Reviewed,
UniProtKB/Swiss-Prot Q94BT2 (AIR12_ARATH)
Last modified
October 13, 2009.
Version 51.
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Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents
Names and origin
| Protein names | Recommended name: Auxin-induced in root cultures protein 12 | ||||||
| Gene names |
| ||||||
| Organism | Arabidopsis thaliana (Mouse-ear cress) [Complete proteome] | ||||||
| Taxonomic identifier | 3702 [NCBI] | ||||||
| Taxonomic lineage | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › eurosids II › Brassicales › Brassicaceae › Arabidopsis |
Protein attributes
| Sequence length | 252 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Subcellular location | |
| Developmental stage | Expressed during auxin-induced lateral root formation. Ref.1 |
| Induction | Induced between 4 and 8 hours after treatment with auxin and remains high for at least 24 hours. Ref.1 |
| Sequence similarities | Contains 1 DOMON domain. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Auxin signaling pathway |
| Cellular component | Cell membrane Membrane |
| Domain | Signal |
| PTM | GPI-anchor Glycoprotein Lipoprotein |
| Technical term | Complete proteome |
| Gene Ontology (GO) | |
| Biological process | auxin mediated signaling pathway Inferred from electronic annotation. Source: UniProtKB-KW lateral root morphogenesis Ref.1Inferred from expression pattern. Source: TAIR |
| Cellular component | anchored to plasma membrane Ref.4 Inferred from direct assay. Source: TAIR |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Signal peptide | 1 – 25 | 25 | Potential | ||||||
| Chain | 26 – 228 | 203 | Auxin-induced in root cultures protein 12 | PRO_0000020655 | |||||
| Propeptide | 229 – 252 | 24 | Removed in mature form Potential | PRO_0000020656 | |||||
Regions | |||||||||
| Domain | 49 – 165 | 117 | DOMON | ||||||
Amino acid modifications | |||||||||
| Lipidation | 228 | 1 | GPI-anchor amidated glycine Potential | ||||||
| Glycosylation | 58 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 61 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 114 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 167 | 1 | N-linked (GlcNAc...) Potential | ||||||
Experimental info | |||||||||
| Sequence conflict | 147 | 1 | T → NR in AAC62613. Ref.1 | ||||||
| Sequence conflict | 155 | 1 | A → R in AAC62613. Ref.1 | ||||||
| Sequence conflict | 207 | 1 | P → PSPGSAP Ref.1 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Isolation and characterization of cDNA clones corresponding with mRNAs that accumulate during auxin-induced lateral root formation." Neuteboom L.W., Ng J.M.Y., Kuyper M., Clijdesdale O.R., Hooykaas P.J.J., van der Zaal B.J. Plant Mol. Biol. 39:273-287(1999) [PubMed: 10080694] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], INDUCTION, DEVELOPMENTAL STAGE. Strain: cv. C24. Tissue: Cultured root. |
| [2] | "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana." Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F. Tabata S.Nature 408:820-822(2000) [PubMed: 11130713] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia. |
| [3] | "Empirical analysis of transcriptional activity in the Arabidopsis genome." Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. Ecker J.R.Science 302:842-846(2003) [PubMed: 14593172] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 8-252. Strain: cv. Columbia. |
| [4] | "Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis." Borner G.H.H., Lilley K.S., Stevens T.J., Dupree P. Plant Physiol. 132:568-577(2003) [PubMed: 12805588] [Abstract] Cited for: GPI-ANCHOR [LARGE SCALE ANALYSIS], MASS SPECTROMETRY. Tissue: Callus. |
| [5] | "Proteomic analysis of glycosylphosphatidylinositol-anchored membrane proteins." Elortza F., Nuehse T.S., Foster L.J., Stensballe A., Peck S.C., Jensen O.N. Mol. Cell. Proteomics 2:1261-1270(2003) [PubMed: 14517339] [Abstract] Cited for: GPI-ANCHOR [LARGE SCALE ANALYSIS], MASS SPECTROMETRY. |
| [6] | "Modification-specific proteomics of plasma membrane proteins: identification and characterization of glycosylphosphatidylinositol-anchored proteins released upon phospholipase D treatment." Elortza F., Mohammed S., Bunkenborg J., Foster L.J., Nuehse T.S., Brodbeck U., Peck S.C., Jensen O.N. J. Proteome Res. 5:935-943(2006) [PubMed: 16602701] [Abstract] Cited for: GPI-ANCHOR [LARGE SCALE ANALYSIS], MASS SPECTROMETRY. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| AF055850 mRNA. Translation: AAC62613.1. AC009853 Genomic DNA. Translation: AAF02148.1. AY039908 mRNA. Translation: AAK64012.2. Different initiation. AY077679 mRNA. Translation: AAL76157.1. Different initiation. | |
| IPI | IPI00543636. |
| PIR | T51337. |
3D structure databases | |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | Q94BT2. |
Proteomic databases | |
| PRIDE | Q94BT2. |
Genome annotation databases | |
| GenomeReviews | Gene locus AT3G07390 in contig BA000014_GR. |
| NMPDR | fig|3702.1.peg.12763. |
Organism-specific databases | |
| TAIR | At3g07390. |
Gene expression databases | |
| ArrayExpress | Q94BT2. |
| Genevestigator | Q94BT2. |
| GermOnline | AT3G07390. Arabidopsis thaliana. |
Family and domain databases | |
| InterPro | IPR005018. DOMON_rel. IPR007613. DUF568_DOMON_lke. [Graphical view] |
| Pfam | PF04526. DUF568. 1 hit. [Graphical view] |
| SMART | SM00664. DoH. 1 hit. [Graphical view] |
| PROSITE | PS50836. DOMON. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | AIR12_ARATH | ||||||||
| Accession | Primary (citable) accession number: Q94BT2 Secondary accession number(s): O82442, Q9SRS7 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | PPAP (Plant Proteome Annotation Project) | ||||||||
Relevant documents
| Arabidopsis thaliana Arabidopsis thaliana: entries and gene names |
| SIMILARITY comments Index of protein domains and families |

Clusters with


