter-like. IPR017871. ABC_transporter_CS. IPR017940. ABC_transporter_type1. IPR001140. ABC_transptr_TM_dom. IPR011527. ABC_transptrTM_dom_typ1. [Graphical view] |
| Pfam | PF00664. ABC_membrane. 2 hits. PF00005. ABC_tran. 2 hits. [Graphical view] |
| SMART | SM00382. AAA. 2 hits. [Graphical view] |
| SUPFAM | SSF90123. ABC_TM_1. 2 hits. |
| PROSITE | PS50929. ABC_TM1F. 2 hits. PS00211. ABC_TRANSPORTER_1. 2 hits. PS50893. ABC_TRANSPORTER_2. 2 hits. [Graphical view] |
| ProtoNet | Search... |
Other | |
| GenomeRNAi | 94160. |
| NextBio | 78453. |
| SOURCE | Search... |
Entry information
| Entry name | MRP9_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q96J65 Secondary accession number(s): Q49AL2, Q8TAF0, Q8TEY2 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 16 Human chromosome 16: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
