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Q94B59 (PP372_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 72. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Pentatricopeptide repeat-containing protein At5g09450, mitochondrial
Gene names
Ordered Locus Names:At5g09450
ORF Names:T5E8_250
OrganismArabidopsis thaliana (Mouse-ear cress) [Reference proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Protein attributes

Sequence length409 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at transcript level

General annotation (Comments)

Subcellular location

Mitochondrion Potential.

Sequence similarities

Belongs to the PPR family. P subfamily.

Contains 6 PPR (pentatricopeptide) repeats.

Sequence caution

The sequence CAC05471.1 differs from that shown. Reason: Erroneous gene model prediction.

Ontologies

Keywords
   Cellular componentMitochondrion
   DomainRepeat
Transit peptide
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular_componentmitochondrion

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Transit peptide1 – 7070Mitochondrion Potential
Chain71 – 409339Pentatricopeptide repeat-containing protein At5g09450, mitochondrial
PRO_0000363509

Regions

Repeat155 – 18935PPR 1
Repeat191 – 22535PPR 2
Repeat226 – 25631PPR 3
Repeat262 – 29635PPR 4
Repeat298 – 33235PPR 5
Repeat333 – 36735PPR 6

Experimental info

Sequence conflict1501D → H in AAM64472. Ref.4

Sequences

Sequence LengthMass (Da)Tools
Q94B59 [UniParc].

Last modified December 1, 2001. Version 1.
Checksum: 8C40FF3B52F02194

FASTA40946,809
        10         20         30         40         50         60 
MATRSLFHSL RCRLTNNGVL GSNFIRNAES SRFSKSYNAD AAIGNSLVEE SEEKDDLKSR 

        70         80         90        100        110        120 
IFRLRLPKRS ATTVLEKWIG EGNQMTINEL REISKELRRT RRYKHALEVT EWMVQHEESK 

       130        140        150        160        170        180 
ISDADYASRI DLISKVFGID AAERYFEGLD IDSKTAETYT SLLHAYAASK QTERAEALFK 

       190        200        210        220        230        240 
RIIESDSLTF GAITYNEMMT LYMSVGQVEK VPEVIEVLKQ KKVSPDIFTY NLWLSSCAAT 

       250        260        270        280        290        300 
FNIDELRKIL EEMRHDASSN EGWVRYIDLT SIYINSSRVT NAESTLPVEA EKSISQREWI 

       310        320        330        340        350        360 
TYDFLMILHT GLGNKVMIDQ IWKSLRNTNQ ILSSRSYICV LSSYLMLGHL REAEEIIHQW 

       370        380        390        400 
KESKTTEFDA SACLRILNAF RDVGLEGIAS GFHLILVHNK CSLENEGSS 

« Hide

References

« Hide 'large scale' references
[1]"Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana."
Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K. expand/collapse author list , Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A., Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T., Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U., Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.
Nature 408:823-826(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
[3]"Empirical analysis of transcriptional activity in the Arabidopsis genome."
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. expand/collapse author list , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
[4]"Full-length cDNA from Arabidopsis thaliana."
Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
[5]"Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis."
Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C., Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M., Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B., Taconnat L., Small I.
Plant Cell 16:2089-2103(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: GENE FAMILY.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AL391712 Genomic DNA. Translation: CAC05471.1. Sequence problems.
CP002688 Genomic DNA. Translation: AED91395.1.
AY042834 mRNA. Translation: AAK68774.1.
BT002562 mRNA. Translation: AAO00922.1.
AY086405 mRNA. Translation: AAM64472.1.
RefSeqNP_568214.1. NM_120982.3.
UniGeneAt.20970.

3D structure databases

ProteinModelPortalQ94B59.
SMRQ94B59. Positions 139-383.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

BioGrid16082. 6 interactions.
IntActQ94B59. 6 interactions.
STRING3702.AT5G09450.1-P.

Proteomic databases

PaxDbQ94B59.
PRIDEQ94B59.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT5G09450.1; AT5G09450.1; AT5G09450.
GeneID830804.
KEGGath:AT5G09450.

Organism-specific databases

TAIRAT5G09450.

Phylogenomic databases

eggNOGNOG322538.
HOGENOMHOG000240837.
InParanoidQ94B59.
OMAQREWITY.
PhylomeDBQ94B59.

Gene expression databases

GenevestigatorQ94B59.

Family and domain databases

Gene3D1.25.40.10. 1 hit.
InterProIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical.
[Graphical view]
PfamPF01535. PPR. 2 hits.
PF13041. PPR_2. 1 hit.
[Graphical view]
TIGRFAMsTIGR00756. PPR. 2 hits.
PROSITEPS51375. PPR. 4 hits.
[Graphical view]
ProtoNetSearch...

Entry information

Entry namePP372_ARATH
AccessionPrimary (citable) accession number: Q94B59
Secondary accession number(s): Q8LCU1, Q9FY70
Entry history
Integrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: December 1, 2001
Last modified: May 14, 2014
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names