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Protein
Submitted name:

NTPase P4

Gene

4

Organism
Pseudomonas phage phi12
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei234 – 2341ADPCombined sources
Binding sitei234 – 2341ATPCombined sources
Binding sitei272 – 2721ATPCombined sources
Binding sitei288 – 2881ADPCombined sources
Binding sitei288 – 2881ATPCombined sources
Binding sitei292 – 2921ADPCombined sources
Binding sitei292 – 2921ATPCombined sources
Binding sitei310 – 3101ADPCombined sources
Binding sitei318 – 3181ATPCombined sources

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi133 – 1375ADPCombined sources
Nucleotide bindingi136 – 1372ATPCombined sources
Nucleotide bindingi277 – 2793ADPCombined sources
Nucleotide bindingi278 – 2792ATPCombined sources

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

ATP-bindingCombined sources, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Submitted name:
NTPase P4Imported
Gene namesi
Name:4Imported
OrganismiPseudomonas phage phi12Imported
Taxonomic identifieri161736 [NCBI]
Taxonomic lineageiVirusesdsRNA virusesCystoviridae
Proteomesi
  • UP000001051 Componenti: Segment L

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1W44X-ray2.00A/B/C1-331[»]
1W46X-ray2.70A/B/C1-331[»]
1W47X-ray2.50A/B/C1-331[»]
1W48X-ray2.30A/B/C1-331[»]
1W49X-ray2.40A/B/C1-331[»]
1W4AX-ray2.40A/B/C1-331[»]
1W4BX-ray2.30A/B/C1-331[»]
1W4CX-ray2.50A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/T/U/V/W/X1-331[»]
2VHCX-ray2.35A/B/C1-331[»]
2VHJX-ray1.80A/B/C1-331[»]
2VHQX-ray2.15A/B/C1-331[»]
2VHTX-ray3.00A/B/C1-331[»]
2VHUX-ray2.75A/B/C1-331[»]
4BLRX-ray1.90A/B/C1-331[»]
4BLSX-ray2.60A/B/C1-331[»]
4BLTX-ray2.40A/B/C1-331[»]
ProteinModelPortaliQ94M05.
SMRiQ94M05. Positions 1-321.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ94M05.

Family & Domainsi

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR027417. P-loop_NTPase.
IPR020973. Packaging_enz_P4.
[Graphical view]
PfamiPF11602. NTPase_P4. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.

Sequencei

Sequence statusi: Complete.

Q94M05-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIHLYDAKSF AKLRAAQYAA FHTDAPGSWF DHTSGVLESV EDGTPVLAIG
60 70 80 90 100
VESGDAIVFD KNAQRIVAYK EKSVKAEDGS VSVVQVENGF MKQGHRGWLV
110 120 130 140 150
DLTGELVGCS PVVAEFGGHR YASGMVIVTG KGNSGKTPLV HALGEALGGK
160 170 180 190 200
DKYATVRFGE PLSGYNTDFN VFVDDIARAM LQHRVIVIDS LKNVIGAAGG
210 220 230 240 250
NTTSGGISRG AFDLLSDIGA MAASRGCVVI ASLNPTSNDD KIVELVKEAS
260 270 280 290 300
RSNSTSLVIS TDVDGEWQVL TRTGEGLQRL THTLQTSYGE HSVLTIHTSK
310 320 330
QSGGKQASGK AIQTVIKNDE LESVLRRLTS N
Length:331
Mass (Da):35,108
Last modified:December 1, 2001 - v1
Checksum:i115EC51581B12DBF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF408636 Genomic RNA. Translation: AAL01108.1.
RefSeqiNP_690824.1. NC_004173.1.

Genome annotation databases

GeneIDi984328.
KEGGivg:984328.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF408636 Genomic RNA. Translation: AAL01108.1.
RefSeqiNP_690824.1. NC_004173.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1W44X-ray2.00A/B/C1-331[»]
1W46X-ray2.70A/B/C1-331[»]
1W47X-ray2.50A/B/C1-331[»]
1W48X-ray2.30A/B/C1-331[»]
1W49X-ray2.40A/B/C1-331[»]
1W4AX-ray2.40A/B/C1-331[»]
1W4BX-ray2.30A/B/C1-331[»]
1W4CX-ray2.50A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/T/U/V/W/X1-331[»]
2VHCX-ray2.35A/B/C1-331[»]
2VHJX-ray1.80A/B/C1-331[»]
2VHQX-ray2.15A/B/C1-331[»]
2VHTX-ray3.00A/B/C1-331[»]
2VHUX-ray2.75A/B/C1-331[»]
4BLRX-ray1.90A/B/C1-331[»]
4BLSX-ray2.60A/B/C1-331[»]
4BLTX-ray2.40A/B/C1-331[»]
ProteinModelPortaliQ94M05.
SMRiQ94M05. Positions 1-321.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi984328.
KEGGivg:984328.

Miscellaneous databases

EvolutionaryTraceiQ94M05.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR027417. P-loop_NTPase.
IPR020973. Packaging_enz_P4.
[Graphical view]
PfamiPF11602. NTPase_P4. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Characterization of phi12, a bacteriophage related to phi6: nucleotide sequence of the large double-stranded RNA."
    Gottlieb P., Potgieter C., Wei H., Toporovsky I.
    Virology 295:266-271(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  2. "Atomic snapshots of an RNA packaging motor reveal conformational changes linking ATP hydrolysis to RNA translocation."
    Mancini E.J., Kainov D.E., Grimes J.M., Tuma R., Bamford D.H., Stuart D.I.
    Cell 118:743-755(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS) IN COMPLEX WITH ADP.
  3. "Structural basis of mechanochemical coupling in a hexameric molecular motor."
    Kainov D.E., Mancini E.J., Telenius J., Lisal J., Grimes J.M., Bamford D.H., Stuart D.I., Tuma R.
    J. Biol. Chem. 283:3607-3617(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS) IN COMPLEX WITH ADP AND ATP.
  4. "Tracking in atomic detail the functional specializations in viral RecA helicases that occur during evolution."
    El Omari K., Meier C., Kainov D., Sutton G., Grimes J.M., Poranen M.M., Bamford D.H., Tuma R., Stuart D.I., Mancini E.J.
    Nucleic Acids Res. 41:9396-9410(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.90 ANGSTROMS).

Entry informationi

Entry nameiQ94M05_9VIRU
AccessioniPrimary (citable) accession number: Q94M05
Entry historyi
Integrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: December 1, 2001
Last modified: April 13, 2016
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.