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Protein

ABC transporter D family member 1

Gene

ABCC1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Contributes to the transport of fatty acids and their derivatives (acyl CoAs) across the peroxisomal membrane. Provides acetate to the glyoxylate cycle in developing seedlings. Involved in pollen tube elongation, ovule fertilization, and seeds germination after imbibition (controls the switch between the opposing developmental programs of dormancy and germination), probably by promoting beta-oxidation of storage lipids during gluconeogenesis. Required for biosynthesis of jasmonic acid and conversion of indole butyric acid to indole acetic acid. Confers sensitivity to monofluoroacetic acid (FAc), a toxic acetate analog, and to 2,4-dichlorophenoxybutyric acid (2,4-DB) and indole-3-butyric acid (IBA), two precursors of auxin after beta-oxidation.11 Publications

Catalytic activityi

ATP + H2O + fatty acyl CoA(Cis) = ADP + phosphate + fatty acyl CoA(Trans).

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi481 – 4888ATPPROSITE-ProRule annotation
Nucleotide bindingi1130 – 11378ATPPROSITE-ProRule annotation

GO - Molecular functioni

GO - Biological processi

  • lipid catabolic process Source: CACAO
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Keywords - Biological processi

Transport

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciARA:AT4G39850-MONOMER.
ARA:GQT-459-MONOMER.
ARA:GQT-460-MONOMER.
BRENDAi3.6.3.47. 399.
ReactomeiR-ATH-1369062. ABC transporters in lipid homeostasis.
R-ATH-2046105. Linoleic acid (LA) metabolism.
R-ATH-2046106. alpha-linolenic acid (ALA) metabolism.
R-ATH-390247. Beta-oxidation of very long chain fatty acids.

Protein family/group databases

TCDBi3.A.1.203.5. the atp-binding cassette (abc) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
ABC transporter D family member 1 (EC:3.6.3.47)
Short name:
ABC transporter ABCD.1
Short name:
AtABCD1
Alternative name(s):
Peroxisomal ABC transporter 1
Short name:
AtPXA1
Protein ACETATE NON-UTILIZING 2
Protein COMATOSE
Protein PEROXISOME DEFECTIVE 3
Short name:
Ped3p
Gene namesi
Name:ABCC1
Synonyms:ACN2, CTS, PED3, PMP2, PXA1
Ordered Locus Names:At4g39850
ORF Names:T5J17.20
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

TAIRiAT4G39850.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei24 – 4421HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei142 – 16221HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei247 – 26721HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei342 – 36221HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei900 – 92021HelicalPROSITE-ProRule annotationAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Glyoxysome, Membrane, Peroxisome

Pathology & Biotechi

Disruption phenotypei

Impaired germination after imbibition, rescued by sucrose treatment. Resistance to FAc, IBA and 2,4-DB. Compromised ability to convert acetate into soluble carbohydrate. Defective in lipid mobilization and accumulate acyl CoAs. Poor initiation of lateral root formation and smaller rosettes with fewer leaves than in wild-type. Crinkled and waxy leaves.10 Publications

Mutagenesis

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Mutagenesisi810 – 8101S → N in ped3-4; Normal germination, but impaired seedling, roots and leaves growth. 1 Publication
Mutagenesisi1035 – 10351R → W in ped3-2; Normal germination, but impaired seedling, roots and leaves growth. 1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 13371337ABC transporter D family member 1PRO_0000379135Add
BLAST

Proteomic databases

PaxDbiQ94FB9.
PRIDEiQ94FB9.

PTM databases

iPTMnetiQ94FB9.

Expressioni

Developmental stagei

Levels increase transiently after germination, before and during radicle emergence, especially in darkness (at protein level).2 Publications

Gene expression databases

ExpressionAtlasiQ94FB9. baseline and differential.
GenevisibleiQ94FB9. AT.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
PEX19-1Q9SRQ32EBI-7933055,EBI-1151789
PEX19-2Q94EI32EBI-7933055,EBI-7933092

Protein-protein interaction databases

BioGridi15424. 7 interactions.
IntActiQ94FB9. 2 interactions.
MINTiMINT-8381987.
STRINGi3702.AT4G39850.3.

Structurei

3D structure databases

ProteinModelPortaliQ94FB9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini117 – 395279ABC transmembrane type-1 1PROSITE-ProRule annotationAdd
BLAST
Domaini448 – 695248ABC transporter 1PROSITE-ProRule annotationAdd
BLAST
Domaini751 – 1049299ABC transmembrane type-1 2PROSITE-ProRule annotationAdd
BLAST
Domaini1091 – 1337247ABC transporter 2PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 2 ABC transmembrane type-1 domains.PROSITE-ProRule annotation
Contains 2 ABC transporter domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG0060. Eukaryota.
KOG0064. Eukaryota.
COG4178. LUCA.
HOGENOMiHOG000030359.
PhylomeDBiQ94FB9.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR003593. AAA+_ATPase.
IPR011527. ABC1_TM_dom.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF06472. ABC_membrane_2. 2 hits.
PF00005. ABC_tran. 2 hits.
[Graphical view]
SMARTiSM00382. AAA. 2 hits.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
SSF90123. SSF90123. 2 hits.
PROSITEiPS50929. ABC_TM1F. 2 hits.
PS00211. ABC_TRANSPORTER_1. 2 hits.
PS50893. ABC_TRANSPORTER_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket

Note: A number of isoforms are produced. According to EST sequences.

Isoform 1 (identifier: Q94FB9-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MPSLQLLQLT ERGRGLVASR RKSILLAAGI VAAGGTAVYL KSRVASRRPD
60 70 80 90 100
SSRLCNGQSD DDETLEKLTA TDQNAKITTK KKKGGGLKSL QVLTAILLSQ
110 120 130 140 150
MGKMGARDLL ALVATVVFRT ALSNRLAKVQ GFLFRAAFLR RAPLFLRLIS
160 170 180 190 200
ENIMLCFMLS TLHSTSKYIT GALSLRFRKI LTKIIHSHYF ENMVYYKISH
210 220 230 240 250
VDGRITHPEQ RIASDVPRFS SELSDLILDD LTAVTDGILY AWRLCSYASP
260 270 280 290 300
KYIFWILAYV LGAGTAIRNF SPSFGKLMSK EQQLEGEYRQ LHSRLRTHSE
310 320 330 340 350
SIAFYGGETR EESHIQQKFK NLVSHMSHVL HDHWWFGMIQ DFLLKYLGAT
360 370 380 390 400
VAVILIIEPF FSGHLRPDDS TLGRAEMLSN IRYHTSVIIS LFQALGTLSI
410 420 430 440 450
SSRRLNRLSG YADRIHELMA VSRELSGDDK SSFQRNRSRN YLSEANYVEF
460 470 480 490 500
SDVKVVTPTG NVLVEDLTLR VEQGSNLLIT GPNGSGKSSL FRVLGGLWPL
510 520 530 540 550
VSGHIVKPGV GSDLNKEIFY VPQRPYMAVG TLRDQLIYPL TSGQESELLT
560 570 580 590 600
EIGMVELLKN VDLEYLLDRY QPEKEVNWGD ELSLGEQQRL GMARLFYHKP
610 620 630 640 650
KFAILDECTS AVTTDMEERF AAKVRAMGTS CITISHRPAL VAFHDVVLSL
660 670 680 690 700
DGEGGWSVHY KRDDSALLTD AEIDSVKSSD TDRQNDAMVV QRAFAAARKE
710 720 730 740 750
SATNSKAQSY QTQLIARSPV VDKSVVLPRF PQPQTSQRAL PSRVAAMLNV
760 770 780 790 800
LIPTIFDKQG AQLLAVACLV VSRTLISDRI ASLNGTTVKY VLEQDKAAFV
810 820 830 840 850
RLIGLSVLQS GASSIIAPSL RHLTQRLALG WRIRLTQHLL RNYLRNNAFY
860 870 880 890 900
KVFHMSGNSI DADQRLTRDL EKLTADLSGL LTGMVKPSVD ILWFTWRMKL
910 920 930 940 950
LTGQRGVAIL YTYMLLGLGF LRRVAPDFGD LAGEEQQLEG KFRFMHERLN
960 970 980 990 1000
THAESIAFFG GGAREKAMVD KKFRALLDHS LMLLRKKWLY GILDDFVTKQ
1010 1020 1030 1040 1050
LPNNVTWGLS LLYALEHKGD RALVSTQGEL AHALRYLASV VSQSFMAFGD
1060 1070 1080 1090 1100
ILELHKKFLE LSGGINRIFE LDEFLDASQS GVTSENQTSR LDSQDLLSFS
1110 1120 1130 1140 1150
EVDIITPAQK LMASKLSCEI VSGKSLLVTG PNGSGKTSVF RVLRDIWPTV
1160 1170 1180 1190 1200
CGRLTKPSLD IKELGSGNGM FFVPQRPYTC LGTLRDQIIY PLSKEEAEKR
1210 1220 1230 1240 1250
AAKLYTSGES STEAGSILDS HLKTILENVR LVYLLERDVG GWDATTNWED
1260 1270 1280 1290 1300
ILSLGEQQRL GMARLFFHRP KFGVLDECTN ATSVDVEEQL YRVARDMGVT
1310 1320 1330
FITSSQRPAL IPFHSLELRL IDGEGNWELR SIEQTTE
Length:1,337
Mass (Da):149,576
Last modified:December 1, 2001 - v1
Checksum:i9AA08CF944FC8BFE
GO

Sequence cautioni

The sequence CAB38898.1 differs from that shown. Reason: Erroneous gene model prediction. Curated
The sequence CAB80648.1 differs from that shown. Reason: Erroneous gene model prediction. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti64 – 641T → A in BAB84551 (PubMed:11828016).Curated
Sequence conflicti64 – 641T → A in BAB84550 (PubMed:11828016).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF378120 mRNA. Translation: AAK95343.1.
AJ311341 Genomic DNA. Translation: CAC85290.1.
AB070615 Genomic DNA. Translation: BAB84550.1.
AB070616 mRNA. Translation: BAB84551.1.
AL035708 Genomic DNA. Translation: CAB38898.1. Sequence problems.
AL161596 Genomic DNA. Translation: CAB80648.1. Sequence problems.
CP002687 Genomic DNA. Translation: AEE87126.1.
PIRiT06091.
RefSeqiNP_568072.1. NM_120148.2. [Q94FB9-1]
UniGeneiAt.22795.

Genome annotation databases

EnsemblPlantsiAT4G39850.1; AT4G39850.1; AT4G39850. [Q94FB9-1]
GeneIDi830144.
KEGGiath:AT4G39850.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF378120 mRNA. Translation: AAK95343.1.
AJ311341 Genomic DNA. Translation: CAC85290.1.
AB070615 Genomic DNA. Translation: BAB84550.1.
AB070616 mRNA. Translation: BAB84551.1.
AL035708 Genomic DNA. Translation: CAB38898.1. Sequence problems.
AL161596 Genomic DNA. Translation: CAB80648.1. Sequence problems.
CP002687 Genomic DNA. Translation: AEE87126.1.
PIRiT06091.
RefSeqiNP_568072.1. NM_120148.2. [Q94FB9-1]
UniGeneiAt.22795.

3D structure databases

ProteinModelPortaliQ94FB9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi15424. 7 interactions.
IntActiQ94FB9. 2 interactions.
MINTiMINT-8381987.
STRINGi3702.AT4G39850.3.

Protein family/group databases

TCDBi3.A.1.203.5. the atp-binding cassette (abc) superfamily.

PTM databases

iPTMnetiQ94FB9.

Proteomic databases

PaxDbiQ94FB9.
PRIDEiQ94FB9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT4G39850.1; AT4G39850.1; AT4G39850. [Q94FB9-1]
GeneIDi830144.
KEGGiath:AT4G39850.

Organism-specific databases

TAIRiAT4G39850.

Phylogenomic databases

eggNOGiKOG0060. Eukaryota.
KOG0064. Eukaryota.
COG4178. LUCA.
HOGENOMiHOG000030359.
PhylomeDBiQ94FB9.

Enzyme and pathway databases

BioCyciARA:AT4G39850-MONOMER.
ARA:GQT-459-MONOMER.
ARA:GQT-460-MONOMER.
BRENDAi3.6.3.47. 399.
ReactomeiR-ATH-1369062. ABC transporters in lipid homeostasis.
R-ATH-2046105. Linoleic acid (LA) metabolism.
R-ATH-2046106. alpha-linolenic acid (ALA) metabolism.
R-ATH-390247. Beta-oxidation of very long chain fatty acids.

Miscellaneous databases

PROiQ94FB9.

Gene expression databases

ExpressionAtlasiQ94FB9. baseline and differential.
GenevisibleiQ94FB9. AT.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR003593. AAA+_ATPase.
IPR011527. ABC1_TM_dom.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF06472. ABC_membrane_2. 2 hits.
PF00005. ABC_tran. 2 hits.
[Graphical view]
SMARTiSM00382. AAA. 2 hits.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
SSF90123. SSF90123. 2 hits.
PROSITEiPS50929. ABC_TM1F. 2 hits.
PS00211. ABC_TRANSPORTER_1. 2 hits.
PS50893. ABC_TRANSPORTER_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The Arabidopsis pxa1 mutant is defective in an ATP-binding cassette transporter-like protein required for peroxisomal fatty acid beta-oxidation."
    Zolman B.K., Silva I.D., Bartel B.
    Plant Physiol. 127:1266-1278(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, DISRUPTION PHENOTYPE.
    Strain: cv. Columbia.
  2. "Control of germination and lipid mobilization by COMATOSE, the Arabidopsis homologue of human ALDP."
    Footitt S., Slocombe S.P., Larner V., Kurup S., Wu Y., Larson T., Graham I., Baker A., Holdsworth M.
    EMBO J. 21:2912-2922(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], FUNCTION, DISRUPTION PHENOTYPE, DEVELOPMENTAL STAGE, SUBCELLULAR LOCATION.
    Strain: cv. Columbia.
  3. "Ped3p is a peroxisomal ATP-binding cassette transporter that might supply substrates for fatty acid beta-oxidation."
    Hayashi M., Nito K., Takei-Hoshi R., Yagi M., Kondo M., Suenaga A., Yamaya T., Nishimura M.
    Plant Cell Physiol. 43:1-11(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA], MUTAGENESIS OF SER-810 AND ARG-1035, FUNCTION, DEVELOPMENTAL STAGE, SUBCELLULAR LOCATION, DISRUPTION PHENOTYPE.
  4. "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana."
    Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M., de Simone V., Obermaier B.
    , Mache R., Mueller M., Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B., Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A., Martienssen R., McCombie W.R.
    Nature 402:769-777(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  5. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  6. "The Arabidopsis thaliana ABC protein superfamily, a complete inventory."
    Sanchez-Fernandez R., Davies T.G., Coleman J.O., Rea P.A.
    J. Biol. Chem. 276:30231-30244(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.
  7. "Multifunctionality of plant ABC transporters -- more than just detoxifiers."
    Martinoia E., Klein M., Geisler M., Bovet L., Forestier C., Kolukisaoglu H.U., Mueller-Roeber B., Schulz B.
    Planta 214:345-355(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY.
  8. "2,4-Dichlorophenoxybutyric acid-resistant mutants of Arabidopsis have defects in glyoxysomal fatty acid beta-oxidation."
    Hayashi M., Toriyama K., Kondo M., Nishimura M.
    Plant Cell 10:183-195(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION, DISRUPTION PHENOTYPE.
  9. "The Arabidopsis COMATOSE locus regulates germination potential."
    Russell L., Larner V., Kurup S., Bougourd S., Holdsworth M.
    Development 127:3759-3767(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION, DISRUPTION PHENOTYPE.
  10. "Genetic analysis of indole-3-butyric acid responses in Arabidopsis thaliana reveals four mutant classes."
    Zolman B.K., Yoder A., Bartel B.
    Genetics 156:1323-1337(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION.
  11. "Acetate non-utilizing mutants of Arabidopsis: evidence that organic acids influence carbohydrate perception in germinating seedlings."
    Hooks M.A., Turner J.E., Murphy E.C., Graham I.A.
    Mol. Genet. Genomics 271:249-256(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION, DISRUPTION PHENOTYPE.
  12. "Analysis of the role of COMATOSE and peroxisomal beta-oxidation in the determination of germination potential in Arabidopsis."
    Footitt S., Marquez J., Schmuths H., Baker A., Theodoulou F.L., Holdsworth M.
    J. Exp. Bot. 57:2805-2814(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION, DISRUPTION PHENOTYPE.
  13. "The COMATOSE ATP-binding cassette transporter is required for full fertility in Arabidopsis."
    Footitt S., Dietrich D., Fait A., Fernie A.R., Holdsworth M.J., Baker A., Theodoulou F.L.
    Plant Physiol. 144:1467-1480(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION, DISRUPTION PHENOTYPE.
  14. "Gene expression profiling reveals defined functions of the ATP-binding cassette transporter COMATOSE late in phase II of germination."
    Carrera E., Holman T., Medhurst A., Peer W., Schmuths H., Footitt S., Theodoulou F.L., Holdsworth M.J.
    Plant Physiol. 143:1669-1679(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION, DISRUPTION PHENOTYPE.
  15. "The Arabidopsis ALDP protein homologue COMATOSE is instrumental in peroxisomal acetate metabolism."
    Hooks M.A., Turner J.E., Murphy E.C., Johnston K.A., Burr S., Jaroslawski S.
    Biochem. J. 406:399-406(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION, DISRUPTION PHENOTYPE.
  16. Cited for: GENE FAMILY, NOMENCLATURE.

Entry informationi

Entry nameiAB1D_ARATH
AccessioniPrimary (citable) accession number: Q94FB9
Secondary accession number(s): Q8VWH7, Q9SMR8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 7, 2009
Last sequence update: December 1, 2001
Last modified: June 8, 2016
This is version 121 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.