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Protein

60S ribosomal protein L9

Gene

rpl-9

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

  • cytoplasmic translation Source: GO_Central
  • determination of adult lifespan Source: WormBase

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L9
Gene namesi
Name:rpl-9
ORF Names:R13A5.8
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome III

Organism-specific databases

WormBaseiR13A5.8; CE01380; WBGene00004420; rpl-9.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001311041 – 18960S ribosomal protein L9Add BLAST189

Proteomic databases

EPDiQ95Y90.
PaxDbiQ95Y90.
PeptideAtlasiQ95Y90.
PRIDEiQ95Y90.

Expressioni

Gene expression databases

BgeeiWBGene00004420.

Interactioni

Protein-protein interaction databases

BioGridi41279. 7 interactors.
DIPiDIP-26431N.
IntActiQ95Y90. 4 interactors.
MINTiMINT-214155.
STRINGi6239.R13A5.8.1.

Structurei

3D structure databases

ProteinModelPortaliQ95Y90.
SMRiQ95Y90.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3255. Eukaryota.
COG0097. LUCA.
GeneTreeiENSGT00390000015224.
HOGENOMiHOG000039905.
InParanoidiQ95Y90.
KOiK02940.
OMAiWQGGRKH.
OrthoDBiEOG091G0R6Z.
PhylomeDBiQ95Y90.

Family and domain databases

Gene3Di3.90.930.12. 2 hits.
InterProiView protein in InterPro
IPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR002359. Ribosomal_L6_CS2.
PANTHERiPTHR11655. PTHR11655. 1 hit.
PfamiView protein in Pfam
PF00347. Ribosomal_L6. 2 hits.
PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
SUPFAMiSSF56053. SSF56053. 2 hits.
PROSITEiView protein in PROSITE
PS00700. RIBOSOMAL_L6_2. 1 hit.

Sequencei

Sequence statusi: Complete.

Q95Y90-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLIESNDTV VFPEGVTFTV KNRIVHVTGP RGTIRKDFRH LHMEMERIGK
60 70 80 90 100
STLRVRKWFG VRKELAAIRT VCSHIKNMIK GVTVGFRYKM RSVYAHFPIN
110 120 130 140 150
VTLQDGNRTV EIRNFLGEKI VRRVPLPEGV IATISTAQKD EIVVEGNDVQ
160 170 180
FVSQAAARIQ QSTAVKEKDI RKFLDGIYVS EKTTIVPTD
Length:189
Mass (Da):21,508
Last modified:December 1, 2001 - v1
Checksum:iBAF0BDAB68074FF8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO080424 Genomic DNA. Translation: CCD63603.1.
RefSeqiNP_498660.1. NM_066259.5.
UniGeneiCel.17183.

Genome annotation databases

EnsemblMetazoaiR13A5.8; R13A5.8; WBGene00004420.
GeneIDi176071.
KEGGicel:CELE_R13A5.8.
UCSCiR13A5.8.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO080424 Genomic DNA. Translation: CCD63603.1.
RefSeqiNP_498660.1. NM_066259.5.
UniGeneiCel.17183.

3D structure databases

ProteinModelPortaliQ95Y90.
SMRiQ95Y90.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi41279. 7 interactors.
DIPiDIP-26431N.
IntActiQ95Y90. 4 interactors.
MINTiMINT-214155.
STRINGi6239.R13A5.8.1.

Proteomic databases

EPDiQ95Y90.
PaxDbiQ95Y90.
PeptideAtlasiQ95Y90.
PRIDEiQ95Y90.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiR13A5.8; R13A5.8; WBGene00004420.
GeneIDi176071.
KEGGicel:CELE_R13A5.8.
UCSCiR13A5.8.1. c. elegans.

Organism-specific databases

CTDi176071.
WormBaseiR13A5.8; CE01380; WBGene00004420; rpl-9.

Phylogenomic databases

eggNOGiKOG3255. Eukaryota.
COG0097. LUCA.
GeneTreeiENSGT00390000015224.
HOGENOMiHOG000039905.
InParanoidiQ95Y90.
KOiK02940.
OMAiWQGGRKH.
OrthoDBiEOG091G0R6Z.
PhylomeDBiQ95Y90.

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiPR:Q95Y90.

Gene expression databases

BgeeiWBGene00004420.

Family and domain databases

Gene3Di3.90.930.12. 2 hits.
InterProiView protein in InterPro
IPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR002359. Ribosomal_L6_CS2.
PANTHERiPTHR11655. PTHR11655. 1 hit.
PfamiView protein in Pfam
PF00347. Ribosomal_L6. 2 hits.
PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
SUPFAMiSSF56053. SSF56053. 2 hits.
PROSITEiView protein in PROSITE
PS00700. RIBOSOMAL_L6_2. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRL9_CAEEL
AccessioniPrimary (citable) accession number: Q95Y90
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 11, 2002
Last sequence update: December 1, 2001
Last modified: June 7, 2017
This is version 107 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.