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Protein

Uncharacterized protein At5g02240

Gene

At5g02240

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

  • response to abscisic acid Source: TAIR
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein At5g02240
Gene namesi
Ordered Locus Names:At5g02240
ORF Names:T7H20_290
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G02240.

Subcellular locationi

GO - Cellular componenti

  • apoplast Source: TAIR
  • chloroplast stroma Source: TAIR
  • cytosol Source: TAIR
  • plasma membrane Source: TAIR
  • vacuolar membrane Source: TAIR
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedCombined sources
ChainiPRO_00001832682 – 253Uncharacterized protein At5g02240Add BLAST252

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei2N-acetylalanineCombined sources1

Keywords - PTMi

Acetylation

Proteomic databases

PaxDbiQ94EG6.
PRIDEiQ94EG6.

PTM databases

iPTMnetiQ94EG6.

Expressioni

Gene expression databases

GenevisibleiQ94EG6. AT.

Interactioni

Subunit structurei

Homodimer.1 Publication

Protein-protein interaction databases

STRINGi3702.AT5G02240.1.

Structurei

Secondary structure

1253
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi6 – 11Combined sources6
Helixi15 – 26Combined sources12
Turni27 – 30Combined sources4
Beta strandi32 – 38Combined sources7
Helixi40 – 45Combined sources6
Beta strandi52 – 54Combined sources3
Helixi60 – 67Combined sources8
Beta strandi71 – 75Combined sources5
Helixi105 – 108Combined sources4
Helixi111 – 123Combined sources13
Beta strandi126 – 133Combined sources8
Turni134 – 137Combined sources4
Helixi142 – 148Combined sources7
Helixi151 – 163Combined sources13
Beta strandi165 – 167Combined sources3
Beta strandi169 – 174Combined sources6
Beta strandi176 – 178Combined sources3
Beta strandi182 – 185Combined sources4
Beta strandi187 – 191Combined sources5
Helixi194 – 197Combined sources4
Beta strandi202 – 204Combined sources3
Helixi205 – 215Combined sources11
Helixi219 – 221Combined sources3
Beta strandi224 – 230Combined sources7
Turni233 – 235Combined sources3
Helixi242 – 247Combined sources6

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1XQ6X-ray1.80A/B2-253[»]
1YBMX-ray2.10A/B2-253[»]
2Q46X-ray1.80A/B2-253[»]
2Q4BX-ray2.10A/B2-253[»]
ProteinModelPortaliQ94EG6.
SMRiQ94EG6.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ94EG6.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG1203. Eukaryota.
COG0702. LUCA.
HOGENOMiHOG000262433.
InParanoidiQ94EG6.
OMAiLDMKLAG.
OrthoDBiEOG09360JDU.
PhylomeDBiQ94EG6.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR016040. NAD(P)-bd_dom.
[Graphical view]
PfamiPF13460. NAD_binding_10. 1 hit.
[Graphical view]
SUPFAMiSSF51735. SSF51735. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q94EG6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MANLPTVLVT GASGRTGQIV YKKLKEGSDK FVAKGLVRSA QGKEKIGGEA
60 70 80 90 100
DVFIGDITDA DSINPAFQGI DALVILTSAV PKMKPGFDPT KGGRPEFIFE
110 120 130 140 150
DGQYPEQVDW IGQKNQIDAA KVAGVKHIVV VGSMGGTNPD HPLNKLGNGN
160 170 180 190 200
ILVWKRKAEQ YLADSGTPYT IIRAGGLLDK EGGVRELLVG KDDELLQTDT
210 220 230 240 250
KTVPRADVAE VCIQALLFEE AKNKAFDLGS KPEGTSTPTK DFKALFSQVT

SRF
Length:253
Mass (Da):27,103
Last modified:December 1, 2001 - v1
Checksum:iF42BDB49982CC75C
GO

Sequence cautioni

The sequence CAB82997 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL162508 Genomic DNA. Translation: CAB82997.1. Sequence problems.
CP002688 Genomic DNA. Translation: AED90449.1.
AY142045 mRNA. Translation: AAM98309.1.
BT000751 mRNA. Translation: AAN31891.1.
AK221714 mRNA. Translation: BAD95439.1.
AF410336 mRNA. Translation: AAK95322.1.
PIRiT48245.
RefSeqiNP_568098.1. NM_120302.3.
UniGeneiAt.21103.

Genome annotation databases

EnsemblPlantsiAT5G02240.1; AT5G02240.1; AT5G02240.
GeneIDi830851.
GrameneiAT5G02240.1; AT5G02240.1; AT5G02240.
KEGGiath:AT5G02240.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL162508 Genomic DNA. Translation: CAB82997.1. Sequence problems.
CP002688 Genomic DNA. Translation: AED90449.1.
AY142045 mRNA. Translation: AAM98309.1.
BT000751 mRNA. Translation: AAN31891.1.
AK221714 mRNA. Translation: BAD95439.1.
AF410336 mRNA. Translation: AAK95322.1.
PIRiT48245.
RefSeqiNP_568098.1. NM_120302.3.
UniGeneiAt.21103.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1XQ6X-ray1.80A/B2-253[»]
1YBMX-ray2.10A/B2-253[»]
2Q46X-ray1.80A/B2-253[»]
2Q4BX-ray2.10A/B2-253[»]
ProteinModelPortaliQ94EG6.
SMRiQ94EG6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT5G02240.1.

PTM databases

iPTMnetiQ94EG6.

Proteomic databases

PaxDbiQ94EG6.
PRIDEiQ94EG6.

Protocols and materials databases

DNASUi830851.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G02240.1; AT5G02240.1; AT5G02240.
GeneIDi830851.
GrameneiAT5G02240.1; AT5G02240.1; AT5G02240.
KEGGiath:AT5G02240.

Organism-specific databases

TAIRiAT5G02240.

Phylogenomic databases

eggNOGiKOG1203. Eukaryota.
COG0702. LUCA.
HOGENOMiHOG000262433.
InParanoidiQ94EG6.
OMAiLDMKLAG.
OrthoDBiEOG09360JDU.
PhylomeDBiQ94EG6.

Miscellaneous databases

EvolutionaryTraceiQ94EG6.
PROiQ94EG6.

Gene expression databases

GenevisibleiQ94EG6. AT.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR016040. NAD(P)-bd_dom.
[Graphical view]
PfamiPF13460. NAD_binding_10. 1 hit.
[Graphical view]
SUPFAMiSSF51735. SSF51735. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiY5224_ARATH
AccessioniPrimary (citable) accession number: Q94EG6
Secondary accession number(s): Q9LZK8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 30, 2005
Last sequence update: December 1, 2001
Last modified: November 30, 2016
This is version 101 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.