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Q96CS7

- PKHB2_HUMAN

UniProt

Q96CS7 - PKHB2_HUMAN

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Protein

Pleckstrin homology domain-containing family B member 2

Gene

PLEKHB2

Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at protein leveli

Functioni

Involved in retrograde transport of recycling endosomes.2 Publications

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei20 – 201Phosphatidylserine

Names & Taxonomyi

Protein namesi
Recommended name:
Pleckstrin homology domain-containing family B member 2
Short name:
PH domain-containing family B member 2
Alternative name(s):
Evectin-2
Gene namesi
Name:PLEKHB2
Synonyms:EVT2
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 2

Organism-specific databases

HGNCiHGNC:19236. PLEKHB2.

Subcellular locationi

Recycling endosome membrane 2 Publications; Peripheral membrane protein 2 Publications
Note: Specifically detected in tubulovesicular structures, and colocalizes with TFNR.

GO - Cellular componenti

  1. endosome Source: UniProtKB-KW
  2. membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Endosome, Membrane

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA134885873.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 222222Pleckstrin homology domain-containing family B member 2PRO_0000053889Add
BLAST

Proteomic databases

MaxQBiQ96CS7.
PaxDbiQ96CS7.
PRIDEiQ96CS7.

PTM databases

PhosphoSiteiQ96CS7.

Expressioni

Gene expression databases

BgeeiQ96CS7.
CleanExiHS_PLEKHB2.
ExpressionAtlasiQ96CS7. baseline and differential.
GenevestigatoriQ96CS7.

Interactioni

Protein-protein interaction databases

BioGridi120370. 14 interactions.
IntActiQ96CS7. 3 interactions.
MINTiMINT-1180681.
STRINGi9606.ENSP00000385892.

Structurei

Secondary structure

1
222
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi4 – 129Combined sources
Beta strandi14 – 163Combined sources
Beta strandi19 – 268Combined sources
Beta strandi30 – 378Combined sources
Beta strandi42 – 487Combined sources
Helixi49 – 524Combined sources
Beta strandi53 – 586Combined sources
Helixi59 – 613Combined sources
Helixi73 – 753Combined sources
Beta strandi76 – 816Combined sources
Beta strandi86 – 905Combined sources
Helixi94 – 10815Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3AJ4X-ray1.00A/B1-110[»]
3VIAX-ray1.75A/B1-110[»]
ProteinModelPortaliQ96CS7.
SMRiQ96CS7. Positions 1-110.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini2 – 109108PHPROSITE-ProRule annotationAdd
BLAST

Domaini

The PH domain specifically binds phosphatidylserine, which is enriched in recycling endosome membranes, it doesn't recognize PIPs.

Sequence similaritiesi

Contains 1 PH domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiNOG42839.
GeneTreeiENSGT00390000013989.
HOGENOMiHOG000253945.
HOVERGENiHBG060487.
InParanoidiQ96CS7.
OMAiNLCAESA.
OrthoDBiEOG7CZK73.
PhylomeDBiQ96CS7.
TreeFamiTF331787.

Family and domain databases

Gene3Di2.30.29.30. 1 hit.
InterProiIPR001849. PH_domain.
IPR011993. PH_like_dom.
[Graphical view]
PfamiPF00169. PH. 1 hit.
[Graphical view]
SMARTiSM00233. PH. 1 hit.
[Graphical view]
PROSITEiPS50003. PH_DOMAIN. 1 hit.
[Graphical view]

Sequences (6)i

Sequence statusi: Complete.

This entry describes 6 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: Q96CS7-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MAFVKSGWLL RQSTILKRWK KNWFDLWSDG HLIYYDDQTR QNIEDKVHMP
60 70 80 90 100
MDCINIRTGQ ECRDTQPPDG KSKDCMLQIV CRDGKTISLC AESTDDCLAW
110 120 130 140 150
KFTLQDSRTN TAYVGSAVMT DETSVVSSPP PYTAYAAPAP EQAYGYGPYG
160 170 180 190 200
GAYPPGTQVV YAANGQAYAV PYQYPYAGLY GQQPANQVII RERYRDNDSD
210 220
LALGMLAGAA TGMALGSLFW VF
Length:222
Mass (Da):24,736
Last modified:December 1, 2001 - v1
Checksum:i8924F61890D416A5
GO
Isoform 2 (identifier: Q96CS7-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     142-222: QAYGYGPYGG...MALGSLFWVF → ELHSKGPKIH...PPPARPPALR

Note: No experimental confirmation available.

Show »
Length:309
Mass (Da):34,154
Checksum:iBB64D755DBDBD100
GO
Isoform 3 (identifier: Q96CS7-3) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     142-142: Missing.

Note: No experimental confirmation available.

Show »
Length:221
Mass (Da):24,608
Checksum:i6740C7F3A491AB09
GO
Isoform 4 (identifier: Q96CS7-4) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     99-222: AWKFTLQDSR...MALGSLFWVF → LMAMGHTVVR...CWQEQPRAWP

Show »
Length:170
Mass (Da):19,852
Checksum:i70B6C31C4BD6AA19
GO
Isoform 5 (identifier: Q96CS7-5) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     142-222: QAYGYGPYGG...MALGSLFWVF → DFMDSSLLTK...CWQEQPRAWP

Show »
Length:178
Mass (Da):20,375
Checksum:i7903B0346AB5F5C0
GO
Isoform 6 (identifier: Q96CS7-6) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     141-141: E → EVGRTLSLQ

Note: Gene prediction based on EST data.

Show »
Length:230
Mass (Da):25,591
Checksum:i08562F08D30AEE66
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti172 – 1721Y → H in BAA91379. (PubMed:14702039)Curated

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei99 – 222124AWKFT…LFWVF → LMAMGHTVVRTRQELKLSTL RMGRRMPCPTSTHMQDFMDS SLLTKSSFESAIETTTATWH WACWQEQPRAWP in isoform 4. 1 PublicationVSP_045163Add
BLAST
Alternative sequencei141 – 1411E → EVGRTLSLQ in isoform 6. CuratedVSP_047118
Alternative sequencei142 – 22281QAYGY…LFWVF → ELHSKGPKIHTTTSAKTQAV LPTRCFFPSESPIRRSVQIS VLLPAVNIRRRIKLTFPQPA RPRAPRSLCLWQTWFAGKRA PSLPTAATAPALPSCPSPPA PSKALPPSLAGWRSPSSAPL PPEQALAPRSFQLSKHQARP RPHRPGTPPVPAWPGVPPPP PARPPALR in isoform 2. 1 PublicationVSP_009783Add
BLAST
Alternative sequencei142 – 22281QAYGY…LFWVF → DFMDSSLLTKSSFESAIETT TATWHWACWQEQPRAWP in isoform 5. 1 PublicationVSP_045164Add
BLAST
Alternative sequencei142 – 1421Missing in isoform 3. 2 PublicationsVSP_009784

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK000790 mRNA. Translation: BAA91379.1.
AK123710 mRNA. Translation: BAG53942.1.
AK293880 mRNA. Translation: BAG57269.1.
AK302770 mRNA. Translation: BAG63978.1.
AK223338 mRNA. Translation: BAD97058.1.
AC073869 Genomic DNA. No translation available.
AC131180 Genomic DNA. No translation available.
AC009477 Genomic DNA. Translation: AAX93135.1.
CH471250 Genomic DNA. Translation: EAW51261.1.
CH471250 Genomic DNA. Translation: EAW51263.1.
CH471250 Genomic DNA. Translation: EAW51266.1.
BC001428 mRNA. Translation: AAH01428.1.
BC013991 mRNA. Translation: AAH13991.1.
BC050695 mRNA. Translation: AAH50695.2.
CCDSiCCDS2166.1. [Q96CS7-3]
CCDS46413.1. [Q96CS7-1]
CCDS58729.1. [Q96CS7-5]
CCDS58730.1. [Q96CS7-6]
RefSeqiNP_001094093.1. NM_001100623.1. [Q96CS7-1]
NP_001253991.1. NM_001267062.1.
NP_001253992.1. NM_001267063.1.
NP_001253993.1. NM_001267064.1.
NP_001253994.1. NM_001267065.1. [Q96CS7-6]
NP_001253995.1. NM_001267066.1. [Q96CS7-5]
NP_001253996.1. NM_001267067.1.
NP_001253997.1. NM_001267068.1. [Q96CS7-4]
NP_060428.2. NM_017958.2. [Q96CS7-3]
UniGeneiHs.469944.
Hs.708368.

Genome annotation databases

EnsembliENST00000234115; ENSP00000234115; ENSG00000115762. [Q96CS7-3]
ENST00000409158; ENSP00000386410; ENSG00000115762. [Q96CS7-6]
ENST00000409279; ENSP00000386666; ENSG00000115762. [Q96CS7-1]
ENST00000409612; ENSP00000386662; ENSG00000115762. [Q96CS7-1]
ENST00000438882; ENSP00000401193; ENSG00000115762. [Q96CS7-5]
GeneIDi55041.
KEGGihsa:55041.
UCSCiuc002tsf.4. human.
uc002tsg.4. human. [Q96CS7-1]
uc002tsj.4. human. [Q96CS7-3]
uc010zap.2. human.
uc010zaq.2. human.

Polymorphism databases

DMDMi48474928.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK000790 mRNA. Translation: BAA91379.1 .
AK123710 mRNA. Translation: BAG53942.1 .
AK293880 mRNA. Translation: BAG57269.1 .
AK302770 mRNA. Translation: BAG63978.1 .
AK223338 mRNA. Translation: BAD97058.1 .
AC073869 Genomic DNA. No translation available.
AC131180 Genomic DNA. No translation available.
AC009477 Genomic DNA. Translation: AAX93135.1 .
CH471250 Genomic DNA. Translation: EAW51261.1 .
CH471250 Genomic DNA. Translation: EAW51263.1 .
CH471250 Genomic DNA. Translation: EAW51266.1 .
BC001428 mRNA. Translation: AAH01428.1 .
BC013991 mRNA. Translation: AAH13991.1 .
BC050695 mRNA. Translation: AAH50695.2 .
CCDSi CCDS2166.1. [Q96CS7-3 ]
CCDS46413.1. [Q96CS7-1 ]
CCDS58729.1. [Q96CS7-5 ]
CCDS58730.1. [Q96CS7-6 ]
RefSeqi NP_001094093.1. NM_001100623.1. [Q96CS7-1 ]
NP_001253991.1. NM_001267062.1.
NP_001253992.1. NM_001267063.1.
NP_001253993.1. NM_001267064.1.
NP_001253994.1. NM_001267065.1. [Q96CS7-6 ]
NP_001253995.1. NM_001267066.1. [Q96CS7-5 ]
NP_001253996.1. NM_001267067.1.
NP_001253997.1. NM_001267068.1. [Q96CS7-4 ]
NP_060428.2. NM_017958.2. [Q96CS7-3 ]
UniGenei Hs.469944.
Hs.708368.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
3AJ4 X-ray 1.00 A/B 1-110 [» ]
3VIA X-ray 1.75 A/B 1-110 [» ]
ProteinModelPortali Q96CS7.
SMRi Q96CS7. Positions 1-110.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 120370. 14 interactions.
IntActi Q96CS7. 3 interactions.
MINTi MINT-1180681.
STRINGi 9606.ENSP00000385892.

PTM databases

PhosphoSitei Q96CS7.

Polymorphism databases

DMDMi 48474928.

Proteomic databases

MaxQBi Q96CS7.
PaxDbi Q96CS7.
PRIDEi Q96CS7.

Protocols and materials databases

DNASUi 55041.
Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000234115 ; ENSP00000234115 ; ENSG00000115762 . [Q96CS7-3 ]
ENST00000409158 ; ENSP00000386410 ; ENSG00000115762 . [Q96CS7-6 ]
ENST00000409279 ; ENSP00000386666 ; ENSG00000115762 . [Q96CS7-1 ]
ENST00000409612 ; ENSP00000386662 ; ENSG00000115762 . [Q96CS7-1 ]
ENST00000438882 ; ENSP00000401193 ; ENSG00000115762 . [Q96CS7-5 ]
GeneIDi 55041.
KEGGi hsa:55041.
UCSCi uc002tsf.4. human.
uc002tsg.4. human. [Q96CS7-1 ]
uc002tsj.4. human. [Q96CS7-3 ]
uc010zap.2. human.
uc010zaq.2. human.

Organism-specific databases

CTDi 55041.
GeneCardsi GC02P131862.
HGNCi HGNC:19236. PLEKHB2.
neXtProti NX_Q96CS7.
PharmGKBi PA134885873.
GenAtlasi Search...

Phylogenomic databases

eggNOGi NOG42839.
GeneTreei ENSGT00390000013989.
HOGENOMi HOG000253945.
HOVERGENi HBG060487.
InParanoidi Q96CS7.
OMAi NLCAESA.
OrthoDBi EOG7CZK73.
PhylomeDBi Q96CS7.
TreeFami TF331787.

Miscellaneous databases

ChiTaRSi PLEKHB2. human.
GeneWikii PLEKHB2.
GenomeRNAii 55041.
NextBioi 58499.
PROi Q96CS7.

Gene expression databases

Bgeei Q96CS7.
CleanExi HS_PLEKHB2.
ExpressionAtlasi Q96CS7. baseline and differential.
Genevestigatori Q96CS7.

Family and domain databases

Gene3Di 2.30.29.30. 1 hit.
InterProi IPR001849. PH_domain.
IPR011993. PH_like_dom.
[Graphical view ]
Pfami PF00169. PH. 1 hit.
[Graphical view ]
SMARTi SM00233. PH. 1 hit.
[Graphical view ]
PROSITEi PS50003. PH_DOMAIN. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1; 3; 4 AND 5).
    Tissue: Cerebellum, Colon, Lung and Testis.
  2. Suzuki Y., Sugano S., Totoki Y., Toyoda A., Takeda T., Sakaki Y., Tanaka A., Yokoyama S.
    Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3).
    Tissue: Testis.
  3. "Generation and annotation of the DNA sequences of human chromosomes 2 and 4."
    Hillier L.W., Graves T.A., Fulton R.S., Fulton L.A., Pepin K.H., Minx P., Wagner-McPherson C., Layman D., Wylie K., Sekhon M., Becker M.C., Fewell G.A., Delehaunty K.D., Miner T.L., Nash W.E., Kremitzki C., Oddy L., Du H.
    , Sun H., Bradshaw-Cordum H., Ali J., Carter J., Cordes M., Harris A., Isak A., van Brunt A., Nguyen C., Du F., Courtney L., Kalicki J., Ozersky P., Abbott S., Armstrong J., Belter E.A., Caruso L., Cedroni M., Cotton M., Davidson T., Desai A., Elliott G., Erb T., Fronick C., Gaige T., Haakenson W., Haglund K., Holmes A., Harkins R., Kim K., Kruchowski S.S., Strong C.M., Grewal N., Goyea E., Hou S., Levy A., Martinka S., Mead K., McLellan M.D., Meyer R., Randall-Maher J., Tomlinson C., Dauphin-Kohlberg S., Kozlowicz-Reilly A., Shah N., Swearengen-Shahid S., Snider J., Strong J.T., Thompson J., Yoakum M., Leonard S., Pearman C., Trani L., Radionenko M., Waligorski J.E., Wang C., Rock S.M., Tin-Wollam A.-M., Maupin R., Latreille P., Wendl M.C., Yang S.-P., Pohl C., Wallis J.W., Spieth J., Bieri T.A., Berkowicz N., Nelson J.O., Osborne J., Ding L., Meyer R., Sabo A., Shotland Y., Sinha P., Wohldmann P.E., Cook L.L., Hickenbotham M.T., Eldred J., Williams D., Jones T.A., She X., Ciccarelli F.D., Izaurralde E., Taylor J., Schmutz J., Myers R.M., Cox D.R., Huang X., McPherson J.D., Mardis E.R., Clifton S.W., Warren W.C., Chinwalla A.T., Eddy S.R., Marra M.A., Ovcharenko I., Furey T.S., Miller W., Eichler E.E., Bork P., Suyama M., Torrents D., Waterston R.H., Wilson R.K.
    Nature 434:724-731(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  5. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
    Tissue: Pancreas and Skin.
  6. Cited for: X-RAY CRYSTALLOGRAPHY (1.0 ANGSTROMS) OF 1-110, FUNCTION, SUBCELLULAR LOCATION.
  7. "Structural basis of the strict phospholipid binding specificity of the pleckstrin homology domain of human evectin-2."
    Okazaki S., Kato R., Uchida Y., Taguchi T., Arai H., Wakatsuki S.
    Acta Crystallogr. D 68:117-123(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.75 ANGSTROMS) OF 1-110 IN COMPLEX WITH O-PHOSPHOSERINE, FUNCTION, SUBCELLULAR LOCATION.

Entry informationi

Entry nameiPKHB2_HUMAN
AccessioniPrimary (citable) accession number: Q96CS7
Secondary accession number(s): B4DF08
, B4DZ66, B8ZZN1, Q53FF1, Q53TH7, Q86W37, Q9BV75, Q9NWK1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 29, 2004
Last sequence update: December 1, 2001
Last modified: November 26, 2014
This is version 111 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Human chromosome 2
    Human chromosome 2: entries, gene names and cross-references to MIM
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3