Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

ZBED6 C-terminal-like protein

Gene

ZBED6CL

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
ZBED6 C-terminal-like protein
Gene namesi
Name:ZBED6CL
Synonyms:C7orf29
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 7

Organism-specific databases

HGNCiHGNC:21720. ZBED6CL.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA134942566.

Polymorphism and mutation databases

BioMutaiZBED6CL.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 236236ZBED6 C-terminal-like proteinPRO_0000089586Add
BLAST

Proteomic databases

PaxDbiQ96FA7.
PeptideAtlasiQ96FA7.
PRIDEiQ96FA7.

PTM databases

iPTMnetiQ96FA7.
PhosphoSiteiQ96FA7.

Expressioni

Gene expression databases

BgeeiQ96FA7.
CleanExiHS_C7orf29.
ExpressionAtlasiQ96FA7. baseline and differential.
GenevisibleiQ96FA7. HS.

Organism-specific databases

HPAiHPA019724.
HPA055805.

Interactioni

Protein-protein interaction databases

BioGridi125259. 1 interaction.
IntActiQ96FA7. 1 interaction.
STRINGi9606.ENSP00000343242.

Structurei

3D structure databases

ProteinModelPortaliQ96FA7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG410JB12. Eukaryota.
ENOG41119N3. LUCA.
GeneTreeiENSGT00510000050353.
HOGENOMiHOG000111588.
InParanoidiQ96FA7.
OMAiWPPSICL.
OrthoDBiEOG74R1QQ.
PhylomeDBiQ96FA7.

Sequencei

Sequence statusi: Complete.

Q96FA7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVVREASAAQ ASLSQVLPQL RYLHIFLEQV HTHFQEQSVG ERGAAIQLAE
60 70 80 90 100
GLARQLCTDC QLNKLFYREE FVLATLLDPC FKGKIEAILP WGPTDIDHWK
110 120 130 140 150
QVLVYKVKEI RVSEYSLNSP SPLQSPRGLC VDPTRVAKSS GVEGRSQGEP
160 170 180 190 200
LQSSSHSGAF LLAQREKGLL ESMGLLASER SGGSLSTKSH WASIIVKKYL
210 220 230
WENETVGAQD DPLAYWEKKR EAWPPSICLT PHRSLL
Length:236
Mass (Da):26,352
Last modified:December 1, 2001 - v1
Checksum:i76769A693BC30AA4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005586 Genomic DNA. Translation: AAP21891.1.
BC011406 mRNA. Translation: AAH11406.1.
CCDSiCCDS5900.1.
RefSeqiNP_612443.1. NM_138434.2.
UniGeneiHs.655915.

Genome annotation databases

EnsembliENST00000343855; ENSP00000343242; ENSG00000188707.
GeneIDi113763.
KEGGihsa:113763.
UCSCiuc003wgy.5. human.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005586 Genomic DNA. Translation: AAP21891.1.
BC011406 mRNA. Translation: AAH11406.1.
CCDSiCCDS5900.1.
RefSeqiNP_612443.1. NM_138434.2.
UniGeneiHs.655915.

3D structure databases

ProteinModelPortaliQ96FA7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi125259. 1 interaction.
IntActiQ96FA7. 1 interaction.
STRINGi9606.ENSP00000343242.

PTM databases

iPTMnetiQ96FA7.
PhosphoSiteiQ96FA7.

Polymorphism and mutation databases

BioMutaiZBED6CL.

Proteomic databases

PaxDbiQ96FA7.
PeptideAtlasiQ96FA7.
PRIDEiQ96FA7.

Protocols and materials databases

DNASUi113763.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000343855; ENSP00000343242; ENSG00000188707.
GeneIDi113763.
KEGGihsa:113763.
UCSCiuc003wgy.5. human.

Organism-specific databases

CTDi113763.
GeneCardsiZBED6CL.
HGNCiHGNC:21720. ZBED6CL.
HPAiHPA019724.
HPA055805.
MIMi615252. gene.
neXtProtiNX_Q96FA7.
PharmGKBiPA134942566.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiENOG410JB12. Eukaryota.
ENOG41119N3. LUCA.
GeneTreeiENSGT00510000050353.
HOGENOMiHOG000111588.
InParanoidiQ96FA7.
OMAiWPPSICL.
OrthoDBiEOG74R1QQ.
PhylomeDBiQ96FA7.

Miscellaneous databases

GenomeRNAii113763.
PROiQ96FA7.
SOURCEiSearch...

Gene expression databases

BgeeiQ96FA7.
CleanExiHS_C7orf29.
ExpressionAtlasiQ96FA7. baseline and differential.
GenevisibleiQ96FA7. HS.

Family and domain databases

ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The DNA sequence of human chromosome 7."
    Hillier L.W., Fulton R.S., Fulton L.A., Graves T.A., Pepin K.H., Wagner-McPherson C., Layman D., Maas J., Jaeger S., Walker R., Wylie K., Sekhon M., Becker M.C., O'Laughlin M.D., Schaller M.E., Fewell G.A., Delehaunty K.D., Miner T.L.
    , Nash W.E., Cordes M., Du H., Sun H., Edwards J., Bradshaw-Cordum H., Ali J., Andrews S., Isak A., Vanbrunt A., Nguyen C., Du F., Lamar B., Courtney L., Kalicki J., Ozersky P., Bielicki L., Scott K., Holmes A., Harkins R., Harris A., Strong C.M., Hou S., Tomlinson C., Dauphin-Kohlberg S., Kozlowicz-Reilly A., Leonard S., Rohlfing T., Rock S.M., Tin-Wollam A.-M., Abbott A., Minx P., Maupin R., Strowmatt C., Latreille P., Miller N., Johnson D., Murray J., Woessner J.P., Wendl M.C., Yang S.-P., Schultz B.R., Wallis J.W., Spieth J., Bieri T.A., Nelson J.O., Berkowicz N., Wohldmann P.E., Cook L.L., Hickenbotham M.T., Eldred J., Williams D., Bedell J.A., Mardis E.R., Clifton S.W., Chissoe S.L., Marra M.A., Raymond C., Haugen E., Gillett W., Zhou Y., James R., Phelps K., Iadanoto S., Bubb K., Simms E., Levy R., Clendenning J., Kaul R., Kent W.J., Furey T.S., Baertsch R.A., Brent M.R., Keibler E., Flicek P., Bork P., Suyama M., Bailey J.A., Portnoy M.E., Torrents D., Chinwalla A.T., Gish W.R., Eddy S.R., McPherson J.D., Olson M.V., Eichler E.E., Green E.D., Waterston R.H., Wilson R.K.
    Nature 424:157-164(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Colon.
  3. "ZBED evolution: repeated utilization of DNA transposons as regulators of diverse host functions."
    Hayward A., Ghazal A., Andersson G., Andersson L., Jern P.
    PLoS ONE 8:E59940-E59940(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHYLOGENY, GENE NOMENCLATURE.

Entry informationi

Entry nameiZB6CL_HUMAN
AccessioniPrimary (citable) accession number: Q96FA7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 24, 2004
Last sequence update: December 1, 2001
Last modified: July 6, 2016
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Miscellaneous

Similar to the C-terminus of ZBED6, but lacks BED domains, and therefore is probably not involved in transcriptional regulation. Encoded by a DNA transposon located in the 5'-untranslated region (5'-UTR) of LLRC61.

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 7
    Human chromosome 7: entries, gene names and cross-references to MIM
  2. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.