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Q95YL3

- Q95YL3_CIOSA

UniProt

Q95YL3 - Q95YL3_CIOSA

Protein
Submitted name:

Cs-OTX protein

Gene

Cs-OTX

Organism
Ciona savignyi (Pacific transparent sea squirt)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 88 (01 Oct 2014)
      Sequence version 1 (01 Dec 2001)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. sequence-specific DNA binding Source: InterPro
    2. sequence-specific DNA binding transcription factor activity Source: InterPro

    Keywords - Ligandi

    DNA-bindingUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Cs-OTX proteinImported
    Submitted name:
    Uncharacterized proteinImported
    Gene namesi
    Name:Cs-OTXImported
    Synonyms:Csa.7466Imported
    OrganismiCiona savignyi (Pacific transparent sea squirt)
    Taxonomic identifieri51511 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataTunicataAscidiaceaEnterogonaPhlebobranchiaCionidaeCiona
    ProteomesiUP000007875: Unassembled WGS sequence, UP000007875: Unplaced

    Subcellular locationi

    Nucleus UniRule annotation

    GO - Cellular componenti

    1. nucleus Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    NucleusUniRule annotation

    Interactioni

    Protein-protein interaction databases

    STRINGi51511.ENSCSAVP00000016459.

    Structurei

    3D structure databases

    ProteinModelPortaliQ95YL3.
    SMRiQ95YL3. Positions 60-138.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Keywords - Domaini

    HomeoboxUniRule annotation

    Phylogenomic databases

    eggNOGiNOG245767.
    GeneTreeiENSGT00750000117284.
    HOGENOMiHOG000202001.
    HOVERGENiHBG004028.
    InParanoidiQ95YL3.
    OMAiGTMEASY.
    OrthoDBiEOG74J98P.
    TreeFamiTF351179.

    Family and domain databases

    Gene3Di1.10.10.60. 1 hit.
    InterProiIPR017970. Homeobox_CS.
    IPR001356. Homeobox_dom.
    IPR009057. Homeodomain-like.
    [Graphical view]
    PfamiPF00046. Homeobox. 1 hit.
    [Graphical view]
    SMARTiSM00389. HOX. 1 hit.
    [Graphical view]
    SUPFAMiSSF46689. SSF46689. 1 hit.
    PROSITEiPS00027. HOMEOBOX_1. 1 hit.
    PS50071. HOMEOBOX_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q95YL3-1 [UniParc]FASTAAdd to Basket

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    MSYLKSPHYA MNGLGLGHDM NLLHPTVTYP GDSAACYFQR IQGMHQGTKN    50
    MQFAAPPVYS SSRKQRRERT TFTRAQLDIL EALFGKTRYP DIFMREEVAL 100
    KINLPESRVQ VWFKNRRAKC RQQVQQQQQK QKSGSGSGSS SSANNSSGSS 150
    SGSTNSNNNS SSSASKKKSP PTTPTPTATG PAASTSPFQQ LTAPPAHQPL 200
    AQSSSPPLPS SPVSSNGQIG PSVTPSELMG SSGAPLNHQG SHGAHSGMVH 250
    TGSSSNIWSP ASVSPGASSD GASNVPGIGY SGALVASNNS PYMAAAAAVA 300
    HAAHSNYSAT SNAQVTSGGY PQNYHTSHSY FGTMEASYLP SVPFPGAAPG 350
    CGMGDMSMSG QQSASQLGHH GVGQAHSAPH HQFMPQSYPY HHATSGVTPT 400
    YPTVSECLDY KDQTQAWKFQ VL 422
    Length:422
    Mass (Da):44,376
    Last modified:December 1, 2001 - v1
    Checksum:i617848FF97CDC896
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB057732 mRNA. Translation: BAB68341.1.

    Genome annotation databases

    EnsembliENSCSAVT00000016640; ENSCSAVP00000016459; ENSCSAVG00000009682.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB057732 mRNA. Translation: BAB68341.1 .

    3D structure databases

    ProteinModelPortali Q95YL3.
    SMRi Q95YL3. Positions 60-138.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 51511.ENSCSAVP00000016459.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSCSAVT00000016640 ; ENSCSAVP00000016459 ; ENSCSAVG00000009682 .

    Phylogenomic databases

    eggNOGi NOG245767.
    GeneTreei ENSGT00750000117284.
    HOGENOMi HOG000202001.
    HOVERGENi HBG004028.
    InParanoidi Q95YL3.
    OMAi GTMEASY.
    OrthoDBi EOG74J98P.
    TreeFami TF351179.

    Family and domain databases

    Gene3Di 1.10.10.60. 1 hit.
    InterProi IPR017970. Homeobox_CS.
    IPR001356. Homeobox_dom.
    IPR009057. Homeodomain-like.
    [Graphical view ]
    Pfami PF00046. Homeobox. 1 hit.
    [Graphical view ]
    SMARTi SM00389. HOX. 1 hit.
    [Graphical view ]
    SUPFAMi SSF46689. SSF46689. 1 hit.
    PROSITEi PS00027. HOMEOBOX_1. 1 hit.
    PS50071. HOMEOBOX_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Early embryonic expression of a LIM-homeobox gene Cs-lhx3 is downstream of beta-catenin and responsible for the endoderm differentiation in Ciona savignyi embryos."
      Satou Y., Imai K.S., Satoh N.
      Development 128:3559-3570(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
    2. Birren B., Nusbaum C., Abebe A., Abouelleil A., Adekoya E., Ait-zahra M., Allen N., Allen T., An P., Anderson M., Anderson S., Arachchi H., Armbruster J., Bachantsang P., Baldwin J., Barry A., Bayul T., Blitshsteyn B.
      , Bloom T., Blye J., Boguslavskiy L., Borowsky M., Boukhgalter B., Brunache A., Butler J., Calixte N., Calvo S., Camarata J., Campo K., Chang J., Cheshatsang Y., Citroen M., Collymore A., Considine T., Cook A., Cooke P., Corum B., Cuomo C., David R., Dawoe T., Degray S., Dodge S., Dooley K., Dorje P., Dorjee K., Dorris L., Duffey N., Dupes A., Elkins T., Engels R., Erickson J., Farina A., Faro S., Ferreira P., Fischer H., Fitzgerald M., Foley K., Gage D., Galagan J., Gearin G., Gnerre S., Gnirke A., Goyette A., Graham J., Grandbois E., Gyaltsen K., Hafez N., Hagopian D., Hagos B., Hall J., Hatcher B., Heller A., Higgins H., Honan T., Horn A., Houde N., Hughes L., Hulme W., Husby E., Iliev I., Jaffe D., Jones C., Kamal M., Kamat A., Kamvysselis M., Karlsson E., Kells C., Kieu A., Kisner P., Kodira C., Kulbokas E., Labutti K., Lama D., Landers T., Leger J., Levine S., Lewis D., Lewis T., Lindblad-toh K., Liu X., Lokyitsang T., Lokyitsang Y., Lucien O., Lui A., Ma L.J., Mabbitt R., Macdonald J., Maclean C., Major J., Manning J., Marabella R., Maru K., Matthews C., Mauceli E., Mccarthy M., Mcdonough S., Mcghee T., Meldrim J., Meneus L., Mesirov J., Mihalev A., Mihova T., Mikkelsen T., Mlenga V., Moru K., Mozes J., Mulrain L., Munson G., Naylor J., Newes C., Nguyen C., Nguyen N., Nguyen T., Nicol R., Nielsen C., Nizzari M., Norbu C., Norbu N., O'donnell P., Okoawo O., O'leary S., Omotosho B., O'neill K., Osman S., Parker S., Perrin D., Phunkhang P., Piqani B., Purcell S., Rachupka T., Ramasamy U., Rameau R., Ray V., Raymond C., Retta R., Richardson S., Rise C., Rodriguez J., Rogers J., Rogov P., Rutman M., Schupbach R., Seaman C., Settipalli S., Sharpe T., Sheridan J., Sherpa N., Shi J., Smirnov S., Smith C., Sougnez C., Spencer B., Stalker J., Stange-thomann N., Stavropoulos S., Stetson K., Stone C., Stone S., Stubbs M., Talamas J., Tchuinga P., Tenzing P., Tesfaye S., Theodore J., Thoulutsang Y., Topham K., Towey S., Tsamla T., Tsomo N., Vallee D., Vassiliev H., Venkataraman V., Vinson J., Vo A., Wade C., Wang S., Wangchuk T., Wangdi T., Whittaker C., Wilkinson J., Wu Y., Wyman D., Yadav S., Yang S., Yang X., Yeager S., Yee E., Young G., Zainoun J., Zembeck L., Zimmer A., Zody M., Lander E.
      Submitted (AUG-2003) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    3. Ensembl
      Submitted (FEB-2012) to UniProtKB
      Cited for: IDENTIFICATION.

    Entry informationi

    Entry nameiQ95YL3_CIOSA
    AccessioniPrimary (citable) accession number: Q95YL3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: December 1, 2001
    Last sequence update: December 1, 2001
    Last modified: October 1, 2014
    This is version 88 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3