Q96G01 (BICD1_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 94.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Protein bicaudal D homolog 1 Short name=Bic-D 1 | ||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||
| Taxonomic identifier | 9606 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 975 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Regulates coat complex coatomer protein I (COPI)-independent Golgi-endoplasmic reticulum transport by recruiting the dynein-dynactin motor complex. |
| Subunit structure | Interacts with RAB6A. Interacts (via C-terminus) with RAB6B (GTP-bound); the interaction is direct. Interacts with CLIP-115 and KIFC2 By similarity. Interacts with human cytomegalovirus/HHV-5 protein UL32. Ref.7 Ref.8 |
| Subcellular location | |
| Tissue specificity | Expressed in the brain, heart and skeletal muscle. |
| Post-translational modification | Isoform 3 is phosphorylated on Ser-865 and Thr-866. |
| Sequence similarities | Belongs to the BicD family. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| STAT3 | P40763 | 2 | EBI-1104509,EBI-518675 |
Alternative products
| This entry describes 4 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q96G01-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q96G01-2) The sequence of this isoform differs from the canonical sequence as follows: 72-93: AFGQSFSIHRKVAEDGETREET → VSCLSPLPFLALTPPTRKAHSS 94-975: Missing. | ||||||
| Note: Due to intron retention. No experimental confirmation available. | ||||||
| Isoform 3 (identifier: Q96G01-3) The sequence of this isoform differs from the canonical sequence as follows: 858-873: QFSPSLCDQSRPRTSG → YACSDLHSTVQWPDFS 874-975: Missing. | ||||||
| Note: Due to intron retention. | ||||||
| Isoform 4 (identifier: Q96G01-4) The sequence of this isoform differs from the canonical sequence as follows: 821-835: VSGEASVTVPTIDTY → IVSSLLPPYRHSAHN 836-975: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 975 | 975 | Protein bicaudal D homolog 1 | PRO_0000205357 | |||||
Regions | |||||||||
| Region | 663 – 803 | 141 | Interacts with RAB6A | ||||||
| Coiled coil | 1 – 265 | 265 | Potential | ||||||
| Coiled coil | 319 – 496 | 178 | Potential | ||||||
| Coiled coil | 663 – 803 | 141 | Potential | ||||||
Natural variations | |||||||||
| Alternative sequence | 72 – 93 | 22 | AFGQS…TREET → VSCLSPLPFLALTPPTRKAH SS in isoform 2. | VSP_007961 | |||||
| Alternative sequence | 94 – 975 | 882 | Missing in isoform 2. | VSP_007962 | |||||
| Alternative sequence | 821 – 835 | 15 | VSGEA…TIDTY → IVSSLLPPYRHSAHN in isoform 4. | VSP_045637 | |||||
| Alternative sequence | 836 – 975 | 140 | Missing in isoform 4. | VSP_045638 | |||||
| Alternative sequence | 858 – 873 | 16 | QFSPS…PRTSG → YACSDLHSTVQWPDFS in isoform 3. | VSP_007963 | |||||
| Alternative sequence | 874 – 975 | 102 | Missing in isoform 3. | VSP_007964 | |||||
| Natural variant | 778 | 1 | T → A. Ref.2 Corresponds to variant rs200845476 [ dbSNP | Ensembl ]. | VAR_069060 | |||||
Experimental info | |||||||||
| Sequence conflict | 588 | 1 | A → P in AAB94805. Ref.1 | ||||||
| Sequence conflict | 746 | 1 | A → T in AAB94805. Ref.1 | ||||||
| Sequence conflict | 796 | 1 | D → G in AAB94806. Ref.1 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "A human homologue (BICD1) of the Drosophila bicaudal-D gene." Baens M., Marynen P. Genomics 45:601-606(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), NUCLEOTIDE SEQUENCE [MRNA] OF 702-975 (ISOFORM 3). |
| [2] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 4), VARIANT ALA-778. Tissue: Cerebellum and Thalamus. |
| [3] | "The finished DNA sequence of human chromosome 12." Scherer S.E., Muzny D.M., Buhay C.J., Chen R., Cree A., Ding Y., Dugan-Rocha S., Gill R., Gunaratne P., Harris R.A., Hawes A.C., Hernandez J., Hodgson A.V., Hume J., Jackson A., Khan Z.M., Kovar-Smith C., Lewis L.R. Gibbs R.A.Nature 440:346-351(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [4] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). Tissue: Skin. |
| [6] | "Bicaudal-D regulates COPI-independent Golgi-ER transport by recruiting the dynein-dynactin motor complex." Matanis T., Akhmanova A., Wulf P., Del Nery E., Weide T., Stepanova T., Galjart N., Grosveld F., Goud B., De Zeeuw C.I., Barnekow A., Hoogenraad C.C. Nat. Cell Biol. 4:986-992(2002) [PubMed] [Europe PMC] [Abstract] Cited for: CHARACTERIZATION. |
| [7] | "A role for the Rab6B Bicaudal-D1 interaction in retrograde transport in neuronal cells." Wanschers B.F.J.F., van de Vorstenbosch R., Schlager M.A., Splinter D., Akhmanova A., Hoogenraad C.C., Wieringa B., Fransen J.A. Exp. Cell Res. 313:3408-3420(2007) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH RAB6B. |
| [8] | "Bicaudal D1-dependent trafficking of human cytomegalovirus tegument protein pp150 in virus-infected cells." Indran S.V., Ballestas M.E., Britt W.J. J. Virol. 84:3162-3177(2010) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH HHV-5 PROTEIN UL32. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | U90028 mRNA. Translation: AAB94805.1. U90030 mRNA. Translation: AAB94806.1. AK290188 mRNA. Translation: BAF82877.1. AK313430 mRNA. No translation available. AC016954 Genomic DNA. No translation available. AC026356 Genomic DNA. No translation available. AC048344 Genomic DNA. No translation available. AC087245 Genomic DNA. No translation available. AC087316 Genomic DNA. No translation available. CH471116 Genomic DNA. Translation: EAW88534.1. BC010091 mRNA. No translation available. |
| IPI | IPI00018368. IPI00062115. IPI00337563. IPI00794021. |
| RefSeq | NP_001003398.1. NM_001003398.1. NP_001705.2. NM_001714.2. |
| UniGene | Hs.505202. |
3D structure databases | |
| ProteinModelPortal | Q96G01. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q96G01. 5 interactions. |
| MINT | MINT-206187. |
| STRING | 9606.ENSP00000281474. |
PTM databases | |
| PhosphoSite | Q96G01. |
Polymorphism databases | |
| DMDM | 209572759. |
Proteomic databases | |
| PaxDb | Q96G01. |
| PRIDE | Q96G01. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000281474; ENSP00000281474; ENSG00000151746. ENST00000548411; ENSP00000446793; ENSG00000151746. ENST00000551848; ENSP00000448933; ENSG00000151746. |
| GeneID | 636. |
| KEGG | hsa:636. |
| UCSC | uc001rku.3. human. |
Organism-specific databases | |
| CTD | 636. |
| GeneCards | GC12P032259. |
| H-InvDB | HIX0010532. |
| HGNC | HGNC:1049. BICD1. |
| HPA | HPA041309. |
| MIM | 602204. gene. |
| neXtProt | NX_Q96G01. |
| PharmGKB | PA25352. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG291306. |
| HOGENOM | HOG000261658. |
| HOVERGEN | HBG050686. |
| InParanoid | Q96G01. |
| OMA | QIKHLQR. |
| PhylomeDB | Q96G01. |
Gene expression databases | |
| ArrayExpress | Q96G01. |
| Bgee | Q96G01. |
| CleanEx | HS_BICD1. |
| Genevestigator | Q96G01. |
| GermOnline | ENSG00000151746. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR018477. Bicaudal-D_microtubule-assoc. [Graphical view] |
| PANTHER | PTHR31233. PTHR31233. 1 hit. |
| Pfam | PF09730. BicD. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChiTaRS | BICD1. human. |
| GenomeRNAi | 636. |
| NextBio | 2572. |
| SOURCE | Search... |
Entry information
| Entry name | BICD1_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q96G01 Secondary accession number(s): A8K2C3 O43893 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 12 Human chromosome 12: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
