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Protein
Submitted name:

Cs-OTX protein

Gene

Cs-OTX

Organism
Ciona savignyi (Pacific transparent sea squirt)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. sequence-specific DNA binding Source: InterPro

GO - Biological processi

  1. regulation of transcription, DNA-templated Source: InterPro
Complete GO annotation...

Keywords - Ligandi

DNA-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Cs-OTX proteinImported
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:Cs-OTXImported
Synonyms:Csa.7466Imported
OrganismiCiona savignyi (Pacific transparent sea squirt)
Taxonomic identifieri51511 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataTunicataAscidiaceaEnterogonaPhlebobranchiaCionidaeCiona
ProteomesiUP000007875 Componenti: Unplaced

Subcellular locationi

Nucleus UniRule annotation

GO - Cellular componenti

  1. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi51511.ENSCSAVP00000016459.

Structurei

3D structure databases

ProteinModelPortaliQ95YL3.
SMRiQ95YL3. Positions 60-138.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

HomeoboxUniRule annotation

Phylogenomic databases

eggNOGiNOG245767.
GeneTreeiENSGT00760000118908.
HOGENOMiHOG000202001.
HOVERGENiHBG004028.
InParanoidiQ95YL3.
OMAiSSNIWSP.
OrthoDBiEOG74J98P.
TreeFamiTF351179.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR009057. Homeodomain-like.
[Graphical view]
PfamiPF00046. Homeobox. 1 hit.
[Graphical view]
SMARTiSM00389. HOX. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q95YL3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSYLKSPHYA MNGLGLGHDM NLLHPTVTYP GDSAACYFQR IQGMHQGTKN
60 70 80 90 100
MQFAAPPVYS SSRKQRRERT TFTRAQLDIL EALFGKTRYP DIFMREEVAL
110 120 130 140 150
KINLPESRVQ VWFKNRRAKC RQQVQQQQQK QKSGSGSGSS SSANNSSGSS
160 170 180 190 200
SGSTNSNNNS SSSASKKKSP PTTPTPTATG PAASTSPFQQ LTAPPAHQPL
210 220 230 240 250
AQSSSPPLPS SPVSSNGQIG PSVTPSELMG SSGAPLNHQG SHGAHSGMVH
260 270 280 290 300
TGSSSNIWSP ASVSPGASSD GASNVPGIGY SGALVASNNS PYMAAAAAVA
310 320 330 340 350
HAAHSNYSAT SNAQVTSGGY PQNYHTSHSY FGTMEASYLP SVPFPGAAPG
360 370 380 390 400
CGMGDMSMSG QQSASQLGHH GVGQAHSAPH HQFMPQSYPY HHATSGVTPT
410 420
YPTVSECLDY KDQTQAWKFQ VL
Length:422
Mass (Da):44,376
Last modified:November 30, 2001 - v1
Checksum:i617848FF97CDC896
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB057732 mRNA. Translation: BAB68341.1.

Genome annotation databases

EnsembliENSCSAVT00000016640; ENSCSAVP00000016459; ENSCSAVG00000009682.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB057732 mRNA. Translation: BAB68341.1.

3D structure databases

ProteinModelPortaliQ95YL3.
SMRiQ95YL3. Positions 60-138.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi51511.ENSCSAVP00000016459.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSCSAVT00000016640; ENSCSAVP00000016459; ENSCSAVG00000009682.

Phylogenomic databases

eggNOGiNOG245767.
GeneTreeiENSGT00760000118908.
HOGENOMiHOG000202001.
HOVERGENiHBG004028.
InParanoidiQ95YL3.
OMAiSSNIWSP.
OrthoDBiEOG74J98P.
TreeFamiTF351179.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR009057. Homeodomain-like.
[Graphical view]
PfamiPF00046. Homeobox. 1 hit.
[Graphical view]
SMARTiSM00389. HOX. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Early embryonic expression of a LIM-homeobox gene Cs-lhx3 is downstream of beta-catenin and responsible for the endoderm differentiation in Ciona savignyi embryos."
    Satou Y., Imai K.S., Satoh N.
    Development 128:3559-3570(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  2. Birren B., Nusbaum C., Abebe A., Abouelleil A., Adekoya E., Ait-zahra M., Allen N., Allen T., An P., Anderson M., Anderson S., Arachchi H., Armbruster J., Bachantsang P., Baldwin J., Barry A., Bayul T., Blitshsteyn B.
    , Bloom T., Blye J., Boguslavskiy L., Borowsky M., Boukhgalter B., Brunache A., Butler J., Calixte N., Calvo S., Camarata J., Campo K., Chang J., Cheshatsang Y., Citroen M., Collymore A., Considine T., Cook A., Cooke P., Corum B., Cuomo C., David R., Dawoe T., Degray S., Dodge S., Dooley K., Dorje P., Dorjee K., Dorris L., Duffey N., Dupes A., Elkins T., Engels R., Erickson J., Farina A., Faro S., Ferreira P., Fischer H., Fitzgerald M., Foley K., Gage D., Galagan J., Gearin G., Gnerre S., Gnirke A., Goyette A., Graham J., Grandbois E., Gyaltsen K., Hafez N., Hagopian D., Hagos B., Hall J., Hatcher B., Heller A., Higgins H., Honan T., Horn A., Houde N., Hughes L., Hulme W., Husby E., Iliev I., Jaffe D., Jones C., Kamal M., Kamat A., Kamvysselis M., Karlsson E., Kells C., Kieu A., Kisner P., Kodira C., Kulbokas E., Labutti K., Lama D., Landers T., Leger J., Levine S., Lewis D., Lewis T., Lindblad-toh K., Liu X., Lokyitsang T., Lokyitsang Y., Lucien O., Lui A., Ma L.J., Mabbitt R., Macdonald J., Maclean C., Major J., Manning J., Marabella R., Maru K., Matthews C., Mauceli E., Mccarthy M., Mcdonough S., Mcghee T., Meldrim J., Meneus L., Mesirov J., Mihalev A., Mihova T., Mikkelsen T., Mlenga V., Moru K., Mozes J., Mulrain L., Munson G., Naylor J., Newes C., Nguyen C., Nguyen N., Nguyen T., Nicol R., Nielsen C., Nizzari M., Norbu C., Norbu N., O'donnell P., Okoawo O., O'leary S., Omotosho B., O'neill K., Osman S., Parker S., Perrin D., Phunkhang P., Piqani B., Purcell S., Rachupka T., Ramasamy U., Rameau R., Ray V., Raymond C., Retta R., Richardson S., Rise C., Rodriguez J., Rogers J., Rogov P., Rutman M., Schupbach R., Seaman C., Settipalli S., Sharpe T., Sheridan J., Sherpa N., Shi J., Smirnov S., Smith C., Sougnez C., Spencer B., Stalker J., Stange-thomann N., Stavropoulos S., Stetson K., Stone C., Stone S., Stubbs M., Talamas J., Tchuinga P., Tenzing P., Tesfaye S., Theodore J., Thoulutsang Y., Topham K., Towey S., Tsamla T., Tsomo N., Vallee D., Vassiliev H., Venkataraman V., Vinson J., Vo A., Wade C., Wang S., Wangchuk T., Wangdi T., Whittaker C., Wilkinson J., Wu Y., Wyman D., Yadav S., Yang S., Yang X., Yeager S., Yee E., Young G., Zainoun J., Zembeck L., Zimmer A., Zody M., Lander E.
    Submitted (JUL-2003) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. Ensembl
    Submitted (JAN-2012) to UniProtKB
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiQ95YL3_CIOSA
AccessioniPrimary (citable) accession number: Q95YL3
Entry historyi
Integrated into UniProtKB/TrEMBL: November 30, 2001
Last sequence update: November 30, 2001
Last modified: March 31, 2015
This is version 92 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.