SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Q95YL3

- Q95YL3_CIOSA

UniProt

Q95YL3 - Q95YL3_CIOSA

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name: Cs-OTX protein
Gene
Cs-OTX, Csa.7466
Organism
Ciona savignyi (Pacific transparent sea squirt)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. sequence-specific DNA binding Source: InterPro
  2. sequence-specific DNA binding transcription factor activity Source: InterPro
Complete GO annotation...

Keywords - Ligandi

DNA-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Cs-OTX proteinImported
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:Cs-OTXImported
Synonyms:Csa.7466Imported
OrganismiCiona savignyi (Pacific transparent sea squirt)
Taxonomic identifieri51511 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataTunicataAscidiaceaEnterogonaPhlebobranchiaCionidaeCiona
ProteomesiUP000007875: Unassembled WGS sequence, UP000007875: Unplaced

Subcellular locationi

Nucleus By similarity UniRule annotation

GO - Cellular componenti

  1. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi51511.ENSCSAVP00000016459.

Structurei

3D structure databases

ProteinModelPortaliQ95YL3.
SMRiQ95YL3. Positions 60-138.

Family & Domainsi

Keywords - Domaini

HomeoboxUniRule annotation

Phylogenomic databases

eggNOGiNOG245767.
GeneTreeiENSGT00750000117284.
HOGENOMiHOG000202001.
HOVERGENiHBG004028.
InParanoidiQ95YL3.
OMAiGTMEASY.
OrthoDBiEOG74J98P.
TreeFamiTF351179.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR009057. Homeodomain-like.
[Graphical view]
PfamiPF00046. Homeobox. 1 hit.
[Graphical view]
SMARTiSM00389. HOX. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q95YL3-1 [UniParc]FASTAAdd to Basket

« Hide

MSYLKSPHYA MNGLGLGHDM NLLHPTVTYP GDSAACYFQR IQGMHQGTKN    50
MQFAAPPVYS SSRKQRRERT TFTRAQLDIL EALFGKTRYP DIFMREEVAL 100
KINLPESRVQ VWFKNRRAKC RQQVQQQQQK QKSGSGSGSS SSANNSSGSS 150
SGSTNSNNNS SSSASKKKSP PTTPTPTATG PAASTSPFQQ LTAPPAHQPL 200
AQSSSPPLPS SPVSSNGQIG PSVTPSELMG SSGAPLNHQG SHGAHSGMVH 250
TGSSSNIWSP ASVSPGASSD GASNVPGIGY SGALVASNNS PYMAAAAAVA 300
HAAHSNYSAT SNAQVTSGGY PQNYHTSHSY FGTMEASYLP SVPFPGAAPG 350
CGMGDMSMSG QQSASQLGHH GVGQAHSAPH HQFMPQSYPY HHATSGVTPT 400
YPTVSECLDY KDQTQAWKFQ VL 422
Length:422
Mass (Da):44,376
Last modified:December 1, 2001 - v1
Checksum:i617848FF97CDC896
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB057732 mRNA. Translation: BAB68341.1.

Genome annotation databases

EnsembliENSCSAVT00000016640; ENSCSAVP00000016459; ENSCSAVG00000009682.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB057732 mRNA. Translation: BAB68341.1 .

3D structure databases

ProteinModelPortali Q95YL3.
SMRi Q95YL3. Positions 60-138.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 51511.ENSCSAVP00000016459.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSCSAVT00000016640 ; ENSCSAVP00000016459 ; ENSCSAVG00000009682 .

Phylogenomic databases

eggNOGi NOG245767.
GeneTreei ENSGT00750000117284.
HOGENOMi HOG000202001.
HOVERGENi HBG004028.
InParanoidi Q95YL3.
OMAi GTMEASY.
OrthoDBi EOG74J98P.
TreeFami TF351179.

Family and domain databases

Gene3Di 1.10.10.60. 1 hit.
InterProi IPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR009057. Homeodomain-like.
[Graphical view ]
Pfami PF00046. Homeobox. 1 hit.
[Graphical view ]
SMARTi SM00389. HOX. 1 hit.
[Graphical view ]
SUPFAMi SSF46689. SSF46689. 1 hit.
PROSITEi PS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Early embryonic expression of a LIM-homeobox gene Cs-lhx3 is downstream of beta-catenin and responsible for the endoderm differentiation in Ciona savignyi embryos."
    Satou Y., Imai K.S., Satoh N.
    Development 128:3559-3570(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  2. Birren B., Nusbaum C., Abebe A., Abouelleil A., Adekoya E., Ait-zahra M., Allen N., Allen T., An P., Anderson M., Anderson S., Arachchi H., Armbruster J., Bachantsang P., Baldwin J., Barry A., Bayul T., Blitshsteyn B.
    , Bloom T., Blye J., Boguslavskiy L., Borowsky M., Boukhgalter B., Brunache A., Butler J., Calixte N., Calvo S., Camarata J., Campo K., Chang J., Cheshatsang Y., Citroen M., Collymore A., Considine T., Cook A., Cooke P., Corum B., Cuomo C., David R., Dawoe T., Degray S., Dodge S., Dooley K., Dorje P., Dorjee K., Dorris L., Duffey N., Dupes A., Elkins T., Engels R., Erickson J., Farina A., Faro S., Ferreira P., Fischer H., Fitzgerald M., Foley K., Gage D., Galagan J., Gearin G., Gnerre S., Gnirke A., Goyette A., Graham J., Grandbois E., Gyaltsen K., Hafez N., Hagopian D., Hagos B., Hall J., Hatcher B., Heller A., Higgins H., Honan T., Horn A., Houde N., Hughes L., Hulme W., Husby E., Iliev I., Jaffe D., Jones C., Kamal M., Kamat A., Kamvysselis M., Karlsson E., Kells C., Kieu A., Kisner P., Kodira C., Kulbokas E., Labutti K., Lama D., Landers T., Leger J., Levine S., Lewis D., Lewis T., Lindblad-toh K., Liu X., Lokyitsang T., Lokyitsang Y., Lucien O., Lui A., Ma L.J., Mabbitt R., Macdonald J., Maclean C., Major J., Manning J., Marabella R., Maru K., Matthews C., Mauceli E., Mccarthy M., Mcdonough S., Mcghee T., Meldrim J., Meneus L., Mesirov J., Mihalev A., Mihova T., Mikkelsen T., Mlenga V., Moru K., Mozes J., Mulrain L., Munson G., Naylor J., Newes C., Nguyen C., Nguyen N., Nguyen T., Nicol R., Nielsen C., Nizzari M., Norbu C., Norbu N., O'donnell P., Okoawo O., O'leary S., Omotosho B., O'neill K., Osman S., Parker S., Perrin D., Phunkhang P., Piqani B., Purcell S., Rachupka T., Ramasamy U., Rameau R., Ray V., Raymond C., Retta R., Richardson S., Rise C., Rodriguez J., Rogers J., Rogov P., Rutman M., Schupbach R., Seaman C., Settipalli S., Sharpe T., Sheridan J., Sherpa N., Shi J., Smirnov S., Smith C., Sougnez C., Spencer B., Stalker J., Stange-thomann N., Stavropoulos S., Stetson K., Stone C., Stone S., Stubbs M., Talamas J., Tchuinga P., Tenzing P., Tesfaye S., Theodore J., Thoulutsang Y., Topham K., Towey S., Tsamla T., Tsomo N., Vallee D., Vassiliev H., Venkataraman V., Vinson J., Vo A., Wade C., Wang S., Wangchuk T., Wangdi T., Whittaker C., Wilkinson J., Wu Y., Wyman D., Yadav S., Yang S., Yang X., Yeager S., Yee E., Young G., Zainoun J., Zembeck L., Zimmer A., Zody M., Lander E.
    Submitted (AUG-2003) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiQ95YL3_CIOSA
AccessioniPrimary (citable) accession number: Q95YL3
Entry historyi
Integrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: December 1, 2001
Last modified: June 11, 2014
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

Similar proteinsi