Q95Y90 (RL9_CAEEL) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
60S ribosomal protein L9

Gene names

Name:	rpl-9
ORF Names:	R13A5.8

Organism

Caenorhabditis elegans

Taxonomic identifier

6239 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Nematoda › Chromadorea › Rhabditida › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis

Protein attributes

Sequence length	189 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein L6P family.

Ontologies

Keywords
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	body morphogenesis Inferred from mutant phenotype. Source: WormBase determination of adult lifespan Inferred from mutant phenotype. Source: WormBase embryo development ending in birth or egg hatching Inferred from mutant phenotype. Source: WormBase growth Inferred from mutant phenotype. Source: WormBase nematode larval development Inferred from mutant phenotype. Source: WormBase reproduction Inferred from mutant phenotype. Source: WormBase response to heat Inferred from mutant phenotype. Source: WormBase translation Inferred from electronic annotation. Source: InterPro
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	rRNA binding Inferred from electronic annotation. Source: InterPro structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Binary interactions

With	Entry	#Exp.	IntAct	Notes
F39H12.1	Q20198	1	EBI-312900,EBI-316812
ndc-80	Q17635	1	EBI-312900,EBI-314429

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 189	189	60S ribosomal protein L9		PRO_0000131104

Sequences

	Sequence		Length	Mass (Da)
	Q95Y90 [UniParc]. Last modified December 1, 2001. Version 1. Checksum: BAF0BDAB68074FF8	FASTA	189	21,508
	10 20 30 40 50 60 MKLIESNDTV VFPEGVTFTV KNRIVHVTGP RGTIRKDFRH LHMEMERIGK STLRVRKWFG 70 80 90 100 110 120 VRKELAAIRT VCSHIKNMIK GVTVGFRYKM RSVYAHFPIN VTLQDGNRTV EIRNFLGEKI 130 140 150 160 170 180 VRRVPLPEGV IATISTAQKD EIVVEGNDVQ FVSQAAARIQ QSTAVKEKDI RKFLDGIYVS EKTTIVPTD

References

[1]	"Genome sequence of the nematode C. elegans: a platform for investigating biology." The C. elegans sequencing consortium Science 282:2012-2018(1998) [PubMed: 9851916] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Bristol N2.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	FO080424 Genomic DNA. Translation: CCD63603.1.
RefSeq	NP_498660.1. NM_066259.4.
UniGene	Cel.17183.
3D structure databases
ProteinModelPortal	Q95Y90.
SMR	Q95Y90. Positions 10-182.
ModBase	Search...
Protein-protein interaction databases
DIP	DIP-26431N.
IntAct	Q95Y90. 4 interactions.
MINT	MINT-214155.
STRING	Q95Y90.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblMetazoa	R13A5.8.1; R13A5.8.1; R13A5.8. R13A5.8.2; R13A5.8.2; R13A5.8.
GeneID	176071.
KEGG	cel:R13A5.8.
UCSC	R13A5.8.1. c. elegans.
Organism-specific databases
CTD	176071.
WormBase	R13A5.8; CE01380; WBGene00004420; rpl-9.
Phylogenomic databases
eggNOG	meNOG09380.
GeneTree	EMGT00050000016729.
HOGENOM	HBG606796.
InParanoid	Q95Y90.
OMA	VCSHIEN.
PhylomeDB	Q95Y90.
Gene expression databases
ArrayExpress	Q95Y90.
Family and domain databases
InterPro	IPR000702. Ribosomal_L6. IPR020040. Ribosomal_L6_a/b-dom. IPR002359. Ribosomal_L6_CS2. [Graphical view]
Gene3D	G3DSA:3.90.930.12. Ribosomal_L6. 2 hits.
KO	K02940.
PANTHER	PTHR11655. Ribosomal_L6. 1 hit.
Pfam	PF00347. Ribosomal_L6. 2 hits. [Graphical view]
PIRSF	PIRSF002162. Ribosomal_L6. 1 hit.
SUPFAM	SSF56053. Ribosomal_L6. 2 hits.
PROSITE	PS00700. RIBOSOMAL_L6_2. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	890984.

Entry information

Entry name

RL9_CAEEL

Accession

Primary (citable) accession number: Q95Y90

Entry history

Integrated into UniProtKB/Swiss-Prot:	July 11, 2002
Last sequence update:	December 1, 2001
Last modified:	December 14, 2011
This is version 67 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Caenorhabditis annotation project