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Q96IH6 (Q96IH6_HUMAN) Unreviewed, UniProtKB/TrEMBL

Last modified March 6, 2013. Version 81. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
EMILIN1 protein EMBL AAH07530.1
OrganismHomo sapiens (Human) EMBL AAH07530.1
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo

Protein attributes

Sequence length347 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Contains 1 C1q domain. SAAS SAAS008160

Ontologies

Keywords
   Cellular componentSecreted SAAS SAAS008160
   DomainCollagen SAAS SAAS008160
Gene Ontology (GO)
   Cellular_componentcollagen

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q96IH6 [UniParc].

Last modified December 1, 2001. Version 1.
Checksum: 1AFAB73C44E6F09C

FASTA34735,928
        10         20         30         40         50         60 
MADLGATKDR IISEINRLQQ EATEHATESE ERFRGLEEGQ AQAGQCPSLE GRLGRLEGVC 

        70         80         90        100        110        120 
ERLDTVAGGL QGLREGLSRH VAGLWAGLRE TNTTSQMQAA LLEKLVGGQA GLGRRLGALN 

       130        140        150        160        170        180 
SSLQLLEDRL HQLSLKDLTG EGTKGPAGEA GPPGPPGLQG PPGPAGPPGS PGKDGQEGPI 

       190        200        210        220        230        240 
GPPGPQGEQG VEGAPAAPVP QVAFSAALSL PRSEPGTVPF DRVLLNDGGY YDPETGVFTA 

       250        260        270        280        290        300 
PLAGRYLLSA VLTGHRHEKV EAVLSRSNQG VARVDSGGYE PEGLENKPVA ESQPSPGTLG 

       310        320        330        340 
VFSLILPLQA GDTVCVDLVM GQLAHSEEPL TIFSGALLYG DPELEHA

« Hide

References

[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M. expand/collapse author list , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Brain EMBL AAH07530.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		BC007530 mRNA. Translation: AAH07530.1.
IPIIPI00893443.
UniGeneHs.63348.

3D structure databases

HSSPHSSP built from PDB template 1GR3 based on UniProtKB Q03692.
ProteinModelPortalQ96IH6.
SMRQ96IH6. Positions 158-196, 198-347.
ModBaseSearch...

Protein-protein interaction databases

IntActQ96IH6. 2 interactions.
STRINGQ96IH6.

Proteomic databases

PRIDEQ96IH6.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

UCSCuc002rik.4. human.

Phylogenomic databases

HOVERGENHBG074754.

Gene expression databases

ArrayExpressQ96IH6.

Family and domain databases

Gene3D2.60.120.40. 1 hit.
InterProIPR001073. C1q.
IPR008160. Collagen.
IPR008983. Tumour_necrosis_fac-like_dom.
[Graphical view]
PfamPF00386. C1q. 1 hit.
PF01391. Collagen. 1 hit.
[Graphical view]
SUPFAMSSF49842. TNF_like. 1 hit.
PROSITEPS50871. C1Q. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ96IH6_HUMAN
AccessionPrimary (citable) accession number: Q96IH6
Entry history
Integrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: December 1, 2001
Last modified: March 6, 2013
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.
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