Unreviewed, UniProtKB/TrEMBL Q96487 (Q96487_SOLLC)

Names and origin

Protein names

Submitted name:
    Abscission polygalacturonase EMBL AAB09575.1
Submitted name:
    Polygalacturonase 2 EMBL AAC28904.1
    EC=3.2.1.15

Gene names

Name:

TAPG2 EMBL AAB09575.1

Organism

Solanum lycopersicum (Tomato) (Lycopersicon esculentum) EMBL AAB09575.1

Taxonomic identifier

4081 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › asterids › lamiids › Solanales › Solanaceae › Solanoideae › Solaneae › Solanum › Lycopersicon

Protein attributes

Sequence length	392 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Evidence at transcript level.

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 28 family. RuleBase RU000404V2

Ontologies

Keywords
Biological process	Cell wall biogenesis/degradation RuleBase RU000404V2
Domain	Signal
Molecular function	Glycosidase RuleBase RU000404V2 Spearmint SPM000743 Hydrolase
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro cell wall organization Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	polygalacturonase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 18	18	Potential EMBL AAB09575.1
	Chain	19 – 392	374	unnamed EMBL AAB09575.1		PRO_5000145119

Sequences

	Sequence		Length	Mass (Da)
	Q96487-1 [UniParc]. Last modified February 1, 1997. Version 1. Checksum: 9224D150B108F050	FASTA	392	41,867
	10 20 30 40 50 60 MSPLAIFFLF LINSSLAANT NIYDVQNYGA KSDGKTDSSK AFLNAWAAAC ASNTPSTINV 70 80 90 100 110 120 PAGKYLIHNA NFNGQTCKSK AITMHIDGTL LAPSDYNVIG NEENWIKFEK VNALSIYSGT 130 140 150 160 170 180 FDGQGASLWA CKNPNNKNCP DGTTALTFYN SNNIIMSGVT VQNSQKFQIL VDGCRNVKLQ 190 200 210 220 230 240 GVKVSAPGNS PNTDGIHVKL SSGVSIINSH IGTGDDCISI GPGTSNLWIE GIACGPGHGI 250 260 270 280 290 300 SIGSLGWKQQ ELGVQNVTVK TVTFSGTTNG VRVKTWARPS NGFVRNILFQ HIVMVNVKNP 310 320 330 340 350 360 IIIDQNYCPN HESCPHQGSG IKISDITYQD IHGTSATKIA VKLDCSKTNP CSGITLEGVN 370 380 390 LSYQNQQTEA SCVNARGRVS GLQKTTNCLL EN

References

[1]	"Three different polygalacturonases are expressed in tomato leaf and flower abscission, each with a different temporal expression pattern." Kalaitzis P., Solomos T., Tucker M.L. Plant Physiol. 113:1303-1308(1997) [PubMed: 9112778] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: Rutgers EMBL AAB09575.1. Tissue: Leaf EMBL AAB09575.1.
[2]	"Genomic organization of six tomato polygalacturonases and 5' upstream sequence identity with tap1 and win2 genes." Hong S.B., Tucker M.L. Mol. Gen. Genet. 258:479-487(1998) [PubMed: 9669329] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: Rutgers EMBL AAC28904.1.
[3]	Hong S.-B., Tucker M.L. Submitted (APR-1997) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: Rutgers EMBL AAC28904.1.

Cross-references

Sequence databases
EMBLGenBankDDBJ	U70480 mRNA. Translation: AAB09575.1. AF001001 Genomic DNA. Translation: AAC28904.1.
UniGene	Les.3647
3D structure databases
ModBase	Search...
Protein family/group databases
CAZy	GH28. Glycoside Hydrolase Family 28.
Family and domain databases
InterPro	IPR000743. Glyco_hydro_28. IPR006626. PbH1. IPR012334. Pectin_lyas_fold. IPR000408. Reg_chr_condens. [Graphical view]
Gene3D	G3DSA:2.160.20.10. Pectin_lyas_fold. 1 hit.
Pfam	PF00295. Glyco_hydro_28. 1 hit. [Graphical view]
SMART	SM00710. PbH1. 7 hits. [Graphical view]
PROSITE	PS00502. POLYGALACTURONASE. 1 hit. PS00626. RCC1_2. 1 hit. Uncertain. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q96487_SOLLC

Accession

Primary (citable) accession number: Q96487

Entry history

Integrated into UniProtKB/TrEMBL:	February 1, 1997
Last sequence update:	February 1, 1997
Last modified:	April 14, 2009
This is version 53 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)