Q96EY1 (DNJA3_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
April 18, 2012.
Version 108.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: DnaJ homolog subfamily A member 3, mitochondrial Alternative name(s): DnaJ protein Tid-1 Short name=hTid-1 Hepatocellular carcinoma-associated antigen 57 Tumorous imaginal discs protein Tid56 homolog | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 480 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Modulates apoptotic signal transduction or effector structures within the mitochondrial matrix. Affect cytochrome C release from the mitochondria and caspase 3 activation, but not caspase 8 activation. Isoform 1 increases apoptosis triggered by both TNF and the DNA-damaging agent mytomycin C; in sharp contrast, isoform 2 suppresses apoptosis. Can modulate IFN-gamma-mediated transcriptional activity. Isoform 2 may play a role in neuromuscular junction development as an effector of the MUSK signaling pathway. |
| Subunit structure | Interacts with JAK2, HSPA9B and IFN-gammaR2 chain. Interacts with Ras GTPase-activating protein 1 (RASA1). Isoform 2 interacts with MUSK (via the cytoplasmic domain) By similarity. Ref.2 |
| Subcellular location | Mitochondrion matrix. Cytoplasm › cytosol By similarity. Cell junction › synapse › postsynaptic cell membrane; Peripheral membrane protein By similarity. Note: Recruited to the postsynaptic cell membrane of the neuromuscular junction through interaction with MUSK By similarity. |
| Tissue specificity | Widely expressed with highest levels in heart, liver, lung and skeletal muscles. Also expressed in keratinocytes. Ref.1 |
| Domain | Modulation of apoptosis, i.e proapoptotic activity of isoform 1 and antiapoptotic activity of isoform 2, is J domain-dependent. |
| Post-translational modification | Tyrosine phosphorylated By similarity. Ref.8 Phosphorylated upon DNA damage, probably by ATM or ATR. Ref.8 |
| Sequence similarities | Contains 1 CR-type zinc finger. Contains 1 J domain. |
| Sequence caution | The sequence AAF66245.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. The sequence AAF66245.1 differs from that shown. Reason: Frameshift at positions 408 and 411. The sequence AAH12343.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| MET | P08581 | 2 | EBI-3952284,EBI-1039152 | |
| STAT5B | P51692 | 2 | EBI-356767,EBI-1186119 | |
| Stat5b | P42232 | 2 | EBI-3952284,EBI-617454 | From a different organism. |
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q96EY1-1) Also known as: Tid-1(L); This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q96EY1-2) Also known as: Tid-1(S); The sequence of this isoform differs from the canonical sequence as follows: 448-453: GSTMDS → KRSTGN 454-480: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||||||||||||||||||||||||||
Molecule processing | |||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Transit peptide | 1 – ? | Mitochondrion Potential | |||||||||||||||||||||||||||||||||
| Chain | ? – 480 | DnaJ homolog subfamily A member 3, mitochondrial | PRO_0000007256 | ||||||||||||||||||||||||||||||||
Regions | |||||||||||||||||||||||||||||||||||
| Domain | 93 – 158 | 66 | J | ||||||||||||||||||||||||||||||||
| Repeat | 236 – 243 | 8 | CXXCXGXG motif | ||||||||||||||||||||||||||||||||
| Repeat | 253 – 260 | 8 | CXXCXGXG motif | ||||||||||||||||||||||||||||||||
| Repeat | 275 – 282 | 8 | CXXCXGXG motif | ||||||||||||||||||||||||||||||||
| Repeat | 289 – 296 | 8 | CXXCXGXG motif | ||||||||||||||||||||||||||||||||
| Zinc finger | 223 – 301 | 79 | CR-type | ||||||||||||||||||||||||||||||||
Sites | |||||||||||||||||||||||||||||||||||
| Metal binding | 236 | 1 | Zinc 1 By similarity | ||||||||||||||||||||||||||||||||
| Metal binding | 239 | 1 | Zinc 1 By similarity | ||||||||||||||||||||||||||||||||
| Metal binding | 253 | 1 | Zinc 2 By similarity | ||||||||||||||||||||||||||||||||
| Metal binding | 256 | 1 | Zinc 2 By similarity | ||||||||||||||||||||||||||||||||
| Metal binding | 275 | 1 | Zinc 2 By similarity | ||||||||||||||||||||||||||||||||
| Metal binding | 278 | 1 | Zinc 2 By similarity | ||||||||||||||||||||||||||||||||
| Metal binding | 289 | 1 | Zinc 1 By similarity | ||||||||||||||||||||||||||||||||
| Metal binding | 292 | 1 | Zinc 1 By similarity | ||||||||||||||||||||||||||||||||
Amino acid modifications | |||||||||||||||||||||||||||||||||||
| Modified residue | 169 | 1 | Phosphoserine Ref.8 | ||||||||||||||||||||||||||||||||
Natural variations | |||||||||||||||||||||||||||||||||||
| Alternative sequence | 448 – 453 | 6 | GSTMDS → KRSTGN in isoform 2. | VSP_007425 | |||||||||||||||||||||||||||||||
| Alternative sequence | 454 – 480 | 27 | Missing in isoform 2. | VSP_007426 | |||||||||||||||||||||||||||||||
| Natural variant | 75 | 1 | N → Y. Ref.2 Ref.3 Ref.5 Ref.6 Corresponds to variant rs4785963 [ dbSNP | Ensembl ]. | VAR_027965 | |||||||||||||||||||||||||||||||
Experimental info | |||||||||||||||||||||||||||||||||||
| Mutagenesis | 121 | 1 | H → Q: Loss of modulation of apoptosis. Ref.7 | ||||||||||||||||||||||||||||||||
| Sequence conflict | 320 | 1 | M → W in AAF66245. Ref.6 | ||||||||||||||||||||||||||||||||
Secondary structure | |||||||||||||||||||||||||||||||||||
Helix Strand Turn | |||||||||||||||||||||||||||||||||||
| Helix | 94 – 98 | 5 | |||||||||||||||||||||||||||||||||
| Helix | 106 – 119 | 14 | |||||||||||||||||||||||||||||||||
| Turn | 122 – 124 | 3 | |||||||||||||||||||||||||||||||||
| Helix | 131 – 146 | 16 | |||||||||||||||||||||||||||||||||
| Helix | 148 – 156 | 9 | |||||||||||||||||||||||||||||||||
| Beta strand | 222 – 224 | 3 | |||||||||||||||||||||||||||||||||
| Beta strand | 237 – 244 | 8 | |||||||||||||||||||||||||||||||||
| Beta strand | 254 – 259 | 6 | |||||||||||||||||||||||||||||||||
| Beta strand | 261 – 266 | 6 | |||||||||||||||||||||||||||||||||
| Beta strand | 269 – 274 | 6 | |||||||||||||||||||||||||||||||||
| Beta strand | 276 – 284 | 9 | |||||||||||||||||||||||||||||||||
| Beta strand | 290 – 294 | 5 | |||||||||||||||||||||||||||||||||
| Beta strand | 296 – 298 | 3 | |||||||||||||||||||||||||||||||||
Sequences
| ||||||||||||||||||||||||
References
| « Hide 'large scale' references | |
| [1] | "A novel human DnaJ protein, hTid-1, a homolog of the Drosophila tumor suppressor protein Tid56, can interact with the human papillomavirus type 16 E7 oncoprotein." Schilling B., De-Medina T., Syken J., Vidal M., Munger K. Virology 247:74-85(1998) [PubMed: 9683573] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), TISSUE SPECIFICITY. |
| [2] | "hTid-1, a human DnaJ protein, modulates the interferon signaling pathway." Sarkar S., Pollack B.P., Lin K.-T., Kotenko S.V., Cook J.R., Lewis A., Pestka S. J. Biol. Chem. 276:49034-49042(2001) [PubMed: 11679576] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), INTERACTION WITH JAK2; HSP70 AND IFN-GAMMAR2, VARIANT TYR-75. |
| [3] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed: 14702039] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), VARIANT TYR-75. Tissue: Urinary bladder. |
| [4] | "The sequence and analysis of duplication-rich human chromosome 16." Martin J., Han C., Gordon L.A., Terry A., Prabhakar S., She X., Xie G., Hellsten U., Chan Y.M., Altherr M., Couronne O., Aerts A., Bajorek E., Black S., Blumer H., Branscomb E., Brown N.C., Bruno W.J. Pennacchio L.A.Nature 432:988-994(2004) [PubMed: 15616553] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2), VARIANT TYR-75. Tissue: Brain, Colon, Lung, Muscle and Placenta. |
| [6] | "Large scale identification of human hepatocellular carcinoma-associated antigens by autoantibodies." Wang Y., Han K.-J., Pang X.-W., Vaughan H.A., Qu W., Dong X.-Y., Peng J.-R., Zhao H.-T., Rui J.-A., Leng X.-S., Cebon J., Burgess A.W., Chen W.-F. J. Immunol. 169:1102-1109(2002) [PubMed: 12097419] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 3-480 (ISOFORM 2), VARIANT TYR-75. Tissue: Hepatoma. |
| [7] | "TID1, a human homolog of the Drosophila tumor suppressor l(2)tid, encodes two mitochondrial modulators of apoptosis with opposing functions." Syken J., De-Medina T., Muenger K. Proc. Natl. Acad. Sci. U.S.A. 96:8499-8504(1999) [PubMed: 10411904] [Abstract] Cited for: CHARACTERIZATION, MUTAGENESIS OF HIS-121. |
| [8] | "ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage." Matsuoka S., Ballif B.A., Smogorzewska A., McDonald E.R. III, Hurov K.E., Luo J., Bakalarski C.E., Zhao Z., Solimini N., Lerenthal Y., Shiloh Y., Gygi S.P., Elledge S.J. Science 316:1160-1166(2007) [PubMed: 17525332] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-169, MASS SPECTROMETRY. Tissue: Embryonic kidney. |
| [9] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed: 21269460] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [10] | "Solution structure of J-domain and of zinc finger domain from human DnaJ subfamily A member 3." RIKEN structural genomics initiative (RSGI) Submitted (OCT-2006) to the PDB data bank Cited for: STRUCTURE BY NMR OF 93-303. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | AF061749 mRNA. Translation: AAC29066.1. AF411044 mRNA. Translation: AAL35323.1. AK314218 mRNA. Translation: BAG36892.1. AC012676 Genomic DNA. No translation available. BC007225 mRNA. Translation: AAH07225.1. BC011855 mRNA. Translation: AAH11855.1. BC012343 mRNA. Translation: AAH12343.1. Different initiation. BC014062 mRNA. Translation: AAH14062.1. BC020248 mRNA. Translation: AAH20248.1. BC030145 mRNA. Translation: AAH30145.1. BC032100 mRNA. Translation: AAH32100.1. AF244136 mRNA. Translation: AAF66245.1. Sequence problems. | ||||||||||||||||||
| IPI | IPI00179187. IPI00294610. | ||||||||||||||||||
| RefSeq | NP_001128582.1. NM_001135110.2. NP_005138.3. NM_005147.5. | ||||||||||||||||||
| UniGene | Hs.688238. | ||||||||||||||||||
3D structure databases | |||||||||||||||||||
| PDBe RCSB PDB PDBj |
| ||||||||||||||||||
| ProteinModelPortal | Q96EY1. | ||||||||||||||||||
| SMR | Q96EY1. Positions 93-160, 203-414. | ||||||||||||||||||
| ModBase | Search... | ||||||||||||||||||
Protein-protein interaction databases | |||||||||||||||||||
| IntAct | Q96EY1. 15 interactions. | ||||||||||||||||||
| MINT | MINT-1151431. | ||||||||||||||||||
| STRING | Q96EY1. | ||||||||||||||||||
PTM databases | |||||||||||||||||||
| PhosphoSite | Q96EY1. | ||||||||||||||||||
Polymorphism databases | |||||||||||||||||||
| DMDM | 311033374. | ||||||||||||||||||
Proteomic databases | |||||||||||||||||||
| PRIDE | Q96EY1. | ||||||||||||||||||
Protocols and materials databases | |||||||||||||||||||
| DNASU | 9093. | ||||||||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||||||||
Genome annotation databases | |||||||||||||||||||
| Ensembl | ENST00000262375; ENSP00000262375; ENSG00000103423. | ||||||||||||||||||
| GeneID | 9093. | ||||||||||||||||||
| KEGG | hsa:9093. | ||||||||||||||||||
| UCSC | uc002cwk.3. human. uc002cwl.3. human. | ||||||||||||||||||
Organism-specific databases | |||||||||||||||||||
| CTD | 9093. | ||||||||||||||||||
| GeneCards | GC16P004475. | ||||||||||||||||||
| H-InvDB | HIX0012782. | ||||||||||||||||||
| HGNC | HGNC:11808. DNAJA3. | ||||||||||||||||||
| MIM | 608382. gene. | ||||||||||||||||||
| neXtProt | NX_Q96EY1. | ||||||||||||||||||
| PharmGKB | PA27410. | ||||||||||||||||||
| GenAtlas | Search... | ||||||||||||||||||
Phylogenomic databases | |||||||||||||||||||
| eggNOG | COG0484. | ||||||||||||||||||
| GeneTree | ENSGT00650000093209. | ||||||||||||||||||
| HOVERGEN | HBG051371. | ||||||||||||||||||
| InParanoid | Q96EY1. | ||||||||||||||||||
| KO | K09504. | ||||||||||||||||||
| OMA | CNGKGNE. | ||||||||||||||||||
| OrthoDB | EOG4CVG73. | ||||||||||||||||||
| PhylomeDB | Q96EY1. | ||||||||||||||||||
Enzyme and pathway databases | |||||||||||||||||||
| Pathway_Interaction_DB | trkrpathway. Neurotrophic factor-mediated Trk receptor signaling. | ||||||||||||||||||
Gene expression databases | |||||||||||||||||||
| ArrayExpress | Q96EY1. | ||||||||||||||||||
| Bgee | Q96EY1. | ||||||||||||||||||
| CleanEx | HS_DNAJA3. | ||||||||||||||||||
| Genevestigator | Q96EY1. | ||||||||||||||||||
| GermOnline | ENSG00000103423. Homo sapiens. | ||||||||||||||||||
Family and domain databases | |||||||||||||||||||
| Gene3D | G3DSA:1.10.287.110. DnaJ_N. 1 hit. G3DSA:2.10.230.10. HSP_DnaJ_cys-rich. 1 hit. | ||||||||||||||||||
| InterPro | IPR012724. DnaJ. IPR002939. DnaJ_C. IPR001623. DnaJ_N. IPR018253. Heat_shock_DnaJ_CS. IPR008971. HSP40/DnaJ_pept-bd. IPR003095. Hsp_DnaJ. IPR001305. HSP_DnaJ_Cys-rich_dom. [Graphical view] | ||||||||||||||||||
| PANTHER | PTHR24076:SF80. PTHR24076:SF80. 1 hit. | ||||||||||||||||||
| Pfam | PF00226. DnaJ. 1 hit. PF01556. DnaJ_C. 1 hit. PF00684. DnaJ_CXXCXGXG. 1 hit. [Graphical view] | ||||||||||||||||||
| PRINTS | PR00625. JDOMAIN. | ||||||||||||||||||
| SMART | SM00271. DnaJ. 1 hit. [Graphical view] | ||||||||||||||||||
| SUPFAM | SSF46565. DnaJ_N. 1 hit. SSF49493. HSP40_DnaJ_pep. 2 hits. SSF57938. HSP_DnaJ_cys-rich. 1 hit. | ||||||||||||||||||
| PROSITE | PS00636. DNAJ_1. 1 hit. PS50076. DNAJ_2. 1 hit. PS51188. ZF_CR. 1 hit. [Graphical view] | ||||||||||||||||||
| ProtoNet | Search... | ||||||||||||||||||
Other | |||||||||||||||||||
| EvolutionaryTrace | Q96EY1. | ||||||||||||||||||
| NextBio | 34071. | ||||||||||||||||||
| SOURCE | Search... | ||||||||||||||||||
Entry information
| Entry name | DNJA3_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q96EY1 Secondary accession number(s): B2RAJ5 Q9NYH8 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 16 Human chromosome 16: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with