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Q96631

- RDRP_BBV

UniProt

Q96631 - RDRP_BBV

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Protein

RNA-directed RNA polymerase

Gene
N/A
Organism
Black beetle virus (BBV)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

RNA-dependent RNA polymerase which replicates the viral genome composed of 2 RNA segments, RNA1 AND RNA2.Curated

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).

GO - Molecular functioni

  1. RNA-directed RNA polymerase activity Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Nucleotidyltransferase, RNA-directed RNA polymerase, Transferase

Names & Taxonomyi

Protein namesi
Recommended name:
RNA-directed RNA polymerase (EC:2.7.7.48)
Short name:
RdRp
Alternative name(s):
RNA replicase
Short name:
Protein A
OrganismiBlack beetle virus (BBV)
Taxonomic identifieri12285 [NCBI]
Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageNodaviridaeAlphanodavirus
Virus hostiHeteronychus arator [TaxID: 295550]

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 998998RNA-directed RNA polymerasePRO_0000222444Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliQ96631.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi739 – 7424Poly-Thr

Sequence similaritiesi

Belongs to the nodaviridae RNA polymerase family.Curated

Family and domain databases

InterProiIPR020237. RNA-dir_pol_C_nodavirus.
[Graphical view]
ProDomiPD029982. RNA-dir_pol_nodavirus. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

Q96631-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTLKVILGEH QITRTELPVG IATVSGCGAV VYCISKFWGY GAIAPYPQSG
60 70 80 90 100
GNRVTRALQR AVIDKTKTPI ETRFYPLDSL RTVTPKRAVD NGHAVSGAVR
110 120 130 140 150
DAARRLIDES ITAVGGSKFE VNPNPNSSTG LRNHFHFAVG DLAQDFRNDT
160 170 180 190 200
PADDAFIVGV DVDYYVTEPD VLLEHMRPVV LHTFNPKKVS GFDADSPFTI
210 220 230 240 250
KNNLVEYKVS GGAAWVHPVW DWCEAGEFIA SRVRTSWKEW FLQLPLRMIG
260 270 280 290 300
LEKVGYHKIH HCRPWTDCPD RALVYTIPQY VIWRFNWIDT ELHVRKLKRI
310 320 330 340 350
EYQDETKPGW NRLEYVTDRN ELLVSIGREG EHAQITIEKE KLDMLSGLSA
360 370 380 390 400
TQSVNVRLIG MGHKDPQYTS MIVQYYTGKK VVSPISPTVY KPTMPRVHWP
410 420 430 440 450
VTSDADVPEV SARQYTLPIV SDCMMMPMIK RWETMSESIE RRVTFVANDK
460 470 480 490 500
KPSDRIAKIA ETFVKLMNGP FKDLDPLSIE ETIERLNKPS QQLQLRAVFE
510 520 530 540 550
MIGVEPRQLI ESFNKNEPGM KSSRIISGFP DILFILKVSR YTLAYSDIVL
560 570 580 590 600
HAEHNEHWYY PGRNPTEIAD GVCEFVSECD AEVIETDFSN LDGRVSSWMQ
610 620 630 640 650
RNIAQKAMVQ AFRPEYRDEI ISFMDTIINC SAKAKRFGFR YEPGVGVKSG
660 670 680 690 700
SSTTTPHNTQ YNGCVEFTAL TFEHPDAEPE DLFRLIGPKC GDDGLSRAII
710 720 730 740 750
QKSINRAAKC FGLELKVERY NPEIGLCFLS RVFVDPLATT TTIQDPLRTL
760 770 780 790 800
RKLHLTTRDP TIPLADAACD RVEGHLCTDA LTPLISDYCK MVLRLYGPTA
810 820 830 840 850
STEQVRNQRR SRNKEKPYWL TCDGSWPQHP QDAHLMKQVL IKRTAIDEDQ
860 870 880 890 900
VDALIGRFAA MKDVWEKITH DSEESAAACT FDEDGVAPNS VDESLPMLND
910 920 930 940 950
AKQTRANPGT SRPHSNGGGS SHGNELPRRT EQRAQGPRQP ARLPKQGKTN
960 970 980 990
GKSDGNITAG ETQRGGIPRG KGPRGGKTNT RRTPPKAGAQ PQPSNNRK
Length:998
Mass (Da):112,197
Last modified:April 16, 2002 - v2
Checksum:iA57DA34AFE0A296B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X02396 Genomic RNA. Translation: CAA26238.1.
PIRiS78471. QQBBB1.
RefSeqiYP_053043.1. NC_001411.2.

Genome annotation databases

GeneIDi956649.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X02396 Genomic RNA. Translation: CAA26238.1 .
PIRi S78471. QQBBB1.
RefSeqi YP_053043.1. NC_001411.2.

3D structure databases

ProteinModelPortali Q96631.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 956649.

Family and domain databases

InterProi IPR020237. RNA-dir_pol_C_nodavirus.
[Graphical view ]
ProDomi PD029982. RNA-dir_pol_nodavirus. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
ProtoNeti Search...

Publicationsi

  1. "Structure of the black beetle virus genome and its functional implications."
    Dasmahapatra B., Dasgupta R., Ghosh A., Kaesberg P.
    J. Mol. Biol. 182:183-189(1985) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
  2. "Sequence of the black beetle virus subgenomic RNA and its location in the viral genome."
    Guarino L.A., Ghosh A., Dasmahapatra B., Dasgupta R., Kaesberg P.
    Virology 139:199-203(1984) [PubMed] [Europe PMC] [Abstract]
    Cited for: PRELIMINARY PARTIAL NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiRDRP_BBV
AccessioniPrimary (citable) accession number: Q96631
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 16, 2002
Last sequence update: April 16, 2002
Last modified: October 1, 2014
This is version 45 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3