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Protein
Submitted name:

ZYX protein

Gene

ZYX

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
ZYX proteinImported
Gene namesi
Name:ZYXImported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA37765.

PTM / Processingi

Proteomic databases

PaxDbiQ96AF9.
PRIDEiQ96AF9.

Expressioni

Gene expression databases

GenevisibleiQ96AF9. HS.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000324422.

Structurei

3D structure databases

ProteinModelPortaliQ96AF9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini276 – 33560LIM zinc-bindingInterPro annotationAdd
BLAST
Domaini336 – 39661LIM zinc-bindingInterPro annotationAdd
BLAST
Domaini397 – 46670LIM zinc-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 3 LIM zinc-binding domains.UniRule annotation

Keywords - Domaini

LIM domainUniRule annotation

Phylogenomic databases

eggNOGiKOG1701. Eukaryota.
ENOG410Y3GP. LUCA.
HOVERGENiHBG093602.
KOiK06273.

Family and domain databases

Gene3Di2.10.110.10. 3 hits.
InterProiIPR001781. Znf_LIM.
[Graphical view]
PfamiPF00412. LIM. 3 hits.
[Graphical view]
SMARTiSM00132. LIM. 3 hits.
[Graphical view]
PROSITEiPS50023. LIM_DOMAIN_2. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q96AF9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
RPLSSPSLLL PCVPPEEEGG PEAPIPPPPQ PREKVSSIDL EIDSLSSLLD
60 70 80 90 100
DMTKNDPFKA RVSSGYVPPP VATPFSSKSS TKPAAGGTAP LPPWKSPSSS
110 120 130 140 150
QPLPQVPAPA QSQTQFHVQP QPQPKPQVQL HVQSQTQPVS LANTQPRGPP
160 170 180 190 200
ASSPAPAPKF SPVTPKFTPV ASKFSPGAPG GSGSQPNQKL GHPEALSAGT
210 220 230 240 250
GSPQPPSFTY AQQREKPRVQ EKQHPVPPPA QNQNQVRSPG APGPLTLKEV
260 270 280 290 300
EELEQLTQQL MQDMEHPQRQ NVAVNELCGR CHQPLARAQP AVRALGQLFH
310 320 330 340 350
IACFTCHQCA QQLQGQQFYS LEGAPYCEGC YTDTLEKCNT CGEPITDRML
360 370 380 390 400
RATGKAYHPH CFTCVVCARP LEGTSFIVDQ ANRPHCVPDY HKQYAPRCSV
410 420 430 440 450
CSEPIMPEPG RDETVRVVAL DKNFHMKCYK CEDCGKPLSI EADDNGCFPL
460
DGHVLCRKCH TARAQT
Length:466
Mass (Da):50,472
Last modified:March 1, 2004 - v2
Checksum:i94FCC8FF8D5F15B1
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC017183 mRNA. Translation: AAH17183.2.
RefSeqiNP_001010972.1. NM_001010972.1.
NP_003452.1. NM_003461.4.
UniGeneiHs.490415.

Genome annotation databases

GeneIDi7791.
KEGGihsa:7791.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC017183 mRNA. Translation: AAH17183.2.
RefSeqiNP_001010972.1. NM_001010972.1.
NP_003452.1. NM_003461.4.
UniGeneiHs.490415.

3D structure databases

ProteinModelPortaliQ96AF9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9606.ENSP00000324422.

Proteomic databases

PaxDbiQ96AF9.
PRIDEiQ96AF9.

Protocols and materials databases

DNASUi7791.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi7791.
KEGGihsa:7791.

Organism-specific databases

CTDi7791.
PharmGKBiPA37765.

Phylogenomic databases

eggNOGiKOG1701. Eukaryota.
ENOG410Y3GP. LUCA.
HOVERGENiHBG093602.
KOiK06273.

Miscellaneous databases

ChiTaRSiZYX. human.
GenomeRNAii7791.

Gene expression databases

GenevisibleiQ96AF9. HS.

Family and domain databases

Gene3Di2.10.110.10. 3 hits.
InterProiIPR001781. Znf_LIM.
[Graphical view]
PfamiPF00412. LIM. 3 hits.
[Graphical view]
SMARTiSM00132. LIM. 3 hits.
[Graphical view]
PROSITEiPS50023. LIM_DOMAIN_2. 3 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: KidneyImported.

Entry informationi

Entry nameiQ96AF9_HUMAN
AccessioniPrimary (citable) accession number: Q96AF9
Entry historyi
Integrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: March 1, 2004
Last modified: June 8, 2016
This is version 88 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.