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Q94BT2 (AIR12_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified June 11, 2014. Version 84. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Auxin-induced in root cultures protein 12
Gene names
Name:AIR12
Ordered Locus Names:At3g07390
ORF Names:F21O3_10
OrganismArabidopsis thaliana (Mouse-ear cress) [Reference proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Protein attributes

Sequence length252 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

General annotation (Comments)

Subcellular location

Cell membrane; Lipid-anchorGPI-anchor.

Developmental stage

Expressed during auxin-induced lateral root formation. Ref.1

Induction

Induced between 4 and 8 hours after treatment with auxin and remains high for at least 24 hours. Ref.1

Sequence similarities

Contains 1 DOMON domain.

Sequence caution

The sequence AAC62613.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.

The sequence AAK64012.2 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.

The sequence AEE74537.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.

Ontologies

Keywords
   Biological processAuxin signaling pathway
   Cellular componentCell membrane
Membrane
   DomainSignal
   PTMGlycoprotein
GPI-anchor
Lipoprotein
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processauxin-activated signaling pathway

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componentanchored component of membrane

Inferred from electronic annotation. Source: UniProtKB-KW

plasma membrane

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2525 Potential
Chain26 – 228203Auxin-induced in root cultures protein 12
PRO_0000020655
Propeptide229 – 25224Removed in mature form Potential
PRO_0000020656

Regions

Domain49 – 165117DOMON

Amino acid modifications

Lipidation2281GPI-anchor amidated glycine Potential
Glycosylation581N-linked (GlcNAc...) Potential
Glycosylation611N-linked (GlcNAc...) Potential
Glycosylation1141N-linked (GlcNAc...) Potential
Glycosylation1671N-linked (GlcNAc...) Potential

Experimental info

Sequence conflict1471T → NR in AAC62613. Ref.1
Sequence conflict1551A → R in AAC62613. Ref.1
Sequence conflict2071P → PSPGSAP in AAC62613. Ref.1

Sequences

Sequence LengthMass (Da)Tools
Q94BT2 [UniParc].

Last modified October 31, 2003. Version 3.
Checksum: DB20541FE856E603

FASTA25225,592
        10         20         30         40         50         60 
MASSSSSLLI LAVACFVSLI SPAISQQACK SQNLNSAGPF DSCEDLPVLN SYLHYTYNSS 

        70         80         90        100        110        120 
NSSLSVAFVA TPSQANGGWV AWAINPTGTK MAGSQAFLAY RSGGGAAPVV KTYNISSYSS 

       130        140        150        160        170        180 
LVEGKLAFDF WNLRAESLSG GRIAIFTTVK VPAGADSVNQ VWQIGGNVTN GRPGVHPFGP 

       190        200        210        220        230        240 
DNLGSHRVLS FTEDAAPGSA PSPGSAPAPG TSGSTTPGTA AGGPGNAGSL TRNVNFGVNL 

       250 
GILVLLGSIF IF 

« Hide

References

« Hide 'large scale' references
[1]"Isolation and characterization of cDNA clones corresponding with mRNAs that accumulate during auxin-induced lateral root formation."
Neuteboom L.W., Ng J.M.Y., Kuyper M., Clijdesdale O.R., Hooykaas P.J.J., van der Zaal B.J.
Plant Mol. Biol. 39:273-287(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA], INDUCTION, DEVELOPMENTAL STAGE.
Strain: cv. C24.
Tissue: Cultured root.
[2]"Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F. expand/collapse author list , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[3]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
[4]"Empirical analysis of transcriptional activity in the Arabidopsis genome."
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. expand/collapse author list , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 8-252.
Strain: cv. Columbia.
[5]"Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry."
Nuehse T.S., Stensballe A., Jensen O.N., Peck S.C.
Mol. Cell. Proteomics 2:1234-1243(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
Strain: cv. La-0.
[6]"Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis."
Borner G.H.H., Lilley K.S., Stevens T.J., Dupree P.
Plant Physiol. 132:568-577(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: GPI-ANCHOR [LARGE SCALE ANALYSIS].
Strain: cv. Columbia.
Tissue: Callus.
[7]"Proteomic analysis of glycosylphosphatidylinositol-anchored membrane proteins."
Elortza F., Nuehse T.S., Foster L.J., Stensballe A., Peck S.C., Jensen O.N.
Mol. Cell. Proteomics 2:1261-1270(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: GPI-ANCHOR [LARGE SCALE ANALYSIS].
[8]"Modification-specific proteomics of plasma membrane proteins: identification and characterization of glycosylphosphatidylinositol-anchored proteins released upon phospholipase D treatment."
Elortza F., Mohammed S., Bunkenborg J., Foster L.J., Nuehse T.S., Brodbeck U., Peck S.C., Jensen O.N.
J. Proteome Res. 5:935-943(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: GPI-ANCHOR [LARGE SCALE ANALYSIS].
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AF055850 mRNA. Translation: AAC62613.1. Different initiation.
AC009853 Genomic DNA. Translation: AAF02148.1.
CP002686 Genomic DNA. Translation: AEE74537.1. Different initiation.
AY039908 mRNA. Translation: AAK64012.2. Different initiation.
AY077679 mRNA. Translation: AAL76157.1.
PIRT51337.
RefSeqNP_566306.3. NM_111618.3.
UniGeneAt.48629.

3D structure databases

ProteinModelPortalQ94BT2.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PaxDbQ94BT2.
PRIDEQ94BT2.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT3G07390.1; AT3G07390.1; AT3G07390.
GeneID819927.
KEGGath:AT3G07390.

Organism-specific databases

TAIRAT3G07390.

Phylogenomic databases

eggNOGNOG307188.
HOGENOMHOG000239821.
InParanoidQ94BT2.
PhylomeDBQ94BT2.

Gene expression databases

GenevestigatorQ94BT2.

Family and domain databases

InterProIPR005018. DOMON_domain.
IPR017214. UCP037471.
[Graphical view]
PfamPF04526. DUF568. 1 hit.
[Graphical view]
SMARTSM00664. DoH. 1 hit.
[Graphical view]
PROSITEPS50836. DOMON. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameAIR12_ARATH
AccessionPrimary (citable) accession number: Q94BT2
Secondary accession number(s): F4JEF2, O82442, Q9SRS7
Entry history
Integrated into UniProtKB/Swiss-Prot: October 31, 2003
Last sequence update: October 31, 2003
Last modified: June 11, 2014
This is version 84 of the entry and version 3 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names