Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Cyclic nucleotide-gated ion channel 4

Gene

CNGC4

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at transcript leveli

Functioni

Acts as cyclic nucleotide-gated ion channel. Permeable to potassium and sodium in a cyclic nucleotide-dependent fashion (cAMP or cGMP). Might constitute a common downstream component of the signaling pathways leading to hypersensitive response (HR).1 Publication

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei565 – 5651cNMPBy similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi496 – 626131cNMPAdd
BLAST

GO - Molecular functioni

GO - Biological processi

  • cation transmembrane transport Source: GOC
  • plant-type hypersensitive response Source: TAIR
  • potassium ion transmembrane transport Source: GOC
  • regulation of membrane potential Source: GO_Central
Complete GO annotation...

Keywords - Molecular functioni

Ion channel, Ligand-gated ion channel

Keywords - Biological processi

Hypersensitive response, Ion transport, Plant defense, Transport

Keywords - Ligandi

Calmodulin-binding, cAMP, cAMP-binding, cGMP, cGMP-binding, Nucleotide-binding

Enzyme and pathway databases

ReactomeiR-ATH-2485179. Activation of the phototransduction cascade.
R-ATH-2514859. Inactivation, recovery and regulation of the phototransduction cascade.
R-ATH-5620916. VxPx cargo-targeting to cilium.

Protein family/group databases

TCDBi1.A.1.5.7. the voltage-gated ion channel (vic) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
Cyclic nucleotide-gated ion channel 4
Short name:
AtCNGC4
Alternative name(s):
Cyclic nucleotide- and calmodulin-regulated ion channel 4
Short name:
AtHLM1
Gene namesi
Name:CNGC4
Synonyms:HLM1
Ordered Locus Names:At5g54250
ORF Names:MDK4.7
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G54250.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 9292CytoplasmicSequence analysisAdd
BLAST
Transmembranei93 – 11321Helical; Name=H1Sequence analysisAdd
BLAST
Topological domaini114 – 12613ExtracellularSequence analysisAdd
BLAST
Transmembranei127 – 14721Helical; Name=H2Sequence analysisAdd
BLAST
Topological domaini148 – 18740CytoplasmicSequence analysisAdd
BLAST
Transmembranei188 – 20821Helical; Name=H3Sequence analysisAdd
BLAST
Topological domaini209 – 2168ExtracellularSequence analysis
Transmembranei217 – 23721Helical; Name=H4Sequence analysisAdd
BLAST
Topological domaini238 – 25114CytoplasmicSequence analysisAdd
BLAST
Transmembranei252 – 27221Helical; Name=H5Sequence analysisAdd
BLAST
Topological domaini273 – 392120ExtracellularSequence analysisAdd
BLAST
Transmembranei393 – 41321Helical; Name=H6Sequence analysisAdd
BLAST
Topological domaini414 – 694281CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • membrane Source: TAIR
  • plasma membrane Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

Pathology & Biotechi

Disruption phenotypei

Loss-of-function mutation results in the loss of the hypersensitive response leading to broad spectrum disease resistance, and displays a lesion-mimic phenotype.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 694694Cyclic nucleotide-gated ion channel 4PRO_0000219332Add
BLAST

Proteomic databases

PaxDbiQ94AS9.
PRIDEiQ94AS9.

PTM databases

iPTMnetiQ94AS9.

Expressioni

Inductioni

Induced by both ethylene and methyl jasmonate treatments, or after pathogen attack.

Gene expression databases

ExpressionAtlasiQ94AS9. baseline and differential.
GenevisibleiQ94AS9. AT.

Interactioni

Subunit structurei

Homotetramer or heterotetramer.Curated

Protein-protein interaction databases

STRINGi3702.AT5G54250.1.

Structurei

3D structure databases

ProteinModelPortaliQ94AS9.
SMRiQ94AS9. Positions 428-611.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini631 – 66030IQAdd
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni610 – 62617Calmodulin-bindingBy similarityAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi25 – 5228Glu-richAdd
BLAST

Domaini

The binding of calmodulin to the C-terminus might interfere with cyclic nucleotide binding and thus channel activation.By similarity

Sequence similaritiesi

Contains 1 cyclic nucleotide-binding domain.PROSITE-ProRule annotation
Contains 1 IQ domain.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG0498. Eukaryota.
ENOG410XPSE. LUCA.
HOGENOMiHOG000238338.
InParanoidiQ94AS9.
OMAiSVCLDIN.
PhylomeDBiQ94AS9.

Family and domain databases

Gene3Di2.60.120.10. 1 hit.
InterProiIPR018490. cNMP-bd-like.
IPR000595. cNMP-bd_dom.
IPR005821. Ion_trans_dom.
IPR014710. RmlC-like_jellyroll.
[Graphical view]
PfamiPF00520. Ion_trans. 1 hit.
[Graphical view]
SMARTiSM00100. cNMP. 1 hit.
[Graphical view]
SUPFAMiSSF51206. SSF51206. 1 hit.
PROSITEiPS50042. CNMP_BINDING_3. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q94AS9-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MATEQEFTRA SRFSRDSSSV GYYSEEDNTE EEDEEEEEME EIEEEEEEEE
60 70 80 90 100
EEDPRIGLTC GGRRNGSSNN NKWMMLGRIL DPRSKWVREW NKVFLLVCAT
110 120 130 140 150
GLFVDPLFLY TLSVSDTCMC LLVDGWLALT VTALRSMTDL LHLWNIWIQF
160 170 180 190 200
KIARRWPYPG GDSDGDTNKG GGTRGSTRVA PPYVKKNGFF FDLFVILPLP
210 220 230 240 250
QVVLWVVIPS LLKRGSVTLV VSVLLVTFLF QYLPKIYHSI RHLRRNATLS
260 270 280 290 300
GYIFGTVWWG IALNMIAYFV AAHAAGACWY LLGVQRSAKC LKEQCENTIG
310 320 330 340 350
CDLRMLSCKE PVYYGTTVMV LDRARLAWAQ NHQARSVCLD INTNYTYGAY
360 370 380 390 400
QWTIQLVSSE SRLEKILFPI FWGLMTLSTF GNLESTTEWS EVVFNIIVLT
410 420 430 440 450
SGLLLVTMLI GNIKVFLHAT TSKKQAMHLK MRNIEWWMKK RHLPIGFRQR
460 470 480 490 500
VRNYERQRWA AMRGVDECEM VQNLPEGLRR DIKYHLCLDL VRQVPLFQHM
510 520 530 540 550
DDLVLENICD RVKSLIFTKG ETIQKEGDAV QRMLFVVRGH LQSSQLLRDG
560 570 580 590 600
VKSCCMLGPG NFSGDELLSW CLRRPFVERL PPSSSTLVTL ETTEAFGLDA
610 620 630 640 650
EDVKYVTQHF RYTFVNEKVK RSARYYSPGW RTWAAVAVQL AWRRYKHRLT
660 670 680 690
LTSLSFIRPR RPLSRCASLG EDKLRLYAAI LTSPKPNPDD FDDY
Length:694
Mass (Da):80,081
Last modified:November 21, 2003 - v2
Checksum:iE3F843AE1B0F1EA0
GO
Isoform 2 (identifier: Q94AS9-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     274-293: AAGACWYLLGVQRSAKCLKE → VSYLINCFVLLNILVNTKFQ
     294-694: Missing.

Note: No experimental confirmation available.
Show »
Length:293
Mass (Da):33,665
Checksum:iCBC9AA9DF55C9EE4
GO

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei274 – 29320AAGAC…KCLKE → VSYLINCFVLLNILVNTKFQ in isoform 2. 1 PublicationVSP_008985Add
BLAST
Alternative sequencei294 – 694401Missing in isoform 2. 1 PublicationVSP_008986Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y17912 mRNA. Translation: CAB40129.1.
AB010695 Genomic DNA. Translation: BAB10748.1.
CP002688 Genomic DNA. Translation: AED96473.1.
CP002688 Genomic DNA. Translation: AED96474.1.
AY045822 mRNA. Translation: AAK76496.1.
AY057691 mRNA. Translation: AAL15321.1.
AY133734 mRNA. Translation: AAM91668.1.
PIRiT52574.
RefSeqiNP_200236.1. NM_124805.2. [Q94AS9-1]
NP_851188.1. NM_180857.1. [Q94AS9-1]
UniGeneiAt.401.

Genome annotation databases

EnsemblPlantsiAT5G54250.1; AT5G54250.1; AT5G54250. [Q94AS9-1]
AT5G54250.2; AT5G54250.2; AT5G54250. [Q94AS9-1]
GeneIDi835513.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y17912 mRNA. Translation: CAB40129.1.
AB010695 Genomic DNA. Translation: BAB10748.1.
CP002688 Genomic DNA. Translation: AED96473.1.
CP002688 Genomic DNA. Translation: AED96474.1.
AY045822 mRNA. Translation: AAK76496.1.
AY057691 mRNA. Translation: AAL15321.1.
AY133734 mRNA. Translation: AAM91668.1.
PIRiT52574.
RefSeqiNP_200236.1. NM_124805.2. [Q94AS9-1]
NP_851188.1. NM_180857.1. [Q94AS9-1]
UniGeneiAt.401.

3D structure databases

ProteinModelPortaliQ94AS9.
SMRiQ94AS9. Positions 428-611.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT5G54250.1.

Protein family/group databases

TCDBi1.A.1.5.7. the voltage-gated ion channel (vic) superfamily.

PTM databases

iPTMnetiQ94AS9.

Proteomic databases

PaxDbiQ94AS9.
PRIDEiQ94AS9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G54250.1; AT5G54250.1; AT5G54250. [Q94AS9-1]
AT5G54250.2; AT5G54250.2; AT5G54250. [Q94AS9-1]
GeneIDi835513.

Organism-specific databases

TAIRiAT5G54250.

Phylogenomic databases

eggNOGiKOG0498. Eukaryota.
ENOG410XPSE. LUCA.
HOGENOMiHOG000238338.
InParanoidiQ94AS9.
OMAiSVCLDIN.
PhylomeDBiQ94AS9.

Enzyme and pathway databases

ReactomeiR-ATH-2485179. Activation of the phototransduction cascade.
R-ATH-2514859. Inactivation, recovery and regulation of the phototransduction cascade.
R-ATH-5620916. VxPx cargo-targeting to cilium.

Miscellaneous databases

PROiQ94AS9.

Gene expression databases

ExpressionAtlasiQ94AS9. baseline and differential.
GenevisibleiQ94AS9. AT.

Family and domain databases

Gene3Di2.60.120.10. 1 hit.
InterProiIPR018490. cNMP-bd-like.
IPR000595. cNMP-bd_dom.
IPR005821. Ion_trans_dom.
IPR014710. RmlC-like_jellyroll.
[Graphical view]
PfamiPF00520. Ion_trans. 1 hit.
[Graphical view]
SMARTiSM00100. cNMP. 1 hit.
[Graphical view]
SUPFAMiSSF51206. SSF51206. 1 hit.
PROSITEiPS50042. CNMP_BINDING_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Characterisation of a novel gene family of putative cyclic nucleotide- and calmodulin-regulated ion channels in Arabidopsis thaliana."
    Koehler C., Merkle T., Neuhaus G.
    Plant J. 18:97-104(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
    Strain: cv. Columbia.
  2. "Structural analysis of Arabidopsis thaliana chromosome 5. V. Sequence features of the regions of 1,381,565 bp covered by twenty one physically assigned P1 and TAC clones."
    Kaneko T., Kotani H., Nakamura Y., Sato S., Asamizu E., Miyajima N., Tabata S.
    DNA Res. 5:131-145(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  3. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  4. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
    Strain: cv. Columbia.
  5. Cited for: GENE FAMILY, NOMENCLATURE.
  6. "HLM1, an essential signaling component in the hypersensitive response, is a member of the cyclic nucleotide-gated channel ion channel family."
    Balague C., Lin B., Alcon C., Flottes G., Malmstroem S., Koehler C., Neuhaus G., Pelletier G., Gaymard F., Roby D.
    Plant Cell 15:365-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION, DISRUPTION PHENOTYPE.

Entry informationi

Entry nameiCNGC4_ARATH
AccessioniPrimary (citable) accession number: Q94AS9
Secondary accession number(s): Q9XFS2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 21, 2003
Last sequence update: November 21, 2003
Last modified: May 11, 2016
This is version 113 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.