Q96487 (Q96487_SOLLC) Unreviewed, UniProtKB/TrEMBL
Last modified
January 25, 2012.
Version 64.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize orderNames and origin
| Protein names | Submitted name: Abscission polygalacturonase EMBL AAB09575.1 | ||
| Gene names |
| ||
| Organism | Solanum lycopersicum (Tomato) (Lycopersicon esculentum) EMBL AAB09575.1 | ||
| Taxonomic identifier | 4081 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › asterids › lamiids › Solanales › Solanaceae › Solanoideae › Solaneae › Solanum › Lycopersicon |
Protein attributes
| Sequence length | 392 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at transcript level |
General annotation (Comments)
| Sequence similarities | Belongs to the glycosyl hydrolase 28 family. RuleBase RU000404 |
Ontologies
| Keywords | |
|---|---|
| Biological process | Cell wall biogenesis/degradation SAAS SAAS000743 RuleBase RU000404 |
| Cellular component | Secreted SAAS SAAS000743 |
| Domain | Signal EMBL AAB09575.1 |
| Molecular function | Glycosidase SAAS SAAS000743 RuleBase RU000404 EMBL AAC28904.1 Hydrolase |
| Gene Ontology (GO) | |
| Biological process | carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro cellular cell wall organizationInferred from electronic annotation. Source: UniProtKB-KW |
| Molecular function | polygalacturonase activity Inferred from electronic annotation. Source: EC |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | |||
Molecule processing | ||||||||
|---|---|---|---|---|---|---|---|---|
| Signal peptide | 1 – 18 | 18 | Potential EMBL AAB09575.1 | |||||
| Chain | 19 – 392 | 374 | unnamed EMBL AAB09575.1 | PRO_5000145119 | ||||
Sequences
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References
| [1] | "Genomic organization of six tomato polygalacturonases and 5' upstream sequence identity with tap1 and win2 genes." Hong S.B., Tucker M.L. Mol. Gen. Genet. 258:479-487(1998) [PubMed: 9669329] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: Rutgers EMBL AAC28904.1. |
| [2] | "Three different polygalacturonases are expressed in tomato leaf and flower abscission, each with a different temporal expression pattern." Kalaitzis P., Solomos T., Tucker M.L. Plant Physiol. 113:1303-1308(1997) [PubMed: 9112778] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: Rutgers EMBL AAB09575.1. Tissue: Leaf EMBL AAB09575.1. |
| [3] | Hong S.-B., Tucker M.L. Submitted (APR-1997) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: Rutgers EMBL AAC28904.1. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | U70480 mRNA. Translation: AAB09575.1. AF001001 Genomic DNA. Translation: AAC28904.1. |
| RefSeq | NP_001234533.1. NM_001247604.1. |
| UniGene | Les.3647. |
3D structure databases | |
| ProteinModelPortal | Q96487. |
| ModBase | Search... |
Protein family/group databases | |
| CAZy | GH28. Glycoside Hydrolase Family 28. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| GeneID | 544188. |
Family and domain databases | |
| InterPro | IPR000743. Glyco_hydro_28. IPR006626. PbH1. IPR012334. Pectin_lyas_fold. IPR011050. Pectin_lyase_fold/virulence. [Graphical view] |
| Gene3D | G3DSA:2.160.20.10. Pectin_lyas_fold. 1 hit. |
| Pfam | PF00295. Glyco_hydro_28. 1 hit. [Graphical view] |
| SMART | SM00710. PbH1. 7 hits. [Graphical view] |
| SUPFAM | SSF51126. Pectin_lyas_like. 1 hit. |
| PROSITE | PS00502. POLYGALACTURONASE. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | Q96487_SOLLC | ||||||||
| Accession | Primary (citable) accession number: Q96487 | ||||||||
| Entry history |
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| Entry status | Unreviewed (UniProtKB/TrEMBL) | ||||||||

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