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Protein

Leucine-rich repeat-containing protein 39

Gene

LRRC39

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Leucine-rich repeat-containing protein 39
Alternative name(s):
Densin hlg
Gene namesi
Name:LRRC39
ORF Names:UNQ6500/PRO21368
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 1

Organism-specific databases

HGNCiHGNC:28228. LRRC39.

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA142671527.

Polymorphism and mutation databases

BioMutaiLRRC39.
DMDMi74760781.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 335335Leucine-rich repeat-containing protein 39PRO_0000232580Add
BLAST

Proteomic databases

EPDiQ96DD0.
PaxDbiQ96DD0.
PeptideAtlasiQ96DD0.
PRIDEiQ96DD0.

PTM databases

iPTMnetiQ96DD0.
PhosphoSiteiQ96DD0.

Expressioni

Gene expression databases

BgeeiENSG00000122477.
CleanExiHS_LRRC39.
GenevisibleiQ96DD0. HS.

Organism-specific databases

HPAiHPA028443.
HPA029724.

Interactioni

Protein-protein interaction databases

BioGridi126062. 11 interactions.
IntActiQ96DD0. 1 interaction.
STRINGi9606.ENSP00000344470.

Structurei

3D structure databases

ProteinModelPortaliQ96DD0.
SMRiQ96DD0. Positions 15-330.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati84 – 10522LRR 1Add
BLAST
Repeati107 – 12822LRR 2Add
BLAST
Repeati130 – 15122LRR 3Add
BLAST
Repeati153 – 17624LRR 4Add
BLAST
Repeati177 – 19721LRR 5Add
BLAST
Repeati200 – 22122LRR 6Add
BLAST
Repeati223 – 24422LRR 7Add
BLAST
Repeati246 – 26722LRR 8Add
BLAST
Repeati269 – 29022LRR 9Add
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili10 – 4738Sequence analysisAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi294 – 2996Poly-Glu

Sequence similaritiesi

Contains 9 LRR (leucine-rich) repeats.Curated

Keywords - Domaini

Coiled coil, Leucine-rich repeat, Repeat

Phylogenomic databases

eggNOGiKOG0619. Eukaryota.
COG4886. LUCA.
GeneTreeiENSGT00840000129686.
HOGENOMiHOG000065739.
HOVERGENiHBG101376.
InParanoidiQ96DD0.
OMAiAYIQESR.
OrthoDBiEOG091G0CW0.
PhylomeDBiQ96DD0.
TreeFamiTF333627.

Family and domain databases

Gene3Di3.80.10.10. 1 hit.
InterProiIPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR025875. Leu-rich_rpt_4.
IPR003591. Leu-rich_rpt_typical-subtyp.
[Graphical view]
PfamiPF12799. LRR_4. 1 hit.
PF13855. LRR_8. 2 hits.
[Graphical view]
SMARTiSM00369. LRR_TYP. 6 hits.
[Graphical view]
PROSITEiPS51450. LRR. 7 hits.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q96DD0-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MTENVVCTGA VNAVKEVWEK RIKKLNEDLK REKEFQHKLV RIWEERVSLT
60 70 80 90 100
KLREKVTRED GRVILKIEKE EWKTLPSSLL KLNQLQEWQL HRTGLLKIPE
110 120 130 140 150
FIGRFQNLIV LDLSRNTISE IPPGIGLLTR LQELILSYNK IKTVPKELSN
160 170 180 190 200
CASLEKLELA VNRDICDLPQ ELSNLLKLTH LDLSMNDFTT IPLAVLNMPA
210 220 230 240 250
LEWLDMGSNK LEQLPDTIER MQNLHTLWLQ RNEITCLPQT ISNMKNLGTL
260 270 280 290 300
VLSNNKLQDI PVCMEEMANL RFVNFRDNPL KLKVSLPPSE GTDEEEEREL
310 320 330
FGLQFMHTYI QESRRRADHQ VNGSTTLPIS INTDG
Length:335
Mass (Da):38,793
Last modified:December 1, 2001 - v1
Checksum:iBAACA9D75FE5B7A3
GO
Isoform 2 (identifier: Q96DD0-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     318-335: DHQVNGSTTLPISINTDG → ALQFCVCHGQILTIYTCMALEI

Note: No experimental confirmation available.
Show »
Length:339
Mass (Da):39,395
Checksum:i6E2C4918F41D4B00
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti121 – 1211I → L.
Corresponds to variant rs34920283 [ dbSNP | Ensembl ].
VAR_034087

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei318 – 33518DHQVN…INTDG → ALQFCVCHGQILTIYTCMAL EI in isoform 2. CuratedVSP_017913Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY358131 mRNA. Translation: AAQ88498.1.
AK096892 mRNA. Translation: BAG53394.1.
AL445928 Genomic DNA. Translation: CAH72253.1.
AL445928 Genomic DNA. Translation: CAH72254.1.
CH471097 Genomic DNA. Translation: EAW72965.1.
CH471097 Genomic DNA. Translation: EAW72966.1.
CH471097 Genomic DNA. Translation: EAW72968.1.
CH471097 Genomic DNA. Translation: EAW72969.1.
BC009613 mRNA. Translation: AAH09613.1.
CCDSiCCDS58014.1. [Q96DD0-2]
CCDS766.1. [Q96DD0-1]
RefSeqiNP_001243314.1. NM_001256385.1. [Q96DD0-2]
NP_001243315.1. NM_001256386.1. [Q96DD0-1]
NP_001243316.1. NM_001256387.1. [Q96DD0-1]
NP_653221.1. NM_144620.3. [Q96DD0-1]
UniGeneiHs.44277.
Hs.729095.

Genome annotation databases

EnsembliENST00000342895; ENSP00000344470; ENSG00000122477. [Q96DD0-1]
ENST00000370137; ENSP00000359156; ENSG00000122477. [Q96DD0-1]
ENST00000370138; ENSP00000359157; ENSG00000122477. [Q96DD0-2]
ENST00000620882; ENSP00000480740; ENSG00000122477. [Q96DD0-2]
GeneIDi127495.
KEGGihsa:127495.
UCSCiuc001dsw.3. human. [Q96DD0-1]

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY358131 mRNA. Translation: AAQ88498.1.
AK096892 mRNA. Translation: BAG53394.1.
AL445928 Genomic DNA. Translation: CAH72253.1.
AL445928 Genomic DNA. Translation: CAH72254.1.
CH471097 Genomic DNA. Translation: EAW72965.1.
CH471097 Genomic DNA. Translation: EAW72966.1.
CH471097 Genomic DNA. Translation: EAW72968.1.
CH471097 Genomic DNA. Translation: EAW72969.1.
BC009613 mRNA. Translation: AAH09613.1.
CCDSiCCDS58014.1. [Q96DD0-2]
CCDS766.1. [Q96DD0-1]
RefSeqiNP_001243314.1. NM_001256385.1. [Q96DD0-2]
NP_001243315.1. NM_001256386.1. [Q96DD0-1]
NP_001243316.1. NM_001256387.1. [Q96DD0-1]
NP_653221.1. NM_144620.3. [Q96DD0-1]
UniGeneiHs.44277.
Hs.729095.

3D structure databases

ProteinModelPortaliQ96DD0.
SMRiQ96DD0. Positions 15-330.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi126062. 11 interactions.
IntActiQ96DD0. 1 interaction.
STRINGi9606.ENSP00000344470.

PTM databases

iPTMnetiQ96DD0.
PhosphoSiteiQ96DD0.

Polymorphism and mutation databases

BioMutaiLRRC39.
DMDMi74760781.

Proteomic databases

EPDiQ96DD0.
PaxDbiQ96DD0.
PeptideAtlasiQ96DD0.
PRIDEiQ96DD0.

Protocols and materials databases

DNASUi127495.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000342895; ENSP00000344470; ENSG00000122477. [Q96DD0-1]
ENST00000370137; ENSP00000359156; ENSG00000122477. [Q96DD0-1]
ENST00000370138; ENSP00000359157; ENSG00000122477. [Q96DD0-2]
ENST00000620882; ENSP00000480740; ENSG00000122477. [Q96DD0-2]
GeneIDi127495.
KEGGihsa:127495.
UCSCiuc001dsw.3. human. [Q96DD0-1]

Organism-specific databases

CTDi127495.
GeneCardsiLRRC39.
HGNCiHGNC:28228. LRRC39.
HPAiHPA028443.
HPA029724.
neXtProtiNX_Q96DD0.
PharmGKBiPA142671527.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG0619. Eukaryota.
COG4886. LUCA.
GeneTreeiENSGT00840000129686.
HOGENOMiHOG000065739.
HOVERGENiHBG101376.
InParanoidiQ96DD0.
OMAiAYIQESR.
OrthoDBiEOG091G0CW0.
PhylomeDBiQ96DD0.
TreeFamiTF333627.

Miscellaneous databases

ChiTaRSiLRRC39. human.
GeneWikiiLRRC39.
GenomeRNAii127495.
PROiQ96DD0.

Gene expression databases

BgeeiENSG00000122477.
CleanExiHS_LRRC39.
GenevisibleiQ96DD0. HS.

Family and domain databases

Gene3Di3.80.10.10. 1 hit.
InterProiIPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR025875. Leu-rich_rpt_4.
IPR003591. Leu-rich_rpt_typical-subtyp.
[Graphical view]
PfamiPF12799. LRR_4. 1 hit.
PF13855. LRR_8. 2 hits.
[Graphical view]
SMARTiSM00369. LRR_TYP. 6 hits.
[Graphical view]
PROSITEiPS51450. LRR. 7 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiLRC39_HUMAN
AccessioniPrimary (citable) accession number: Q96DD0
Secondary accession number(s): B3KUD2, D3DT56, Q5VVK7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 18, 2006
Last sequence update: December 1, 2001
Last modified: September 7, 2016
This is version 122 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 1
    Human chromosome 1: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.