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Q96631

- RDRP_BBV

UniProt

Q96631 - RDRP_BBV

Protein

RNA-directed RNA polymerase

Gene
N/A
Organism
Black beetle virus (BBV)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 45 (01 Oct 2014)
      Sequence version 2 (16 Apr 2002)
      Previous versions | rss
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    Functioni

    RNA-dependent RNA polymerase which replicates the viral genome composed of 2 RNA segments, RNA1 AND RNA2.Curated

    Catalytic activityi

    Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).

    GO - Molecular functioni

    1. RNA-directed RNA polymerase activity Source: UniProtKB-KW

    Keywords - Molecular functioni

    Nucleotidyltransferase, RNA-directed RNA polymerase, Transferase

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    RNA-directed RNA polymerase (EC:2.7.7.48)
    Short name:
    RdRp
    Alternative name(s):
    RNA replicase
    Short name:
    Protein A
    OrganismiBlack beetle virus (BBV)
    Taxonomic identifieri12285 [NCBI]
    Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageNodaviridaeAlphanodavirus
    Virus hostiHeteronychus arator [TaxID: 295550]

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 998998RNA-directed RNA polymerasePRO_0000222444Add
    BLAST

    Structurei

    3D structure databases

    ProteinModelPortaliQ96631.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Compositional bias

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Compositional biasi739 – 7424Poly-Thr

    Sequence similaritiesi

    Belongs to the nodaviridae RNA polymerase family.Curated

    Family and domain databases

    InterProiIPR020237. RNA-dir_pol_C_nodavirus.
    [Graphical view]
    ProDomiPD029982. RNA-dir_pol_nodavirus. 1 hit.
    [Graphical view] [Entries sharing at least one domain]

    Sequencei

    Sequence statusi: Complete.

    Q96631-1 [UniParc]FASTAAdd to Basket

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    MTLKVILGEH QITRTELPVG IATVSGCGAV VYCISKFWGY GAIAPYPQSG    50
    GNRVTRALQR AVIDKTKTPI ETRFYPLDSL RTVTPKRAVD NGHAVSGAVR 100
    DAARRLIDES ITAVGGSKFE VNPNPNSSTG LRNHFHFAVG DLAQDFRNDT 150
    PADDAFIVGV DVDYYVTEPD VLLEHMRPVV LHTFNPKKVS GFDADSPFTI 200
    KNNLVEYKVS GGAAWVHPVW DWCEAGEFIA SRVRTSWKEW FLQLPLRMIG 250
    LEKVGYHKIH HCRPWTDCPD RALVYTIPQY VIWRFNWIDT ELHVRKLKRI 300
    EYQDETKPGW NRLEYVTDRN ELLVSIGREG EHAQITIEKE KLDMLSGLSA 350
    TQSVNVRLIG MGHKDPQYTS MIVQYYTGKK VVSPISPTVY KPTMPRVHWP 400
    VTSDADVPEV SARQYTLPIV SDCMMMPMIK RWETMSESIE RRVTFVANDK 450
    KPSDRIAKIA ETFVKLMNGP FKDLDPLSIE ETIERLNKPS QQLQLRAVFE 500
    MIGVEPRQLI ESFNKNEPGM KSSRIISGFP DILFILKVSR YTLAYSDIVL 550
    HAEHNEHWYY PGRNPTEIAD GVCEFVSECD AEVIETDFSN LDGRVSSWMQ 600
    RNIAQKAMVQ AFRPEYRDEI ISFMDTIINC SAKAKRFGFR YEPGVGVKSG 650
    SSTTTPHNTQ YNGCVEFTAL TFEHPDAEPE DLFRLIGPKC GDDGLSRAII 700
    QKSINRAAKC FGLELKVERY NPEIGLCFLS RVFVDPLATT TTIQDPLRTL 750
    RKLHLTTRDP TIPLADAACD RVEGHLCTDA LTPLISDYCK MVLRLYGPTA 800
    STEQVRNQRR SRNKEKPYWL TCDGSWPQHP QDAHLMKQVL IKRTAIDEDQ 850
    VDALIGRFAA MKDVWEKITH DSEESAAACT FDEDGVAPNS VDESLPMLND 900
    AKQTRANPGT SRPHSNGGGS SHGNELPRRT EQRAQGPRQP ARLPKQGKTN 950
    GKSDGNITAG ETQRGGIPRG KGPRGGKTNT RRTPPKAGAQ PQPSNNRK 998
    Length:998
    Mass (Da):112,197
    Last modified:April 16, 2002 - v2
    Checksum:iA57DA34AFE0A296B
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X02396 Genomic RNA. Translation: CAA26238.1.
    PIRiS78471. QQBBB1.
    RefSeqiYP_053043.1. NC_001411.2.

    Genome annotation databases

    GeneIDi956649.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X02396 Genomic RNA. Translation: CAA26238.1 .
    PIRi S78471. QQBBB1.
    RefSeqi YP_053043.1. NC_001411.2.

    3D structure databases

    ProteinModelPortali Q96631.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 956649.

    Family and domain databases

    InterProi IPR020237. RNA-dir_pol_C_nodavirus.
    [Graphical view ]
    ProDomi PD029982. RNA-dir_pol_nodavirus. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    ProtoNeti Search...

    Publicationsi

    1. "Structure of the black beetle virus genome and its functional implications."
      Dasmahapatra B., Dasgupta R., Ghosh A., Kaesberg P.
      J. Mol. Biol. 182:183-189(1985) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
    2. "Sequence of the black beetle virus subgenomic RNA and its location in the viral genome."
      Guarino L.A., Ghosh A., Dasmahapatra B., Dasgupta R., Kaesberg P.
      Virology 139:199-203(1984) [PubMed] [Europe PMC] [Abstract]
      Cited for: PRELIMINARY PARTIAL NUCLEOTIDE SEQUENCE.

    Entry informationi

    Entry nameiRDRP_BBV
    AccessioniPrimary (citable) accession number: Q96631
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: April 16, 2002
    Last sequence update: April 16, 2002
    Last modified: October 1, 2014
    This is version 45 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programViral Protein Annotation Program

    Miscellaneousi

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3