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Q95UI6 (Q95UI6_DROME) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 87. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Hephaestus, isoform H EMBL AAO41627.1

Hephaestus, isoform O EMBL ACZ95080.1

Hephaestus, isoform R EMBL ACZ95083.1

LD04329p EMBL ABV82366.1
Gene names
Name:heph FlyBase FBgn0011224 EMBL AAL14775.1
ORF Names:CG31000 FlyBase FBgn0011224, Dmel_CG31000 EMBL AAO41627.1
OrganismDrosophila melanogaster (Fruit fly) EMBL AAL14775.1
Taxonomic identifier7227 [NCBI]
Taxonomic lineageEukaryotaMetazoaArthropodaHexapodaInsectaPterygotaNeopteraEndopterygotaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora

Protein attributes

Sequence length789 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
Q95UI6 [UniParc].

Last modified December 1, 2001. Version 1.
Checksum: 077A8819FDDF61C6

FASTA78984,617
        10         20         30         40         50         60 
MMSCPIPMPM PISSLHKSEF EPVNIGVKQM QLLHAPASTH PHPHPHQHPQ HSAASAAAYQ 

        70         80         90        100        110        120 
AMQVHQQQHQ QQQQAAVFHH QVAAIAAQQQ QQQQQAQVQH QQQMQQQFHY QAQAQAQAQA 

       130        140        150        160        170        180 
MLQTYMQLQV NSAVGVSTAP ATPTKPVAAQ IPGAISGPIA GPVPVSVPTQ FFTAPSTPLT 

       190        200        210        220        230        240 
IIPAAAVASS AMFATAATPT SAATTPTNNR GSDELLSQAA VMAPASDNNN QDLATKKAKL 

       250        260        270        280        290        300 
EPGTVLAGGI AKASKVIHLR NIPNESGEAD VIALGIPFGR VTNVLVLKGK NQAFIEMADE 

       310        320        330        340        350        360 
ISATSMVSCY TVTPPQMRGR MVYVQFSNHR ELKTDQGHNN STAHSDYSVQ SPASGSPLPL 

       370        380        390        400        410        420 
SAAANATSNN ANSSSDSNSA MGILQNTSAV NAGGNTNAAG GPNTVLRVIV ESLMYPVSLD 

       430        440        450        460        470        480 
ILHQIFQRYG KVLKIVTFTK NNSFQALIQY PDANSAQHAK SLLDGQNIYN GCCTLRIDNS 

       490        500        510        520        530        540 
KLTALNVKYN NDKSRDFTNP ALPPGEPGVD IMPTAGGLMN TNDLLLIAAR QRPSLSGDKI 

       550        560        570        580        590        600 
VNGLGAPGVL PPFALGLGTP LTGGYNNALP NLAAFSLANS GALQTTAPAM RGYSNVLLVS 

       610        620        630        640        650        660 
NLNEEMVTPD ALFTLFGVYG DVQRVKILYN KKDSALIQMA EPQQAYLAMS HLDKLRLWGK 

       670        680        690        700        710        720 
PIRVMASKHQ AVQLPKEGQP DAGLTRDYSQ NPLHRFKKPG SKNYQNIYPP SATLHLSNIP 

       730        740        750        760        770        780 
SSCSEDDIKE AFTSNSFEVK AFKFFPKDRK MALLQLLSVE EAVLALIKMH NHQLSESNHL 


RVSFSKSNI 

« Hide

References

« Hide 'large scale' references
[1]"The Release 5.1 annotation of Drosophila melanogaster heterochromatin."
Smith C.D., Shu S., Mungall C.J., Karpen G.H.
Science 316:1586-1591(2007) [PubMed: 17569856] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[2]"Sequence finishing and mapping of Drosophila melanogaster heterochromatin."
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M., Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A., Dimitri P., Karpen G.H., Celniker S.E.
Science 316:1625-1628(2007) [PubMed: 17569867] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[3]"The genome sequence of Drosophila melanogaster."
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D. expand/collapse author list , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L., Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
Science 287:2185-2195(2000) [PubMed: 10731132] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[4]"Combined evidence annotation of transposable elements in genome sequences."
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D., Ashburner M., Anxolabehere D.
PLoS Comput. Biol. 1:166-175(2005) [PubMed: 16110336] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[5]"Annotation of the Drosophila melanogaster euchromatic genome: a systematic review."
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P., Bettencourt B.R., Celniker S.E., de Grey A.D.N.J. expand/collapse author list , Drysdale R.A., Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E.
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002) [PubMed: 12537572] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Berkeley.
[6]"Heterochromatic sequences in a Drosophila whole-genome shotgun assembly."
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A., Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G., Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M., Karpen G.H.
Genome Biol. 3:RESEARCH0085.1-RESEARCH0085.16(2002) [PubMed: 12537574] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[7]"The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective."
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J.W., Svirskas R., Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M., Ashburner M., Celniker S.E.
Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002) [PubMed: 12537573] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[8]"Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence."
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A., Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A., George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R., Pacleb J.M., Park S. expand/collapse author list , Pfeiffer B.D., Richards S., Sodergren E.J., Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C., Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.
Genome Biol. 3 (12), RESEARCH0079 (2002)
Cited for: NUCLEOTIDE SEQUENCE.
[9]Stapleton M., Carlson J., Frise E., Kapadia B., Park S., Wan K., Yu C., Celniker S.
Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Berkeley EMBL ABV82366.1.
[10]Drosophila Heterochromatin Genome Project
Smith C.D., Shu S., Mungall C.J., Karpen G.H.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[11]FlyBase
Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[12]Stewart P.J., Dansereau D.A., Brook W.J.
Submitted (AUG-2001) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[13]"Drosophila melanogaster release 4 sequence."
Berkeley Drosophila Genome Project
Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R., Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E., Yu C., Rubin G.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[14]Celniker S., Carlson J., Kennedy C., Wan K., Frise E., Hoskins R., Park S., Svirskas R., Karpen G.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[15]Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S., Svirskas R., Rubin G.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AY052367 mRNA. Translation: AAL14775.1.
AE014297 Genomic DNA. Translation: AAO41627.1.
BT030984 mRNA. Translation: ABV82366.1.
AE014297 Genomic DNA. Translation: ACZ95080.1.
AE014297 Genomic DNA. Translation: ACZ95083.1.
RefSeqNP_001163787.1. NM_001170316.1.
NP_001163790.1. NM_001170319.1.
NP_788780.1. NM_176603.2.
UniGeneDm.19417.

3D structure databases

HSSPHSSP built from PDB template 1QM9 based on UniProtKB P26599.
ProteinModelPortalQ95UI6.
SMRQ95UI6. Positions 251-336, 400-506, 594-789.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ95UI6.

Proteomic databases

PRIDEQ95UI6.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaFBtr0085881; FBpp0085240; FBgn0011224.
FBtr0300263; FBpp0289491; FBgn0011224.
FBtr0300266; FBpp0289494; FBgn0011224.
GeneID48571.
KEGGdme:Dmel_CG31000.
UCSCCG31000-RH. d. melanogaster.

Organism-specific databases

CTD9843.
FlyBaseFBgn0011224. heph.

Phylogenomic databases

GeneTreeEMGT00050000000537.
InParanoidQ95UI6.
OMAAYLAMSH.
PhylomeDBQ95UI6.

Gene expression databases

ArrayExpressQ95UI6.
BgeeQ95UI6.

Family and domain databases

InterProIPR006536. HnRNP-L_PTB.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
Gene3DG3DSA:3.30.70.330. a_b_plait_nuc_bd. 4 hits.
KOK14948.
PfamPF00076. RRM_1. 2 hits.
[Graphical view]
SMARTSM00360. RRM. 4 hits.
[Graphical view]
TIGRFAMsTIGR01649. HnRNP-L_PTB. 1 hit.
PROSITEPS50102. RRM. 4 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio839481.

Entry information

Entry nameQ95UI6_DROME
AccessionPrimary (citable) accession number: Q95UI6
Entry history
Integrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: December 1, 2001
Last modified: January 25, 2012
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)