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Q94B59

- PP372_ARATH

UniProt

Q94B59 - PP372_ARATH

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Protein

Pentatricopeptide repeat-containing protein At5g09450, mitochondrial

Gene

At5g09450

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At5g09450, mitochondrial
Gene namesi
Ordered Locus Names:At5g09450
ORF Names:T5E8_250
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 5

Organism-specific databases

TAIRiAT5G09450.

Subcellular locationi

GO - Cellular componenti

  1. mitochondrion Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 7070MitochondrionSequence AnalysisAdd
BLAST
Chaini71 – 409339Pentatricopeptide repeat-containing protein At5g09450, mitochondrialPRO_0000363509Add
BLAST

Proteomic databases

PaxDbiQ94B59.
PRIDEiQ94B59.

Expressioni

Gene expression databases

GenevestigatoriQ94B59.

Interactioni

Protein-protein interaction databases

BioGridi16082. 6 interactions.
IntActiQ94B59. 6 interactions.
STRINGi3702.AT5G09450.1-P.

Structurei

3D structure databases

ProteinModelPortaliQ94B59.
SMRiQ94B59. Positions 139-383.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati155 – 18935PPR 1Add
BLAST
Repeati191 – 22535PPR 2Add
BLAST
Repeati226 – 25631PPR 3Add
BLAST
Repeati262 – 29635PPR 4Add
BLAST
Repeati298 – 33235PPR 5Add
BLAST
Repeati333 – 36735PPR 6Add
BLAST

Sequence similaritiesi

Belongs to the PPR family. P subfamily.Curated
Contains 6 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiNOG322538.
HOGENOMiHOG000240837.
InParanoidiQ94B59.
OMAiQREWITY.
PhylomeDBiQ94B59.

Family and domain databases

Gene3Di1.25.40.10. 1 hit.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF01535. PPR. 2 hits.
PF13041. PPR_2. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 2 hits.
PROSITEiPS51375. PPR. 4 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q94B59-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MATRSLFHSL RCRLTNNGVL GSNFIRNAES SRFSKSYNAD AAIGNSLVEE
60 70 80 90 100
SEEKDDLKSR IFRLRLPKRS ATTVLEKWIG EGNQMTINEL REISKELRRT
110 120 130 140 150
RRYKHALEVT EWMVQHEESK ISDADYASRI DLISKVFGID AAERYFEGLD
160 170 180 190 200
IDSKTAETYT SLLHAYAASK QTERAEALFK RIIESDSLTF GAITYNEMMT
210 220 230 240 250
LYMSVGQVEK VPEVIEVLKQ KKVSPDIFTY NLWLSSCAAT FNIDELRKIL
260 270 280 290 300
EEMRHDASSN EGWVRYIDLT SIYINSSRVT NAESTLPVEA EKSISQREWI
310 320 330 340 350
TYDFLMILHT GLGNKVMIDQ IWKSLRNTNQ ILSSRSYICV LSSYLMLGHL
360 370 380 390 400
REAEEIIHQW KESKTTEFDA SACLRILNAF RDVGLEGIAS GFHLILVHNK

CSLENEGSS
Length:409
Mass (Da):46,809
Last modified:December 1, 2001 - v1
Checksum:i8C40FF3B52F02194
GO

Sequence cautioni

The sequence CAC05471.1 differs from that shown. Reason: Erroneous gene model prediction.

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti150 – 1501D → H in AAM64472. 1 PublicationCurated

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL391712 Genomic DNA. Translation: CAC05471.1. Sequence problems.
CP002688 Genomic DNA. Translation: AED91395.1.
AY042834 mRNA. Translation: AAK68774.1.
BT002562 mRNA. Translation: AAO00922.1.
AY086405 mRNA. Translation: AAM64472.1.
RefSeqiNP_568214.1. NM_120982.3.
UniGeneiAt.20970.

Genome annotation databases

EnsemblPlantsiAT5G09450.1; AT5G09450.1; AT5G09450.
GeneIDi830804.
KEGGiath:AT5G09450.

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL391712 Genomic DNA. Translation: CAC05471.1 . Sequence problems.
CP002688 Genomic DNA. Translation: AED91395.1 .
AY042834 mRNA. Translation: AAK68774.1 .
BT002562 mRNA. Translation: AAO00922.1 .
AY086405 mRNA. Translation: AAM64472.1 .
RefSeqi NP_568214.1. NM_120982.3.
UniGenei At.20970.

3D structure databases

ProteinModelPortali Q94B59.
SMRi Q94B59. Positions 139-383.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 16082. 6 interactions.
IntActi Q94B59. 6 interactions.
STRINGi 3702.AT5G09450.1-P.

Proteomic databases

PaxDbi Q94B59.
PRIDEi Q94B59.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi AT5G09450.1 ; AT5G09450.1 ; AT5G09450 .
GeneIDi 830804.
KEGGi ath:AT5G09450.

Organism-specific databases

TAIRi AT5G09450.

Phylogenomic databases

eggNOGi NOG322538.
HOGENOMi HOG000240837.
InParanoidi Q94B59.
OMAi QREWITY.
PhylomeDBi Q94B59.

Gene expression databases

Genevestigatori Q94B59.

Family and domain databases

Gene3Di 1.25.40.10. 1 hit.
InterProi IPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view ]
Pfami PF01535. PPR. 2 hits.
PF13041. PPR_2. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR00756. PPR. 2 hits.
PROSITEi PS51375. PPR. 4 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana."
    Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.
    , Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A., Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T., Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U., Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.
    Nature 408:823-826(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Full-length cDNA from Arabidopsis thaliana."
    Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
    Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
  5. "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis."
    Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C., Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M., Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B., Taconnat L., Small I.
    Plant Cell 16:2089-2103(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY.

Entry informationi

Entry nameiPP372_ARATH
AccessioniPrimary (citable) accession number: Q94B59
Secondary accession number(s): Q8LCU1, Q9FY70
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: December 1, 2001
Last modified: October 29, 2014
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3