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Q96GX2

- A7L3B_HUMAN

UniProt

Q96GX2 - A7L3B_HUMAN

Protein

Putative ataxin-7-like protein 3B

Gene

ATXN7L3B

Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 1 out of 5- Protein inferred from homologyi
  1. Names & Taxonomyi

    Protein namesi
    Recommended name:
    Putative ataxin-7-like protein 3B
    Gene namesi
    OrganismiHomo sapiens (Human)
    Taxonomic identifieri9606 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
    ProteomesiUP000005640: Chromosome 12

    Organism-specific databases

    HGNCiHGNC:37931. ATXN7L3B.

    Pathology & Biotechi

    Organism-specific databases

    PharmGKBiPA165512339.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 9797Putative ataxin-7-like protein 3BPRO_0000392529Add
    BLAST

    Proteomic databases

    MaxQBiQ96GX2.
    PRIDEiQ96GX2.

    PTM databases

    PhosphoSiteiQ96GX2.

    Expressioni

    Gene expression databases

    BgeeiQ96GX2.

    Interactioni

    Protein-protein interaction databases

    BioGridi139266. 2 interactions.
    IntActiQ96GX2. 1 interaction.

    Structurei

    3D structure databases

    ProteinModelPortaliQ96GX2.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the SGF11 family.Curated

    Phylogenomic databases

    OMAiEYFETIM.
    OrthoDBiEOG7BZVTK.
    PhylomeDBiQ96GX2.
    TreeFamiTF353123.

    Sequencei

    Sequence statusi: Complete.

    Q96GX2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MEEISLANLD TNKLEAIAQE IYVDLIEDSC LGFCFEVHRA VKCGYFYLEF   50
    AETGSVKDFG IQPVEDKGAC RLPLCSLPGE PGNGPDQQLQ RSPPEFQ 97
    Length:97
    Mass (Da):10,771
    Last modified:March 23, 2010 - v2
    Checksum:i722ADB410FCEFC9A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC025257 Genomic DNA. No translation available.
    BC009111 mRNA. Translation: AAH09111.1. Sequence problems.
    CCDSiCCDS53815.1.
    RefSeqiNP_001129734.1. NM_001136262.1.
    UniGeneiHs.744849.

    Genome annotation databases

    EnsembliENST00000519948; ENSP00000430000; ENSG00000253719.
    GeneIDi552889.
    KEGGihsa:552889.
    UCSCiuc001sxd.4. human.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC025257 Genomic DNA. No translation available.
    BC009111 mRNA. Translation: AAH09111.1 . Sequence problems.
    CCDSi CCDS53815.1.
    RefSeqi NP_001129734.1. NM_001136262.1.
    UniGenei Hs.744849.

    3D structure databases

    ProteinModelPortali Q96GX2.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 139266. 2 interactions.
    IntActi Q96GX2. 1 interaction.

    PTM databases

    PhosphoSitei Q96GX2.

    Proteomic databases

    MaxQBi Q96GX2.
    PRIDEi Q96GX2.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENST00000519948 ; ENSP00000430000 ; ENSG00000253719 .
    GeneIDi 552889.
    KEGGi hsa:552889.
    UCSCi uc001sxd.4. human.

    Organism-specific databases

    CTDi 552889.
    GeneCardsi GC12P074931.
    HGNCi HGNC:37931. ATXN7L3B.
    MIMi 615579. gene.
    neXtProti NX_Q96GX2.
    PharmGKBi PA165512339.
    GenAtlasi Search...

    Phylogenomic databases

    OMAi EYFETIM.
    OrthoDBi EOG7BZVTK.
    PhylomeDBi Q96GX2.
    TreeFami TF353123.

    Miscellaneous databases

    ChiTaRSi ATXN7L3B. human.
    GenomeRNAii 552889.
    NextBioi 112362.
    PROi Q96GX2.
    SOURCEi Search...

    Gene expression databases

    Bgeei Q96GX2.

    Family and domain databases

    ProtoNeti Search...

    Publicationsi

    1. "The finished DNA sequence of human chromosome 12."
      Scherer S.E., Muzny D.M., Buhay C.J., Chen R., Cree A., Ding Y., Dugan-Rocha S., Gill R., Gunaratne P., Harris R.A., Hawes A.C., Hernandez J., Hodgson A.V., Hume J., Jackson A., Khan Z.M., Kovar-Smith C., Lewis L.R.
      , Lozado R.J., Metzker M.L., Milosavljevic A., Miner G.R., Montgomery K.T., Morgan M.B., Nazareth L.V., Scott G., Sodergren E., Song X.-Z., Steffen D., Lovering R.C., Wheeler D.A., Worley K.C., Yuan Y., Zhang Z., Adams C.Q., Ansari-Lari M.A., Ayele M., Brown M.J., Chen G., Chen Z., Clerc-Blankenburg K.P., Davis C., Delgado O., Dinh H.H., Draper H., Gonzalez-Garay M.L., Havlak P., Jackson L.R., Jacob L.S., Kelly S.H., Li L., Li Z., Liu J., Liu W., Lu J., Maheshwari M., Nguyen B.-V., Okwuonu G.O., Pasternak S., Perez L.M., Plopper F.J.H., Santibanez J., Shen H., Tabor P.E., Verduzco D., Waldron L., Wang Q., Williams G.A., Zhang J., Zhou J., Allen C.C., Amin A.G., Anyalebechi V., Bailey M., Barbaria J.A., Bimage K.E., Bryant N.P., Burch P.E., Burkett C.E., Burrell K.L., Calderon E., Cardenas V., Carter K., Casias K., Cavazos I., Cavazos S.R., Ceasar H., Chacko J., Chan S.N., Chavez D., Christopoulos C., Chu J., Cockrell R., Cox C.D., Dang M., Dathorne S.R., David R., Davis C.M., Davy-Carroll L., Deshazo D.R., Donlin J.E., D'Souza L., Eaves K.A., Egan A., Emery-Cohen A.J., Escotto M., Flagg N., Forbes L.D., Gabisi A.M., Garza M., Hamilton C., Henderson N., Hernandez O., Hines S., Hogues M.E., Huang M., Idlebird D.G., Johnson R., Jolivet A., Jones S., Kagan R., King L.M., Leal B., Lebow H., Lee S., LeVan J.M., Lewis L.C., London P., Lorensuhewa L.M., Loulseged H., Lovett D.A., Lucier A., Lucier R.L., Ma J., Madu R.C., Mapua P., Martindale A.D., Martinez E., Massey E., Mawhiney S., Meador M.G., Mendez S., Mercado C., Mercado I.C., Merritt C.E., Miner Z.L., Minja E., Mitchell T., Mohabbat F., Mohabbat K., Montgomery B., Moore N., Morris S., Munidasa M., Ngo R.N., Nguyen N.B., Nickerson E., Nwaokelemeh O.O., Nwokenkwo S., Obregon M., Oguh M., Oragunye N., Oviedo R.J., Parish B.J., Parker D.N., Parrish J., Parks K.L., Paul H.A., Payton B.A., Perez A., Perrin W., Pickens A., Primus E.L., Pu L.-L., Puazo M., Quiles M.M., Quiroz J.B., Rabata D., Reeves K., Ruiz S.J., Shao H., Sisson I., Sonaike T., Sorelle R.P., Sutton A.E., Svatek A.F., Svetz L.A., Tamerisa K.S., Taylor T.R., Teague B., Thomas N., Thorn R.D., Trejos Z.Y., Trevino B.K., Ukegbu O.N., Urban J.B., Vasquez L.I., Vera V.A., Villasana D.M., Wang L., Ward-Moore S., Warren J.T., Wei X., White F., Williamson A.L., Wleczyk R., Wooden H.S., Wooden S.H., Yen J., Yoon L., Yoon V., Zorrilla S.E., Nelson D., Kucherlapati R., Weinstock G., Gibbs R.A.
      Nature 440:346-351(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: Cervix.
    3. "Genome-wide survey for biologically functional pseudogenes."
      Svensson O., Arvestad L., Lagergren J.
      PLoS Comput. Biol. 2:E46-E46(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: IDENTIFICATION.

    Entry informationi

    Entry nameiA7L3B_HUMAN
    AccessioniPrimary (citable) accession number: Q96GX2
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: March 23, 2010
    Last sequence update: March 23, 2010
    Last modified: October 1, 2014
    This is version 62 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program
    DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

    Miscellaneousi

    Miscellaneous

    Encoded by an expressed retrotransposed copy of the ATXN7L3 locus that emerged prior to the speciation event separating primates and rodents.

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Human chromosome 12
      Human chromosome 12: entries, gene names and cross-references to MIM
    2. MIM cross-references
      Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3