SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Q94BT2

- AIR12_ARATH

UniProt

Q94BT2 - AIR12_ARATH

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

Auxin-induced in root cultures protein 12

Gene
AIR12, At3g07390, F21O3_10
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

GO - Biological processi

  1. auxin-activated signaling pathway Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Auxin signaling pathway

Names & Taxonomyi

Protein namesi
Recommended name:
Auxin-induced in root cultures protein 12
Gene namesi
Name:AIR12
Ordered Locus Names:At3g07390
ORF Names:F21O3_10
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 3

Organism-specific databases

TAIRiAT3G07390.

Subcellular locationi

GO - Cellular componenti

  1. anchored component of membrane Source: UniProtKB-KW
  2. plasma membrane Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2525 Reviewed predictionAdd
BLAST
Chaini26 – 228203Auxin-induced in root cultures protein 12PRO_0000020655Add
BLAST
Propeptidei229 – 25224Removed in mature form Reviewed predictionPRO_0000020656Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi58 – 581N-linked (GlcNAc...) Reviewed prediction
Glycosylationi61 – 611N-linked (GlcNAc...) Reviewed prediction
Glycosylationi114 – 1141N-linked (GlcNAc...) Reviewed prediction
Glycosylationi167 – 1671N-linked (GlcNAc...) Reviewed prediction
Lipidationi228 – 2281GPI-anchor amidated glycine Reviewed prediction

Keywords - PTMi

Glycoprotein, GPI-anchor, Lipoprotein

Proteomic databases

PaxDbiQ94BT2.
PRIDEiQ94BT2.

Expressioni

Developmental stagei

Expressed during auxin-induced lateral root formation.1 Publication

Inductioni

Induced between 4 and 8 hours after treatment with auxin and remains high for at least 24 hours.1 Publication

Gene expression databases

GenevestigatoriQ94BT2.

Structurei

3D structure databases

ProteinModelPortaliQ94BT2.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini49 – 165117DOMONAdd
BLAST

Sequence similaritiesi

Contains 1 DOMON domain.

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiNOG307188.
HOGENOMiHOG000239821.
InParanoidiQ94BT2.
PhylomeDBiQ94BT2.

Family and domain databases

InterProiIPR005018. DOMON_domain.
IPR017214. UCP037471.
[Graphical view]
PfamiPF04526. DUF568. 1 hit.
[Graphical view]
SMARTiSM00664. DoH. 1 hit.
[Graphical view]
PROSITEiPS50836. DOMON. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q94BT2-1 [UniParc]FASTAAdd to Basket

« Hide

MASSSSSLLI LAVACFVSLI SPAISQQACK SQNLNSAGPF DSCEDLPVLN    50
SYLHYTYNSS NSSLSVAFVA TPSQANGGWV AWAINPTGTK MAGSQAFLAY 100
RSGGGAAPVV KTYNISSYSS LVEGKLAFDF WNLRAESLSG GRIAIFTTVK 150
VPAGADSVNQ VWQIGGNVTN GRPGVHPFGP DNLGSHRVLS FTEDAAPGSA 200
PSPGSAPAPG TSGSTTPGTA AGGPGNAGSL TRNVNFGVNL GILVLLGSIF 250
IF 252
Length:252
Mass (Da):25,592
Last modified:October 31, 2003 - v3
Checksum:iDB20541FE856E603
GO

Sequence cautioni

The sequence AAC62613.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.
The sequence AAK64012.2 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.
The sequence AEE74537.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti147 – 1471T → NR in AAC62613. 1 Publication
Sequence conflicti155 – 1551A → R in AAC62613. 1 Publication
Sequence conflicti207 – 2071P → PSPGSAP in AAC62613. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF055850 mRNA. Translation: AAC62613.1. Different initiation.
AC009853 Genomic DNA. Translation: AAF02148.1.
CP002686 Genomic DNA. Translation: AEE74537.1. Different initiation.
AY039908 mRNA. Translation: AAK64012.2. Different initiation.
AY077679 mRNA. Translation: AAL76157.1.
PIRiT51337.
RefSeqiNP_566306.3. NM_111618.3.
UniGeneiAt.48629.

Genome annotation databases

EnsemblPlantsiAT3G07390.1; AT3G07390.1; AT3G07390.
GeneIDi819927.
KEGGiath:AT3G07390.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF055850 mRNA. Translation: AAC62613.1 . Different initiation.
AC009853 Genomic DNA. Translation: AAF02148.1 .
CP002686 Genomic DNA. Translation: AEE74537.1 . Different initiation.
AY039908 mRNA. Translation: AAK64012.2 . Different initiation.
AY077679 mRNA. Translation: AAL76157.1 .
PIRi T51337.
RefSeqi NP_566306.3. NM_111618.3.
UniGenei At.48629.

3D structure databases

ProteinModelPortali Q94BT2.
ModBasei Search...
MobiDBi Search...

Proteomic databases

PaxDbi Q94BT2.
PRIDEi Q94BT2.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi AT3G07390.1 ; AT3G07390.1 ; AT3G07390 .
GeneIDi 819927.
KEGGi ath:AT3G07390.

Organism-specific databases

TAIRi AT3G07390.

Phylogenomic databases

eggNOGi NOG307188.
HOGENOMi HOG000239821.
InParanoidi Q94BT2.
PhylomeDBi Q94BT2.

Gene expression databases

Genevestigatori Q94BT2.

Family and domain databases

InterProi IPR005018. DOMON_domain.
IPR017214. UCP037471.
[Graphical view ]
Pfami PF04526. DUF568. 1 hit.
[Graphical view ]
SMARTi SM00664. DoH. 1 hit.
[Graphical view ]
PROSITEi PS50836. DOMON. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Isolation and characterization of cDNA clones corresponding with mRNAs that accumulate during auxin-induced lateral root formation."
    Neuteboom L.W., Ng J.M.Y., Kuyper M., Clijdesdale O.R., Hooykaas P.J.J., van der Zaal B.J.
    Plant Mol. Biol. 39:273-287(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], INDUCTION, DEVELOPMENTAL STAGE.
    Strain: cv. C24.
    Tissue: Cultured root.
  2. "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
    Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F.
    , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  3. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  4. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 8-252.
    Strain: cv. Columbia.
  5. "Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry."
    Nuehse T.S., Stensballe A., Jensen O.N., Peck S.C.
    Mol. Cell. Proteomics 2:1234-1243(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Strain: cv. La-0.
  6. "Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis."
    Borner G.H.H., Lilley K.S., Stevens T.J., Dupree P.
    Plant Physiol. 132:568-577(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: GPI-ANCHOR [LARGE SCALE ANALYSIS].
    Strain: cv. Columbia.
    Tissue: Callus.
  7. "Proteomic analysis of glycosylphosphatidylinositol-anchored membrane proteins."
    Elortza F., Nuehse T.S., Foster L.J., Stensballe A., Peck S.C., Jensen O.N.
    Mol. Cell. Proteomics 2:1261-1270(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: GPI-ANCHOR [LARGE SCALE ANALYSIS].
  8. "Modification-specific proteomics of plasma membrane proteins: identification and characterization of glycosylphosphatidylinositol-anchored proteins released upon phospholipase D treatment."
    Elortza F., Mohammed S., Bunkenborg J., Foster L.J., Nuehse T.S., Brodbeck U., Peck S.C., Jensen O.N.
    J. Proteome Res. 5:935-943(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: GPI-ANCHOR [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiAIR12_ARATH
AccessioniPrimary (citable) accession number: Q94BT2
Secondary accession number(s): F4JEF2, O82442, Q9SRS7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 31, 2003
Last sequence update: October 31, 2003
Last modified: June 11, 2014
This is version 84 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi