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Protein

Putative uncharacterized protein encoded by LINC00526

Gene

LINC00526

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein uncertaini

Names & Taxonomyi

Protein namesi
Recommended name:
Putative uncharacterized protein encoded by LINC00526
Gene namesi
Name:LINC00526
Synonyms:C18orf18
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Unplaced

Organism-specific databases

HGNCiHGNC:28278. LINC00526.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 9595Putative uncharacterized protein encoded by LINC00526PRO_0000079310Add
BLAST

Proteomic databases

PRIDEiQ96FQ7.

PTM databases

PhosphoSiteiQ96FQ7.

Expressioni

Gene expression databases

CleanExiHS_C18orf18.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
AESQ081173EBI-10286106,EBI-717810
CCDC57Q2TAC23EBI-10286106,EBI-2808286
KRT31Q153233EBI-10286106,EBI-948001
NOTCH2NLQ7Z3S93EBI-10286106,EBI-945833
TRIM23P364063EBI-10286106,EBI-740098
TRIM27P143733EBI-10286106,EBI-719493
USHBP1Q8N6Y03EBI-10286106,EBI-739895

Protein-protein interaction databases

IntActiQ96FQ7. 7 interactions.

Structurei

3D structure databases

ProteinModelPortaliQ96FQ7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

InParanoidiQ96FQ7.
PhylomeDBiQ96FQ7.

Sequencei

Sequence statusi: Complete.

Q96FQ7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSHSYKKAIS DEALRPFQMD YFGGLPPGQY ATRMTGQVHG SGCHLRSAPC
60 70 80 90
DLGASQRKLS SNFSEIDAGL FSQGKSAAYT DIGATKPVEQ RETAS
Length:95
Mass (Da):10,201
Last modified:December 1, 2001 - v1
Checksum:i2AAC97F270A37B97
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti16 – 161P → A.
Corresponds to variant rs7242964 [ dbSNP | Ensembl ].
VAR_050902

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK292743 mRNA. Translation: BAF85432.1.
AP001496 Genomic DNA. No translation available.
CH471113 Genomic DNA. Translation: EAX01649.1.
BC010538 mRNA. No translation available.
UniGeneiHs.657197.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK292743 mRNA. Translation: BAF85432.1.
AP001496 Genomic DNA. No translation available.
CH471113 Genomic DNA. Translation: EAX01649.1.
BC010538 mRNA. No translation available.
UniGeneiHs.657197.

3D structure databases

ProteinModelPortaliQ96FQ7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ96FQ7. 7 interactions.

PTM databases

PhosphoSiteiQ96FQ7.

Proteomic databases

PRIDEiQ96FQ7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

GeneCardsiLINC00526.
HGNCiHGNC:28278. LINC00526.
neXtProtiNX_Q96FQ7.
GenAtlasiSearch...

Phylogenomic databases

InParanoidiQ96FQ7.
PhylomeDBiQ96FQ7.

Gene expression databases

CleanExiHS_C18orf18.

Family and domain databases

ProtoNetiSearch...

Publicationsi

  1. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Liver.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  4. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Cervix.

Entry informationi

Entry nameiCR018_HUMAN
AccessioniPrimary (citable) accession number: Q96FQ7
Secondary accession number(s): A8K9M8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 5, 2005
Last sequence update: December 1, 2001
Last modified: November 11, 2015
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Caution

Product of a dubious gene prediction.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 18
    Human chromosome 18: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.