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Protein

Cyclic AMP-responsive element-binding protein 3-like protein 1

Gene

CREB3L1

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Transcription factor involved in unfolded protein response (UPR). In the absence of endoplasmic reticulum (ER) stress, inserted into ER membranes, with N-terminal DNA-binding and transcription activation domains oriented toward the cytosolic face of the membrane. In response to ER stress, transported to the Golgi, where it is cleaved in a site-specific manner by resident proteases S1P/MBTPS1 and S2P/MBTPS2. The released N-terminal cytosolic domain is translocated to the nucleus to effect transcription of specific target genes. Plays a critical role in bone formation through the transcription of COL1A1, and possibly COL1A2, and the secretion of bone matrix proteins. Directly binds to the UPR element (UPRE)-like sequence in an osteoblast-specific COL1A1 promoter region and induces its transcription. Does not regulate COL1A1 in other tissues, such as skin (By similarity). Required to protect astrocytes from ER stress-induced cell death. In astrocytes, binds to the cAMP response element (CRE) of the BiP/HSPA5 promoter and participate in its transcriptional activation (By similarity). May play a role in limiting virus spread by inhibiting proliferation of virus-infected cells. Upon infection with diverse DNA and RNA viruses, inhibits cell-cycle progression by binding to promoters and activating transcription of genes encoding cell-cycle inhibitors, such as p21/CDKN1A (PubMed:21767813). Binds the DNA consensus sequence 5'-GTGXGCXGC-3' (PubMed:21767813).By similarity2 Publications

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Activator, Developmental protein

Keywords - Biological processi

Transcription, Transcription regulation, Unfolded protein response

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

SIGNORiQ96BA8.

Names & Taxonomyi

Protein namesi
Recommended name:
Cyclic AMP-responsive element-binding protein 3-like protein 1
Short name:
cAMP-responsive element-binding protein 3-like protein 1
Alternative name(s):
Old astrocyte specifically-induced substance
Short name:
OASIS
Cleaved into the following chain:
Gene namesi
Name:CREB3L1
Synonyms:OASIS
ORF Names:PSEC0238
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 11

Organism-specific databases

HGNCiHGNC:18856. CREB3L1.

Subcellular locationi

Processed cyclic AMP-responsive element-binding protein 3-like protein 1 :

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 374374CytoplasmicSequence analysisAdd
BLAST
Transmembranei375 – 39521Helical; Signal-anchor for type II membrane proteinSequence analysisAdd
BLAST
Topological domaini396 – 519124LumenalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Endoplasmic reticulum, Membrane, Nucleus

Pathology & Biotechi

Involvement in diseasei

Osteogenesis imperfecta 16 (OI16)1 Publication
The disease may be caused by mutations affecting the gene represented in this entry. OI16 affected patients show a genomic deletion encompassing CREB3L1 and the first exon of DGKZ. The absence of this exon does not affect all DGKZ isoforms, some are still produced at normal level. It cannot be ruled out that DGKZ could contribute to the phenotype, but in view of its role in bone formation, CREB3L1 is a strong OI16-causing candidate (PubMed:24079343). This hypothesis is corroborated by the observation of CREB3L1 knockout mice which exhibit features reminiscent of severe human osteogenesis imperfecta.1 Publication
Disease descriptionAn autosomal recessive form of osteogenesis imperfecta, a connective tissue disorder characterized by low bone mass, bone fragility and susceptibility to fractures after minimal trauma. Disease severity ranges from very mild forms without fractures to intrauterine fractures and perinatal lethality. Extraskeletal manifestations, which affect a variable number of patients, are dentinogenesis imperfecta, hearing loss, and blue sclerae. OI16 is a severe form.
See also OMIM:616229

Mutagenesis

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Mutagenesisi392 – 3921P → A: Abolishes proteolytic cleavage by S2P; when associated with A-395. 1 Publication
Mutagenesisi392 – 3921P → L: Abolishes proteolytic cleavage by S2P. 1 Publication
Mutagenesisi395 – 3951P → A: Abolishes proteolytic cleavage by S2P; when associated with A-392. 1 Publication
Mutagenesisi423 – 4231R → A: Abolishes proteolytic cleavage by S1P. 2 Publications
Mutagenesisi426 – 4261L → V: Abolishes proteolytic cleavage by S1P. 1 Publication

Keywords - Diseasei

Osteogenesis imperfecta

Organism-specific databases

MalaCardsiCREB3L1.
MIMi616229. phenotype.
Orphaneti79105. Myxofibrosarcoma.
216812. Osteogenesis imperfecta type 3.
PharmGKBiPA134960108.

Polymorphism and mutation databases

DMDMi74751763.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 519519Cyclic AMP-responsive element-binding protein 3-like protein 1PRO_0000288064Add
BLAST
Chaini1 – ?Processed cyclic AMP-responsive element-binding protein 3-like protein 1PRO_0000296206

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi492 – 4921N-linked (GlcNAc...)Sequence analysis
Glycosylationi513 – 5131N-linked (GlcNAc...)Sequence analysis

Post-translational modificationi

Upon ER stress, translocated to the Golgi apparatus, where it is processed by regulated intramembrane proteolysis (RIP) to release the cytosol-facing N-terminal transcription factor domain. The cleavage is performed sequentially by site-1 and site-2 proteases (S1P/MBTPS1 and S2P/MBTPS2).2 Publications
N-glycosylated.By similarity
Ubiquitinated by HRD1/SYVN1; undergoes 'Lys-48'-linked ubiquitination, followed by rapid proteasomal degradation under normal conditions. Upon ER stress, SYVN1 E3 ubiquitin-protein ligase dissociates from its substrate, ubiquitination does not occur and CREB3L1 is stabilized.1 Publication

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sitei426 – 4272Cleavage; by S1PBy similarity

Keywords - PTMi

Glycoprotein, Ubl conjugation

Proteomic databases

MaxQBiQ96BA8.
PaxDbiQ96BA8.
PRIDEiQ96BA8.

PTM databases

iPTMnetiQ96BA8.
PhosphoSiteiQ96BA8.

Expressioni

Tissue specificityi

Expressed in several tissues, with highest levels in pancreas and prostate. Expressed at relatively lower levels in brain.1 Publication

Gene expression databases

BgeeiQ96BA8.
CleanExiHS_CREB3L1.
ExpressionAtlasiQ96BA8. baseline and differential.
GenevisibleiQ96BA8. HS.

Organism-specific databases

HPAiCAB026151.
HPA024069.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
C5P010313EBI-6942903,EBI-8558308
FAM3CQ925203EBI-6942903,EBI-2876774
FXYD6Q9H0Q33EBI-6942903,EBI-713304
GPR25O001553EBI-6942903,EBI-10178951
JAGN1Q8N5M93EBI-6942903,EBI-10266796
MFSD5Q6N0753EBI-6942903,EBI-3920969
NRMQ8IXM63EBI-6942903,EBI-10262547
PGRMC1Q6IB113EBI-6942903,EBI-10249941
PRKAB2O437413EBI-6942903,EBI-1053424
RUNX1T1Q06455-43EBI-6942903,EBI-10224192
SLC30A8Q8IWU43EBI-6942903,EBI-10262251
SLC35B4Q969S03EBI-6942903,EBI-10281213
TMEM147Q9BVK83EBI-6942903,EBI-348587
TMEM218A2RU143EBI-6942903,EBI-10173151
TMEM234Q8WY983EBI-6942903,EBI-8642211
TSPOP305363EBI-6942903,EBI-6623146

Protein-protein interaction databases

BioGridi124786. 31 interactions.
IntActiQ96BA8. 18 interactions.
MINTiMINT-268046.
STRINGi9606.ENSP00000434939.

Structurei

3D structure databases

ProteinModelPortaliQ96BA8.
SMRiQ96BA8. Positions 292-360.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini290 – 35364bZIPPROSITE-ProRule annotationAdd
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni1 – 6060Required for transcriptional activationAdd
BLAST
Regioni292 – 32130Basic motifPROSITE-ProRule annotationAdd
BLAST
Regioni332 – 35322Leucine-zipperPROSITE-ProRule annotationAdd
BLAST

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi392 – 3954S2P recognition1 Publication
Motifi423 – 4264S1P recognition1 Publication

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi146 – 1549Poly-Ala

Sequence similaritiesi

Belongs to the bZIP family. ATF subfamily.Curated
Contains 1 bZIP (basic-leucine zipper) domain.PROSITE-ProRule annotation

Keywords - Domaini

Signal-anchor, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG0709. Eukaryota.
ENOG410ZZQM. LUCA.
GeneTreeiENSGT00520000055538.
HOGENOMiHOG000060150.
HOVERGENiHBG057480.
InParanoidiQ96BA8.
KOiK09048.
OMAiEPPDGWE.
OrthoDBiEOG7327QN.
PhylomeDBiQ96BA8.
TreeFamiTF316079.

Family and domain databases

InterProiIPR004827. bZIP.
IPR001630. Leuzip_CREB.
IPR029805. OASIS.
[Graphical view]
PANTHERiPTHR22952:SF24. PTHR22952:SF24. 2 hits.
PfamiPF00170. bZIP_1. 1 hit.
[Graphical view]
PRINTSiPR00041. LEUZIPPRCREB.
SMARTiSM00338. BRLZ. 1 hit.
[Graphical view]
PROSITEiPS50217. BZIP. 1 hit.
PS00036. BZIP_BASIC. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q96BA8-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MDAVLEPFPA DRLFPGSSFL DLGDLNESDF LNNAHFPEHL DHFTENMEDF
60 70 80 90 100
SNDLFSSFFD DPVLDEKSPL LDMELDSPTP GIQAEHSYSL SGDSAPQSPL
110 120 130 140 150
VPIKMEDTTQ DAEHGAWALG HKLCSIMVKQ EQSPELPVDP LAAPSAMAAA
160 170 180 190 200
AAMATTPLLG LSPLSRLPIP HQAPGEMTQL PVIKAEPLEV NQFLKVTPED
210 220 230 240 250
LVQMPPTPPS SHGSDSDGSQ SPRSLPPSSP VRPMARSSTA ISTSPLLTAP
260 270 280 290 300
HKLQGTSGPL LLTEEEKRTL IAEGYPIPTK LPLTKAEEKA LKRVRRKIKN
310 320 330 340 350
KISAQESRRK KKEYVECLEK KVETFTSENN ELWKKVETLE NANRTLLQQL
360 370 380 390 400
QKLQTLVTNK ISRPYKMAAT QTGTCLMVAA LCFVLVLGSL VPCLPEFSSG
410 420 430 440 450
SQTVKEDPLA ADGVYTASQM PSRSLLFYDD GAGLWEDGRS TLLPMEPPDG
460 470 480 490 500
WEINPGGPAE QRPRDHLQHD HLDSTHETTK YLSEAWPKDG GNGTSPDFSH
510
SKEWFHDRDL GPNTTIKLS
Length:519
Mass (Da):57,005
Last modified:December 1, 2001 - v1
Checksum:iD08133CD8B02A3AC
GO
Isoform 2 (identifier: Q96BA8-2) [UniParc]FASTAAdd to basket

Also known as: OASISv1

The sequence of this isoform differs from the canonical sequence as follows:
     111-198: Missing.

Show »
Length:431
Mass (Da):47,783
Checksum:i7DD049831DE6024C
GO

Sequence cautioni

The sequence BAC11681.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti249 – 2491A → P in AAH14097 (PubMed:15489334).Curated

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti411 – 4111A → T.
Corresponds to variant rs35652107 [ dbSNP | Ensembl ].
VAR_032392

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei111 – 19888Missing in isoform 2. CuratedVSP_025632Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB063321 mRNA. Translation: BAC01278.1.
BC014097 mRNA. Translation: AAH14097.1.
BC015781 mRNA. Translation: AAH15781.1.
AK075538 mRNA. Translation: BAC11681.1. Different initiation.
CCDSiCCDS53620.1. [Q96BA8-1]
RefSeqiNP_443086.1. NM_052854.3. [Q96BA8-1]
UniGeneiHs.405961.

Genome annotation databases

EnsembliENST00000621158; ENSP00000481956; ENSG00000157613. [Q96BA8-1]
GeneIDi90993.
KEGGihsa:90993.
UCSCiuc021qik.3. human. [Q96BA8-1]

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB063321 mRNA. Translation: BAC01278.1.
BC014097 mRNA. Translation: AAH14097.1.
BC015781 mRNA. Translation: AAH15781.1.
AK075538 mRNA. Translation: BAC11681.1. Different initiation.
CCDSiCCDS53620.1. [Q96BA8-1]
RefSeqiNP_443086.1. NM_052854.3. [Q96BA8-1]
UniGeneiHs.405961.

3D structure databases

ProteinModelPortaliQ96BA8.
SMRiQ96BA8. Positions 292-360.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi124786. 31 interactions.
IntActiQ96BA8. 18 interactions.
MINTiMINT-268046.
STRINGi9606.ENSP00000434939.

PTM databases

iPTMnetiQ96BA8.
PhosphoSiteiQ96BA8.

Polymorphism and mutation databases

DMDMi74751763.

Proteomic databases

MaxQBiQ96BA8.
PaxDbiQ96BA8.
PRIDEiQ96BA8.

Protocols and materials databases

DNASUi90993.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000621158; ENSP00000481956; ENSG00000157613. [Q96BA8-1]
GeneIDi90993.
KEGGihsa:90993.
UCSCiuc021qik.3. human. [Q96BA8-1]

Organism-specific databases

CTDi90993.
GeneCardsiCREB3L1.
HGNCiHGNC:18856. CREB3L1.
HPAiCAB026151.
HPA024069.
MalaCardsiCREB3L1.
MIMi616215. gene.
616229. phenotype.
neXtProtiNX_Q96BA8.
Orphaneti79105. Myxofibrosarcoma.
216812. Osteogenesis imperfecta type 3.
PharmGKBiPA134960108.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG0709. Eukaryota.
ENOG410ZZQM. LUCA.
GeneTreeiENSGT00520000055538.
HOGENOMiHOG000060150.
HOVERGENiHBG057480.
InParanoidiQ96BA8.
KOiK09048.
OMAiEPPDGWE.
OrthoDBiEOG7327QN.
PhylomeDBiQ96BA8.
TreeFamiTF316079.

Enzyme and pathway databases

SIGNORiQ96BA8.

Miscellaneous databases

ChiTaRSiCREB3L1. human.
GenomeRNAii90993.
PROiQ96BA8.
SOURCEiSearch...

Gene expression databases

BgeeiQ96BA8.
CleanExiHS_CREB3L1.
ExpressionAtlasiQ96BA8. baseline and differential.
GenevisibleiQ96BA8. HS.

Family and domain databases

InterProiIPR004827. bZIP.
IPR001630. Leuzip_CREB.
IPR029805. OASIS.
[Graphical view]
PANTHERiPTHR22952:SF24. PTHR22952:SF24. 2 hits.
PfamiPF00170. bZIP_1. 1 hit.
[Graphical view]
PRINTSiPR00041. LEUZIPPRCREB.
SMARTiSM00338. BRLZ. 1 hit.
[Graphical view]
PROSITEiPS50217. BZIP. 1 hit.
PS00036. BZIP_BASIC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "OASIS is a transcriptional activator of CREB/ATF family with a transmembrane domain."
    Omori Y., Imai J., Suzuki Y., Watanabe S., Tanigami A., Sugano S.
    Biochem. Biophys. Res. Commun. 293:470-477(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), DNA-BINDING, ALTERNATIVE SPLICING (ISOFORM 2), SUBCELLULAR LOCATION, TISSUE SPECIFICITY.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
    Tissue: Colon.
  3. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 253-519.
    Tissue: Embryo.
  4. "Cleavage of the membrane-bound transcription factor OASIS in response to endoplasmic reticulum stress."
    Murakami T., Kondo S., Ogata M., Kanemoto S., Saito A., Wanaka A., Imaizumi K.
    J. Neurochem. 96:1090-1100(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBCELLULAR LOCATION, MUTAGENESIS OF PRO-392; ARG-423 AND LEU-426, PROTEOLYTIC PROCESSING.
  5. "The membrane-bound transcription factor CREB3L1 is activated in response to virus infection to inhibit proliferation of virus-infected cells."
    Denard B., Seemann J., Chen Q., Gay A., Huang H., Chen Y., Ye J.
    Cell Host Microbe 10:65-74(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION IN VIRAL INFECTIONS, IDENTIFICATION OF TARGET GENES, SUBCELLULAR LOCATION, PROTEOLYTIC CLEAVAGE, MUTAGENESIS OF PRO-392; PRO-395 AND ARG-423.
  6. Cited for: UBIQUITINATION.
  7. "Deficiency for the ER-stress transducer OASIS causes severe recessive osteogenesis imperfecta in humans."
    Symoens S., Malfait F., D'hondt S., Callewaert B., Dheedene A., Steyaert W., Baechinger H.P., De Paepe A., Kayserili H., Coucke P.J.
    Orphanet J. Rare Dis. 8:154-154(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: POSSIBLE INVOLVEMENT IN OI16.

Entry informationi

Entry nameiCR3L1_HUMAN
AccessioniPrimary (citable) accession number: Q96BA8
Secondary accession number(s): Q8N2D5, Q96CP0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 29, 2007
Last sequence update: December 1, 2001
Last modified: June 8, 2016
This is version 126 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 11
    Human chromosome 11: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.