Unreviewed, UniProtKB/TrEMBL Q95RE4 (Q95RE4_DROME)

Names and origin

Protein names

Submitted name:
    Ypsilon schachtel EMBL AAF49961.3
Submitted name:
    LD37574p EMBL AAL28988.1

Gene names

Name:	yps EMBL AAL28988.1
ORF Names:	CG5654 FlyBase FBgn0022959, Dmel_CG5654 EMBL AAF49961.3

Organism

Drosophila melanogaster (Fruit fly) [Complete proteome] EMBL AAL28988.1

Taxonomic identifier

7227 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Endopterygota › Diptera › Brachycera › Muscomorpha › Ephydroidea › Drosophilidae › Drosophila › Sophophora

Protein attributes

Sequence length	352 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at transcript level.

General annotation (Comments)

Sequence similarities

Contains 1 CSD (cold-shock) domain. RuleBase RU000407V6

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	oogenesis Non-traceable author statement. Source: FlyBase regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro
Molecular function	DNA binding Inferred from electronic annotation. Source: InterPro mRNA binding Traceable author statement. Source: FlyBase protein binding Inferred from physical interaction. Source: IntAct
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q95RE4-1 [UniParc]. Last modified December 1, 2001. Version 1. Checksum: 0AB3504FECCC6AE6	FASTA	352	38,181
	10 20 30 40 50 60 MADAAESKPL AAEQQQAQQQ PEQQQNPPNP QEQDHEQEPL DELQGQQGQP APPTKEVIAT 70 80 90 100 110 120 KVTGTVKWFN VKSGYGFINR NDTREDVFVH QSAIARNNPK KAVRSVGDGE VVEFDVVIGE 130 140 150 160 170 180 KGNEAANVTG PSGEPVRGSQ FAADKRRNFR PWMKKNRRKD GEVEGEDAES SAQQQQQQAA 190 200 210 220 230 240 PIVDGQPQQQ VQSGPRQPRQ NFRRGPPGGP PGGPRGGPRG PPGGAPGGPR RYNNYYLRQP 250 260 270 280 290 300 RRGLGGGDGS AEPGVHDQNP EGLQRGEGQG PRRGGGPPGG PQRRFFRRNF NNGPPPPRRD 310 320 330 340 350 GGEYIQGQGP PRPQQPRPRR QRKPNGPGGG SEQQPEKNGA QELQNTTTES TA

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	Stapleton M., Brokstein P., Hong L., Agbayani A., Carlson J., Champe M., Chavez C., Dorsett V., Farfan D., Frise E., George R., Gonzalez M., Guarin H., Li P., Liao G., Miranda A., Mungall C.J., Nunoo J. , Pacleb J., Paragas V., Park S., Phouanenavong S., Wan K., Yu C., Lewis S.E., Rubin G.M., Celniker S. Submitted (OCT-2001) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: Berkeley EMBL AAL28988.1.
[2]	"The genome sequence of Drosophila melanogaster." Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D. , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G., Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C. Science 287:2185-2195(2000) [PubMed: 10731132] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Berkeley.
[3]	"Annotation of the Drosophila melanogaster euchromatic genome: a systematic review." Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P., Bettencourt B.R., Celniker S.E., de Grey A.D.N.J. , Drysdale R.A., Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E. Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002) [PubMed: 12537572] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Berkeley.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AE014296 Genomic DNA. Translation: AAF49961.3. AY061440 mRNA. Translation: AAL28988.1.
RefSeq	NP_524033.2.
UniGene	Dm.3601
3D structure databases
HSSP	HSSP built from PDB template 1G6P based on UniProtKB O54310.
SMR	Q95RE4. Positions 55-131.
ModBase	Search...
Protein-protein interaction databases
IntAct	Q95RE4. 4 interactions.
Proteomic databases
PRIDE	Q95RE4.
Genome annotation databases
Ensembl	FBgn0022959. Drosophila melanogaster. [Contig view]
GeneID	39377.
KEGG	dme:Dmel_CG5654.
NMPDR	fig|7227.3.peg.9494.
Organism-specific databases
FlyBase	FBgn0022959. yps.
Phylogenomic databases
HOGENOM	Q95RE4.
OMA	Q95RE4. QSAIARN.
Gene expression databases
ArrayExpress	Q95RE4.
Family and domain databases
InterPro	IPR019844. Cold-shock_conserved_site. IPR011129. Cold_shock_prot. IPR002059. CSP_DNA_bd. IPR012340. NA-bd_OB-fold. [Graphical view]
Gene3D	G3DSA:2.40.50.140. OB_NA_bd_sub. 1 hit.
Pfam	PF00313. CSD. 1 hit. [Graphical view]
PRINTS	PR00050. COLDSHOCK.
ProDom	PD000621. Cold_shock. 1 hit. [Graphical view] [Entries sharing at least one domain]
SMART	SM00357. CSP. 1 hit. [Graphical view]
PROSITE	PS00352. COLD_SHOCK. 1 hit. [Graphical view]
ProtoNet	Search...
Other Resources
NextBio	813352.

Entry information

Entry name

Q95RE4_DROME

Accession

Primary (citable) accession number: Q95RE4
Secondary accession number(s): Q9VTT5

Entry history

Integrated into UniProtKB/TrEMBL:	December 1, 2001
Last sequence update:	December 1, 2001
Last modified:	June 16, 2009
This is version 75 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)