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Unreviewed, UniProtKB/TrEMBL Q96487 (Q96487_SOLLC)

Last modified April 14, 2009. Version 53. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information

Names and origin

Protein namesSubmitted name:
    Abscission polygalacturonase EMBL AAB09575.1
Submitted name:
    Polygalacturonase 2 EMBL AAC28904.1
    EC=3.2.1.15
Gene names
Name: TAPG2 EMBL AAB09575.1
OrganismSolanum lycopersicum (Tomato) (Lycopersicon esculentum) EMBL AAB09575.1
Taxonomic identifier4081 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonscore eudicotyledonsasteridslamiidsSolanalesSolanaceaeSolanoideaeSolaneaeSolanumLycopersicon

Protein attributes

Sequence length392 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at transcript level.

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 28 family. RuleBase RU000404V2

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 1818 Potential EMBL AAB09575.1
Chain19 – 392374unnamed EMBL AAB09575.1
PRO_5000145119

Sequences

Sequence LengthMass (Da)Tools
Q96487-1 [UniParc].

Last modified February 1, 1997. Version 1.
Checksum: 9224D150B108F050

FASTA39241,867
        10         20         30         40         50         60 
MSPLAIFFLF LINSSLAANT NIYDVQNYGA KSDGKTDSSK AFLNAWAAAC ASNTPSTINV 

        70         80         90        100        110        120 
PAGKYLIHNA NFNGQTCKSK AITMHIDGTL LAPSDYNVIG NEENWIKFEK VNALSIYSGT 

       130        140        150        160        170        180 
FDGQGASLWA CKNPNNKNCP DGTTALTFYN SNNIIMSGVT VQNSQKFQIL VDGCRNVKLQ 

       190        200        210        220        230        240 
GVKVSAPGNS PNTDGIHVKL SSGVSIINSH IGTGDDCISI GPGTSNLWIE GIACGPGHGI 

       250        260        270        280        290        300 
SIGSLGWKQQ ELGVQNVTVK TVTFSGTTNG VRVKTWARPS NGFVRNILFQ HIVMVNVKNP 

       310        320        330        340        350        360 
IIIDQNYCPN HESCPHQGSG IKISDITYQD IHGTSATKIA VKLDCSKTNP CSGITLEGVN 

       370        380        390 
LSYQNQQTEA SCVNARGRVS GLQKTTNCLL EN 

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References

[1]"Three different polygalacturonases are expressed in tomato leaf and flower abscission, each with a different temporal expression pattern."
Kalaitzis P., Solomos T., Tucker M.L.
Plant Physiol. 113:1303-1308(1997) [PubMed: 9112778] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Rutgers EMBL AAB09575.1.
Tissue: Leaf EMBL AAB09575.1.
[2]"Genomic organization of six tomato polygalacturonases and 5' upstream sequence identity with tap1 and win2 genes."
Hong S.B., Tucker M.L.
Mol. Gen. Genet. 258:479-487(1998) [PubMed: 9669329] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Rutgers EMBL AAC28904.1.
[3]Hong S.-B., Tucker M.L.
Submitted (APR-1997) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Rutgers EMBL AAC28904.1.

Cross-references

Sequence databases

U70480 mRNA. Translation: AAB09575.1.
AF001001 Genomic DNA. Translation: AAC28904.1.
UniGeneLes.3647

3D structure databases

ModBaseSearch...

Protein family/group databases

CAZyGH28. Glycoside Hydrolase Family 28.

Family and domain databases

InterProIPR000743. Glyco_hydro_28.
IPR006626. PbH1.
IPR012334. Pectin_lyas_fold.
IPR000408. Reg_chr_condens.
[Graphical view]
Gene3DG3DSA:2.160.20.10. Pectin_lyas_fold. 1 hit.
PfamPF00295. Glyco_hydro_28. 1 hit.
[Graphical view]
SMARTSM00710. PbH1. 7 hits.
[Graphical view]
PROSITEPS00502. POLYGALACTURONASE. 1 hit.
PS00626. RCC1_2. 1 hit. Uncertain.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ96487_SOLLC
AccessionPrimary (citable) accession number: Q96487
Entry history
Integrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: February 1, 1997
Last modified: April 14, 2009
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information