Unreviewed, UniProtKB/TrEMBL Q95QM6 (Q95QM6_CAEEL)

Names and origin

Protein names

Submitted name:
    Putative uncharacterized protein EMBL AAL02476.1

Gene names

Name:	cdh-5 WormPep F08B4.2b
ORF Names:	F08B4.2 EMBL AAL02476.1

Organism

Caenorhabditis elegans [Complete proteome]

Taxonomic identifier

6239 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Nematoda › Chromadorea › Rhabditida › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis

Protein attributes

Sequence length	1306 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level.

Ontologies

Keywords
Cellular component	Membrane
Domain	Transmembrane Spearmint SPM002126
Ligand	Calcium RuleBase RU000484V3
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	homophilic cell adhesion Inferred from electronic annotation. Source: InterPro
Cellular component	integral to membrane Inferred from electronic annotation. Source: UniProtKB-KW plasma membrane Inferred from electronic annotation. Source: InterPro
Molecular function	calcium ion binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q95QM6-1 [UniParc]. Last modified December 1, 2001. Version 1. Checksum: 38F74229F0B4EF2C	FASTA	1,306	142,916
	10 20 30 40 50 60 MGTTVRVSPN SQSESLQILV NDEDLQPGMP PATYQYILTG LGATIFAVDQ RGFVYLNVPK 70 80 90 100 110 120 IDADPPNPST YQLNVEAREV NTVPTRRSEP VTITIHILDI NDNSPQFEQP IYMANTTASG 130 140 150 160 170 180 DERDVVKVVA TDVDSGAFGQ VTYTIAQVTN GGEDKFRYET ATNMLVATGN LVPGERYQVV 190 200 210 220 230 240 IEAIDGGGRS SQAIVIVLAL DPMHQTFSSL APLPGMETFM PNPLAMATTP GTMVTSAESE 250 260 270 280 290 300 ETIQTFVTEV NENTPPNTVV VSLGDESSRE LTYFNVVGGN EEGKFAIDDA GTIVTAEELD 310 320 330 340 350 360 REKTAMYSLQ VETRSRNPDQ HLYWTLVQVT VMDVNDNAPT FTDPQPIRLR LSIDDIEQLT 370 380 390 400 410 420 GNMIIGRIGV EDADADDNGR LELRIMPPHN KLFAISNDGI LSVNGDFTAA HFGEHDLTVV 430 440 450 460 470 480 ARDHGEPSLE TRARVQISIF GTLITMATVA PTNEVFEYTS SVEEEPQTTN PDEHLQTVTT 490 500 510 520 530 540 SPSTKNQVSQ QIFSSFPAPQ VEQTGAPVEP EFPQFPTFPT LSPHPQELPS LPTTKMAPPQ 550 560 570 580 590 600 PVPTQSPPLP TPKRLAPVFK PSQITVQIDE NESQVEITKA HATYPDGLSG TITYVLHKGD 610 620 630 640 650 660 PSLFSVSSYS GSVNLLRALD AETNSTVTIQ ISTSEAQTLE VDPKLAHFVS ITINVADKND 670 680 690 700 710 720 WIPNFESASY EFDVKEDTLP GTIVGQVNAF DQDRDEPNNR IRYRLLSAGG LEAHFNVNAE 730 740 750 760 770 780 SGLITLARPI DAFAGEKITL RIEGADSGML PLSSTTTVLI NVVATSSHLI PDASPVSNTP 790 800 810 820 830 840 NEGELQFSLR NYTASVSEAV RPPHLVQVLS VMNKPTDTRF IICNIISGNY RGAFGITAGN 850 860 870 880 890 900 DGNCELRTQM ELDRETVERY LLNITVTAGA QTDYALVSIT VLDVNDNVPR FVYDSDLGLT 910 920 930 940 950 960 TYFGAVSSVA NAFTRVLTVK AEDADLGNSS LVNYALDPLS AHSKYFSISP FGEISTKQSM 970 980 990 1000 1010 1020 STILSRNRLQ FFEFRVSACD SPISGQQLCS KADVVVNVIG STNRFKMIIY GLNPQQLKKH 1030 1040 1050 1060 1070 1080 EKDLVKSTRQ FTGSCNLLTI EKMIEHTAIE NQIRTDIYWY AVNPTTKKIC KKQDIRKLFE 1090 1100 1110 1120 1130 1140 TSNVQLIAGK VQPWFRLERI SEDAGDEGNM SSGGILSTNW KTSNILLIIL AVTVALGAII 1150 1160 1170 1180 1190 1200 GICAVCVFWS RYKTAQRNAS NFSHSYPQKL GPIYHPTMMG VDPRTEYDYE TQNVNMLISD 1210 1220 1230 1240 1250 1260 EDLTMKSGSI GVPAHQRMTL MGAGGGPGMG GPGGPQNGQG NQSYRTYGYR PAHSTAYEGD 1270 1280 1290 1300 FSIEESMYAI NPSGRLDPIT KRIQTIVIPT PDYHQRTHPN QHKSIL

References

[1]	"Genome sequence of the nematode C. elegans: a platform for investigating biology." The C. elegans sequencing consortium Science 282:2012-2018(1998) [PubMed: 9851916] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Bristol N2.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	U52002 Genomic DNA. Translation: AAL02476.1.
RefSeq	NP_501487.1.
UniGene	Cel.22993
3D structure databases
HSSP	HSSP built from PDB template 1NCJ based on UniProtKB P15116.
SMR	Q95QM6. Positions 269-439, 567-763, 821-889.
ModBase	Search...
Proteomic databases
PRIDE	Q95QM6.
Genome annotation databases
Ensembl	F08B4.2b; F08B4.2b; F08B4.2; Caenorhabditis elegans. [Genome view]
GeneID	177671.
NMPDR	fig|6239.3.peg.14327.
UCSC	F08B4.2a. c. elegans.
Organism-specific databases
CTD	177671.
WormBase	WBGene00000397. cdh-5.
WormPep	F08B4.2b. CE29253. [WorfDB]
Gene expression databases
ArrayExpress	Q95QM6.
Family and domain databases
InterPro	IPR002126. Cadherin. IPR015919. Cadherin-like. IPR020894. Cadherin_CS. [Graphical view]
Gene3D	G3DSA:2.60.40.60. Cadherin. 7 hits.
Pfam	PF00028. Cadherin. 4 hits. [Graphical view]
PRINTS	PR00205. CADHERIN.
SMART	SM00112. CA. 8 hits. [Graphical view]
PROSITE	PS00232. CADHERIN_1. 3 hits. PS50268. CADHERIN_2. 8 hits. [Graphical view]
ProtoNet	Search...
Other Resources
NextBio	897866.

Entry information

Entry name

Q95QM6_CAEEL

Accession

Primary (citable) accession number: Q95QM6

Entry history

Integrated into UniProtKB/TrEMBL:	December 1, 2001
Last sequence update:	December 1, 2001
Last modified:	February 9, 2010
This is version 51 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)