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Q96631 (RDRP_BBV) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 44. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
RNA-directed RNA polymerase

Short name=RdRp
EC=2.7.7.48
Alternative name(s):
RNA replicase
Short name=Protein A
OrganismBlack beetle virus (BBV)
Taxonomic identifier12285 [NCBI]
Taxonomic lineageVirusesssRNA positive-strand viruses, no DNA stageNodaviridaeAlphanodavirus
Virus hostHeteronychus arator [TaxID: 295550]

Protein attributes

Sequence length998 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

RNA-dependent RNA polymerase which replicates the viral genome composed of 2 RNA segments, RNA1 AND RNA2 Potential.

Catalytic activity

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).

Sequence similarities

Belongs to the nodaviridae RNA polymerase family.

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 998998RNA-directed RNA polymerase
PRO_0000222444

Regions

Compositional bias739 – 7424Poly-Thr

Sequences

Sequence LengthMass (Da)Tools
Q96631 [UniParc].

Last modified April 16, 2002. Version 2.
Checksum: A57DA34AFE0A296B

FASTA998112,197
        10         20         30         40         50         60 
MTLKVILGEH QITRTELPVG IATVSGCGAV VYCISKFWGY GAIAPYPQSG GNRVTRALQR 

        70         80         90        100        110        120 
AVIDKTKTPI ETRFYPLDSL RTVTPKRAVD NGHAVSGAVR DAARRLIDES ITAVGGSKFE 

       130        140        150        160        170        180 
VNPNPNSSTG LRNHFHFAVG DLAQDFRNDT PADDAFIVGV DVDYYVTEPD VLLEHMRPVV 

       190        200        210        220        230        240 
LHTFNPKKVS GFDADSPFTI KNNLVEYKVS GGAAWVHPVW DWCEAGEFIA SRVRTSWKEW 

       250        260        270        280        290        300 
FLQLPLRMIG LEKVGYHKIH HCRPWTDCPD RALVYTIPQY VIWRFNWIDT ELHVRKLKRI 

       310        320        330        340        350        360 
EYQDETKPGW NRLEYVTDRN ELLVSIGREG EHAQITIEKE KLDMLSGLSA TQSVNVRLIG 

       370        380        390        400        410        420 
MGHKDPQYTS MIVQYYTGKK VVSPISPTVY KPTMPRVHWP VTSDADVPEV SARQYTLPIV 

       430        440        450        460        470        480 
SDCMMMPMIK RWETMSESIE RRVTFVANDK KPSDRIAKIA ETFVKLMNGP FKDLDPLSIE 

       490        500        510        520        530        540 
ETIERLNKPS QQLQLRAVFE MIGVEPRQLI ESFNKNEPGM KSSRIISGFP DILFILKVSR 

       550        560        570        580        590        600 
YTLAYSDIVL HAEHNEHWYY PGRNPTEIAD GVCEFVSECD AEVIETDFSN LDGRVSSWMQ 

       610        620        630        640        650        660 
RNIAQKAMVQ AFRPEYRDEI ISFMDTIINC SAKAKRFGFR YEPGVGVKSG SSTTTPHNTQ 

       670        680        690        700        710        720 
YNGCVEFTAL TFEHPDAEPE DLFRLIGPKC GDDGLSRAII QKSINRAAKC FGLELKVERY 

       730        740        750        760        770        780 
NPEIGLCFLS RVFVDPLATT TTIQDPLRTL RKLHLTTRDP TIPLADAACD RVEGHLCTDA 

       790        800        810        820        830        840 
LTPLISDYCK MVLRLYGPTA STEQVRNQRR SRNKEKPYWL TCDGSWPQHP QDAHLMKQVL 

       850        860        870        880        890        900 
IKRTAIDEDQ VDALIGRFAA MKDVWEKITH DSEESAAACT FDEDGVAPNS VDESLPMLND 

       910        920        930        940        950        960 
AKQTRANPGT SRPHSNGGGS SHGNELPRRT EQRAQGPRQP ARLPKQGKTN GKSDGNITAG 

       970        980        990 
ETQRGGIPRG KGPRGGKTNT RRTPPKAGAQ PQPSNNRK 

« Hide

References

[1]"Structure of the black beetle virus genome and its functional implications."
Dasmahapatra B., Dasgupta R., Ghosh A., Kaesberg P.
J. Mol. Biol. 182:183-189(1985) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
[2]"Sequence of the black beetle virus subgenomic RNA and its location in the viral genome."
Guarino L.A., Ghosh A., Dasmahapatra B., Dasgupta R., Kaesberg P.
Virology 139:199-203(1984) [PubMed] [Europe PMC] [Abstract]
Cited for: PRELIMINARY PARTIAL NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
X02396 Genomic RNA. Translation: CAA26238.1.
PIRQQBBB1. S78471.
RefSeqYP_053043.1. NC_001411.2.

3D structure databases

ProteinModelPortalQ96631.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID956649.

Family and domain databases

InterProIPR020237. RNA-dir_pol_C_nodavirus.
[Graphical view]
ProDomPD029982. RNA-dir_pol_nodavirus. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetSearch...

Entry information

Entry nameRDRP_BBV
AccessionPrimary (citable) accession number: Q96631
Entry history
Integrated into UniProtKB/Swiss-Prot: April 16, 2002
Last sequence update: April 16, 2002
Last modified: April 16, 2014
This is version 44 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families