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Protein

Hermansky-Pudlak syndrome 3 protein

Gene

HPS3

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Involved in early stages of melanosome biogenesis and maturation.By similarity

GO - Biological processi

  1. organelle organization Source: Ensembl
  2. pigmentation Source: Ensembl
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Hermansky-Pudlak syndrome 3 protein
Gene namesi
Name:HPS3
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 3

Organism-specific databases

HGNCiHGNC:15597. HPS3.

Subcellular locationi

Cytoplasm By similarity

GO - Cellular componenti

  1. BLOC-2 complex Source: FlyBase
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

Pathology & Biotechi

Involvement in diseasei

Hermansky-Pudlak syndrome 32 Publications

The disease is caused by mutations affecting the gene represented in this entry.

Disease descriptionA form of Hermansky-Pudlak syndrome, a genetically heterogeneous autosomal recessive disorder characterized by oculocutaneous albinism, bleeding due to platelet storage pool deficiency, and lysosomal storage defects. This syndrome results from defects of diverse cytoplasmic organelles including melanosomes, platelet dense granules and lysosomes. Ceroid storage in the lungs is associated with pulmonary fibrosis, a common cause of premature death in individuals with HPS.

See also OMIM:614072
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti397 – 3971R → W in HPS3; mild. 1 Publication
VAR_013251

Keywords - Diseasei

Albinism, Disease mutation, Hermansky-Pudlak syndrome

Organism-specific databases

MIMi614072. phenotype.
Orphaneti231512. Hermansky-Pudlak syndrome without pulmonary fibrosis.
PharmGKBiPA29433.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 10041004Hermansky-Pudlak syndrome 3 proteinPRO_0000084050Add
BLAST

Proteomic databases

MaxQBiQ969F9.
PaxDbiQ969F9.
PRIDEiQ969F9.

PTM databases

PhosphoSiteiQ969F9.

Expressioni

Tissue specificityi

Widely expressed. Higher levels of expression are observed in kidney, liver and placenta.

Gene expression databases

BgeeiQ969F9.
CleanExiHS_HPS3.
ExpressionAtlasiQ969F9. baseline and differential.
GenevestigatoriQ969F9.

Organism-specific databases

HPAiHPA046281.
HPA052778.

Interactioni

Protein-protein interaction databases

BioGridi124064. 6 interactions.
STRINGi9606.ENSP00000296051.

Structurei

3D structure databases

ProteinModelPortaliQ969F9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi172 – 1765Clathrin-bindingSequence Analysis

Phylogenomic databases

eggNOGiNOG69808.
GeneTreeiENSGT00390000015458.
HOGENOMiHOG000013119.
HOVERGENiHBG023715.
InParanoidiQ969F9.
OMAiVCALRIQ.
OrthoDBiEOG7NKKJF.
PhylomeDBiQ969F9.
TreeFamiTF324432.

Family and domain databases

InterProiIPR017216. HPS3.
IPR029438. HPS3_C.
IPR028167. HPS3_central_dom.
IPR029437. HPS3_N.
[Graphical view]
PfamiPF14763. HPS3_C. 1 hit.
PF14762. HPS3_Mid. 1 hit.
PF14761. HPS3_N. 1 hit.
[Graphical view]
PIRSFiPIRSF037473. BLOC-2_complex_Hps3. 1 hit.

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q969F9-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MVQLYNLHPF GSQQVVPCKL EPDRFCGGGR DALFVAAGCK VEAFAVAGQE
60 70 80 90 100
LCQPRCAFST LGRVLRLAYS EAGDYLVAIE EKNKATFLRA YVNWRNKRTE
110 120 130 140 150
NSRVCIRMIG HNVEGPFSKA FRDQMYIIEM PLSEAPLCIS CCPVKGDLLV
160 170 180 190 200
GCTNKLVLFS LKYQIINEEF SLLDFERSLI IHIDNITPVE VSFCVGYVAV
210 220 230 240 250
MSDLEVLIVK LESGPKNGER VHHHPHKTNN RIRRTEEGIS NEISQLESDD
260 270 280 290 300
FVICQKPLEL LGEKSEQSGL SVTLESTGLA DEKRKYSHFQ HLLYRRFAPD
310 320 330 340 350
ISSYVLSDDI KLHSLQLLPI YQTGSLTSDG KNLSQEKELL SLFCFFSLPH
360 370 380 390 400
VGYLYMVVKS VELMSVYQYP EKSQQAVLTP QFLHVITSNN LQCFTVRCSA
410 420 430 440 450
AAAREEDPYM DTTLKACPPV SMDVCALRIQ LFIGLKAICH FKNHIILLTK
460 470 480 490 500
AEPEAIPERR QSPKRLLSRK DTSVKIKIPP VAEAGWNLYI VNTISPVQLY
510 520 530 540 550
KEMVDYSNTY KTVKTQSCIH LLSEAHLLVR AALMDASQLE PGEKAELLEA
560 570 580 590 600
FKESCGHLGD CYSRLDSQHS HLTLPYYKMS GLSMAEVLAR TDWTVEDGLQ
610 620 630 640 650
KYERGLIFYI NHSLYENLDE ELNEELAAKV VQMFYVAEPK QVPHILCSPS
660 670 680 690 700
MKNINPLTAM SYLRKLDTSG FSSILVTLTK AAVALKMGDL DMHRNEMKSH
710 720 730 740 750
SEMKLVCGFI LEPRLLIQQR KGQIVPTELA LHLKETQPGL LVASVLGLQK
760 770 780 790 800
NNKIGIEEAD SFFKVLCAKD EDTIPQLLVD FWEAQLVACL PDVVLQELFF
810 820 830 840 850
KLTSQYIWRL SKRQPPDTTP LRTSEDLINA CSHYGLIYPW VHVVISSDSL
860 870 880 890 900
ADKNYTEDLS KLQSLICGPS FDIASIIPFL EPLSEDTIAG LSVHVLCRTR
910 920 930 940 950
LKEYEQCIDI LLERCPEAVI PYANHELKEE NRTLWWKKLL PELCQRIKCG
960 970 980 990 1000
GEKYQLYLSS LKETLSIVAV ELELKDFMNV LPEDGTATFF LPYLLYCSRK

KPLT
Length:1,004
Mass (Da):113,736
Last modified:December 1, 2001 - v1
Checksum:iECA8FDF6AE37B47A
GO
Isoform 2 (identifier: Q969F9-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     864-890: SLICGPSFDIASIIPFLEPLSEDTIAG → LPLFRSWSHFQKTLLPASVSMFCVVHA
     891-1004: Missing.

Note: No experimental confirmation available.

Show »
Length:890
Mass (Da):100,629
Checksum:iDC3FF99607BC83C0
GO

Sequence cautioni

The sequence AAH16901.1 differs from that shown. Reason: Erroneous initiation. Curated
The sequence AAH22062.2 differs from that shown. Reason: Erroneous initiation. Curated
The sequence BAB71221.1 differs from that shown. Reason: Erroneous initiation. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti144 – 1452VK → AR in AAH22062 (PubMed:15489334).Curated
Sequence conflicti556 – 5561G → E in BAB71221 (PubMed:14702039).Curated
Sequence conflicti563 – 5631S → T in AAH22062 (PubMed:15489334).Curated

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti275 – 2751E → K.
Corresponds to variant rs34388030 [ dbSNP | Ensembl ].
VAR_038379
Natural varianti397 – 3971R → Q in a colorectal cancer sample; somatic mutation. 1 Publication
VAR_035928
Natural varianti397 – 3971R → W in HPS3; mild. 1 Publication
VAR_013251

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei864 – 89027SLICG…DTIAG → LPLFRSWSHFQKTLLPASVS MFCVVHA in isoform 2. 1 PublicationVSP_003878Add
BLAST
Alternative sequencei891 – 1004114Missing in isoform 2. 1 PublicationVSP_003879Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF375663 Genomic DNA. Translation: AAK84131.1.
AY033141 mRNA. Translation: AAK53457.1.
AK026357 mRNA. Translation: BAB15459.1.
AK056575 mRNA. Translation: BAB71221.1. Different initiation.
AK291631 mRNA. Translation: BAF84320.1.
CH471052 Genomic DNA. Translation: EAW78886.1.
BC016901 mRNA. Translation: AAH16901.1. Different initiation.
BC022062 mRNA. Translation: AAH22062.2. Different initiation.
BC040359 mRNA. Translation: AAH40359.1.
CCDSiCCDS3140.1. [Q969F9-1]
RefSeqiNP_115759.2. NM_032383.3. [Q969F9-1]
UniGeneiHs.558314.
Hs.591311.

Genome annotation databases

EnsembliENST00000296051; ENSP00000296051; ENSG00000163755. [Q969F9-1]
GeneIDi84343.
KEGGihsa:84343.
UCSCiuc003ewu.1. human. [Q969F9-1]

Polymorphism databases

DMDMi20532121.

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Cross-referencesi

Web resourcesi

Mutations of the HPS3 gene

Retina International's Scientific Newsletter

Albinism database (ADB)

HPS3 mutations

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF375663 Genomic DNA. Translation: AAK84131.1.
AY033141 mRNA. Translation: AAK53457.1.
AK026357 mRNA. Translation: BAB15459.1.
AK056575 mRNA. Translation: BAB71221.1. Different initiation.
AK291631 mRNA. Translation: BAF84320.1.
CH471052 Genomic DNA. Translation: EAW78886.1.
BC016901 mRNA. Translation: AAH16901.1. Different initiation.
BC022062 mRNA. Translation: AAH22062.2. Different initiation.
BC040359 mRNA. Translation: AAH40359.1.
CCDSiCCDS3140.1. [Q969F9-1]
RefSeqiNP_115759.2. NM_032383.3. [Q969F9-1]
UniGeneiHs.558314.
Hs.591311.

3D structure databases

ProteinModelPortaliQ969F9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi124064. 6 interactions.
STRINGi9606.ENSP00000296051.

PTM databases

PhosphoSiteiQ969F9.

Polymorphism databases

DMDMi20532121.

Proteomic databases

MaxQBiQ969F9.
PaxDbiQ969F9.
PRIDEiQ969F9.

Protocols and materials databases

DNASUi84343.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000296051; ENSP00000296051; ENSG00000163755. [Q969F9-1]
GeneIDi84343.
KEGGihsa:84343.
UCSCiuc003ewu.1. human. [Q969F9-1]

Organism-specific databases

CTDi84343.
GeneCardsiGC03P148847.
GeneReviewsiHPS3.
HGNCiHGNC:15597. HPS3.
HPAiHPA046281.
HPA052778.
MIMi606118. gene.
614072. phenotype.
neXtProtiNX_Q969F9.
Orphaneti231512. Hermansky-Pudlak syndrome without pulmonary fibrosis.
PharmGKBiPA29433.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiNOG69808.
GeneTreeiENSGT00390000015458.
HOGENOMiHOG000013119.
HOVERGENiHBG023715.
InParanoidiQ969F9.
OMAiVCALRIQ.
OrthoDBiEOG7NKKJF.
PhylomeDBiQ969F9.
TreeFamiTF324432.

Miscellaneous databases

ChiTaRSiHPS3. human.
GeneWikiiHPS3.
GenomeRNAii84343.
NextBioi74133.
PROiQ969F9.
SOURCEiSearch...

Gene expression databases

BgeeiQ969F9.
CleanExiHS_HPS3.
ExpressionAtlasiQ969F9. baseline and differential.
GenevestigatoriQ969F9.

Family and domain databases

InterProiIPR017216. HPS3.
IPR029438. HPS3_C.
IPR028167. HPS3_central_dom.
IPR029437. HPS3_N.
[Graphical view]
PfamiPF14763. HPS3_C. 1 hit.
PF14762. HPS3_Mid. 1 hit.
PF14761. HPS3_N. 1 hit.
[Graphical view]
PIRSFiPIRSF037473. BLOC-2_complex_Hps3. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Mutation of a new gene causes a unique form of Hermansky-Pudlak syndrome in a genetic isolate of central Puerto Rico."
    Anikster Y., Huizing M., White J.G., Shevchenko Y.O., Fitzpatrick D.L., Touchman J.W., Comptom J.G., Bale S.J., Swank R.T., Gahl W.A., Toro J.R.
    Nat. Genet. 28:376-380(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] (ISOFORM 1), INVOLVEMENT IN HPS3.
  2. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 199-1004 (ISOFORMS 1 AND 2).
    Tissue: Placenta, Small intestine and Tongue.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  4. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
    Tissue: Kidney and Lymph.
  5. "Hermansky-Pudlak syndrome type 3 in Ashkenazi Jews and other non-Puerto Rican patients with hypopigmentation and platelet storage-pool deficiency."
    Huizing M., Anikster Y., Fitzpatrick D.L., Jeong A.B., D'Souza M., Rausche M., Toro J.R., Kaiser-Kupfer M.I., White J.G., Gahl W.A.
    Am. J. Hum. Genet. 69:1022-1032(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: VARIANT HPS3 TRP-397.
  6. Cited for: VARIANT [LARGE SCALE ANALYSIS] GLN-397.

Entry informationi

Entry nameiHPS3_HUMAN
AccessioniPrimary (citable) accession number: Q969F9
Secondary accession number(s): A8K6G6
, Q8WTV6, Q96AP1, Q96MR3, Q9H608
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 10, 2002
Last sequence update: December 1, 2001
Last modified: March 4, 2015
This is version 118 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 3
    Human chromosome 3: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.