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Q94B59

- PP372_ARATH

UniProt

Q94B59 - PP372_ARATH

Protein

Pentatricopeptide repeat-containing protein At5g09450, mitochondrial

Gene

At5g09450

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 73 (01 Oct 2014)
      Sequence version 1 (01 Dec 2001)
      Previous versions | rss
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    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Pentatricopeptide repeat-containing protein At5g09450, mitochondrial
    Gene namesi
    Ordered Locus Names:At5g09450
    ORF Names:T5E8_250
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 5

    Organism-specific databases

    TAIRiAT5G09450.

    Subcellular locationi

    GO - Cellular componenti

    1. mitochondrion Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Mitochondrion

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transit peptidei1 – 7070MitochondrionSequence AnalysisAdd
    BLAST
    Chaini71 – 409339Pentatricopeptide repeat-containing protein At5g09450, mitochondrialPRO_0000363509Add
    BLAST

    Proteomic databases

    PaxDbiQ94B59.
    PRIDEiQ94B59.

    Expressioni

    Gene expression databases

    GenevestigatoriQ94B59.

    Interactioni

    Protein-protein interaction databases

    BioGridi16082. 6 interactions.
    IntActiQ94B59. 6 interactions.
    STRINGi3702.AT5G09450.1-P.

    Structurei

    3D structure databases

    ProteinModelPortaliQ94B59.
    SMRiQ94B59. Positions 139-383.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Repeati155 – 18935PPR 1Add
    BLAST
    Repeati191 – 22535PPR 2Add
    BLAST
    Repeati226 – 25631PPR 3Add
    BLAST
    Repeati262 – 29635PPR 4Add
    BLAST
    Repeati298 – 33235PPR 5Add
    BLAST
    Repeati333 – 36735PPR 6Add
    BLAST

    Sequence similaritiesi

    Belongs to the PPR family. P subfamily.Curated
    Contains 6 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

    Keywords - Domaini

    Repeat, Transit peptide

    Phylogenomic databases

    eggNOGiNOG322538.
    HOGENOMiHOG000240837.
    InParanoidiQ94B59.
    OMAiQREWITY.
    PhylomeDBiQ94B59.

    Family and domain databases

    Gene3Di1.25.40.10. 1 hit.
    InterProiIPR002885. Pentatricopeptide_repeat.
    IPR011990. TPR-like_helical.
    [Graphical view]
    PfamiPF01535. PPR. 2 hits.
    PF13041. PPR_2. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR00756. PPR. 2 hits.
    PROSITEiPS51375. PPR. 4 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q94B59-1 [UniParc]FASTAAdd to Basket

    « Hide

    MATRSLFHSL RCRLTNNGVL GSNFIRNAES SRFSKSYNAD AAIGNSLVEE    50
    SEEKDDLKSR IFRLRLPKRS ATTVLEKWIG EGNQMTINEL REISKELRRT 100
    RRYKHALEVT EWMVQHEESK ISDADYASRI DLISKVFGID AAERYFEGLD 150
    IDSKTAETYT SLLHAYAASK QTERAEALFK RIIESDSLTF GAITYNEMMT 200
    LYMSVGQVEK VPEVIEVLKQ KKVSPDIFTY NLWLSSCAAT FNIDELRKIL 250
    EEMRHDASSN EGWVRYIDLT SIYINSSRVT NAESTLPVEA EKSISQREWI 300
    TYDFLMILHT GLGNKVMIDQ IWKSLRNTNQ ILSSRSYICV LSSYLMLGHL 350
    REAEEIIHQW KESKTTEFDA SACLRILNAF RDVGLEGIAS GFHLILVHNK 400
    CSLENEGSS 409
    Length:409
    Mass (Da):46,809
    Last modified:December 1, 2001 - v1
    Checksum:i8C40FF3B52F02194
    GO

    Sequence cautioni

    The sequence CAC05471.1 differs from that shown. Reason: Erroneous gene model prediction.

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti150 – 1501D → H in AAM64472. 1 PublicationCurated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL391712 Genomic DNA. Translation: CAC05471.1. Sequence problems.
    CP002688 Genomic DNA. Translation: AED91395.1.
    AY042834 mRNA. Translation: AAK68774.1.
    BT002562 mRNA. Translation: AAO00922.1.
    AY086405 mRNA. Translation: AAM64472.1.
    RefSeqiNP_568214.1. NM_120982.3.
    UniGeneiAt.20970.

    Genome annotation databases

    EnsemblPlantsiAT5G09450.1; AT5G09450.1; AT5G09450.
    GeneIDi830804.
    KEGGiath:AT5G09450.

    Cross-referencesi

    Web resourcesi

    Arabidopsis PPR Protein Database

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL391712 Genomic DNA. Translation: CAC05471.1 . Sequence problems.
    CP002688 Genomic DNA. Translation: AED91395.1 .
    AY042834 mRNA. Translation: AAK68774.1 .
    BT002562 mRNA. Translation: AAO00922.1 .
    AY086405 mRNA. Translation: AAM64472.1 .
    RefSeqi NP_568214.1. NM_120982.3.
    UniGenei At.20970.

    3D structure databases

    ProteinModelPortali Q94B59.
    SMRi Q94B59. Positions 139-383.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 16082. 6 interactions.
    IntActi Q94B59. 6 interactions.
    STRINGi 3702.AT5G09450.1-P.

    Proteomic databases

    PaxDbi Q94B59.
    PRIDEi Q94B59.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT5G09450.1 ; AT5G09450.1 ; AT5G09450 .
    GeneIDi 830804.
    KEGGi ath:AT5G09450.

    Organism-specific databases

    TAIRi AT5G09450.

    Phylogenomic databases

    eggNOGi NOG322538.
    HOGENOMi HOG000240837.
    InParanoidi Q94B59.
    OMAi QREWITY.
    PhylomeDBi Q94B59.

    Gene expression databases

    Genevestigatori Q94B59.

    Family and domain databases

    Gene3Di 1.25.40.10. 1 hit.
    InterProi IPR002885. Pentatricopeptide_repeat.
    IPR011990. TPR-like_helical.
    [Graphical view ]
    Pfami PF01535. PPR. 2 hits.
    PF13041. PPR_2. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR00756. PPR. 2 hits.
    PROSITEi PS51375. PPR. 4 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana."
      Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.
      , Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A., Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T., Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U., Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.
      Nature 408:823-826(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Columbia.
    2. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. Columbia.
    3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
      Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
      , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
      Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Columbia.
    4. "Full-length cDNA from Arabidopsis thaliana."
      Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
      Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    5. "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis."
      Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C., Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M., Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B., Taconnat L., Small I.
      Plant Cell 16:2089-2103(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENE FAMILY.

    Entry informationi

    Entry nameiPP372_ARATH
    AccessioniPrimary (citable) accession number: Q94B59
    Secondary accession number(s): Q8LCU1, Q9FY70
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 10, 2009
    Last sequence update: December 1, 2001
    Last modified: October 1, 2014
    This is version 73 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3