Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Probable polygalacturonase At1g80170

Gene

At1g80170

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Catalytic activityi

Random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei249Proton donorPROSITE-ProRule annotation1
Active sitei272PROSITE-ProRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionGlycosidase, Hydrolase
Biological processCell wall biogenesis/degradation

Enzyme and pathway databases

BioCyciARA:AT1G80170-MONOMER

Protein family/group databases

CAZyiGH28 Glycoside Hydrolase Family 28

Names & Taxonomyi

Protein namesi
Recommended name:
Probable polygalacturonase At1g80170 (EC:3.2.1.15)
Short name:
PG
Alternative name(s):
Pectinase At1g80170
Gene namesi
Ordered Locus Names:At1g80170
ORF Names:F18B13.25
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G80170
TAIRilocus:2016314 AT1G80170

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cell wall, Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 28Sequence analysisAdd BLAST28
ChainiPRO_000036791729 – 444Probable polygalacturonase At1g80170Add BLAST416

Proteomic databases

PaxDbiQ94AJ5

PTM databases

iPTMnetiQ94AJ5

Expressioni

Tissue specificityi

Expressed in young, mature and dehiscing anthers. Found in stems, but not in roots or in abscission zone of floral organs.2 Publications

Gene expression databases

ExpressionAtlasiQ94AJ5 baseline and differential
GenevisibleiQ94AJ5 AT

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
NIP1-1Q8VZW12EBI-4457426,EBI-4424378

Protein-protein interaction databases

BioGridi29575, 2 interactors
IntActiQ94AJ5, 2 interactors
STRINGi3702.AT1G80170.1

Structurei

3D structure databases

ProteinModelPortaliQ94AJ5
SMRiQ94AJ5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati208 – 234PbH1 1Add BLAST27
Repeati235 – 256PbH1 2Add BLAST22
Repeati258 – 278PbH1 3Add BLAST21
Repeati288 – 309PbH1 4Add BLAST22
Repeati317 – 338PbH1 5Add BLAST22
Repeati351 – 378PbH1 6Add BLAST28

Sequence similaritiesi

Belongs to the glycosyl hydrolase 28 family.Curated

Keywords - Domaini

Repeat, Signal

Phylogenomic databases

eggNOGiENOG410IJY9 Eukaryota
COG5434 LUCA
HOGENOMiHOG000237792
InParanoidiQ94AJ5
OMAiNVIDSQQ
OrthoDBiEOG09360ADQ
PhylomeDBiQ94AJ5

Family and domain databases

Gene3Di2.160.20.10, 1 hit
InterProiView protein in InterPro
IPR000743 Glyco_hydro_28
IPR006626 PbH1
IPR012334 Pectin_lyas_fold
IPR011050 Pectin_lyase_fold/virulence
PfamiView protein in Pfam
PF00295 Glyco_hydro_28, 1 hit
SMARTiView protein in SMART
SM00710 PbH1, 6 hits
SUPFAMiSSF51126 SSF51126, 1 hit
PROSITEiView protein in PROSITE
PS00502 POLYGALACTURONASE, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q94AJ5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSYSRGGTLV TLLLLLVVAS SLALTANANS FESLLQLPRR QSRSTRPRSE
60 70 80 90 100
RLLHVGNFGA KGNGVTDDTK AFADAWKTAC SSKVKTRILV PENYTCLLRP
110 120 130 140 150
IDLSGPCKAR LTLQISGTII APNDPDVWEG LNRRKWLYFH GLSRLTVEGG
160 170 180 190 200
GTVNGMGQEW WERSCKHNHS NPCRGAPTAL TFHKCKNMRV ENLNVIDSQQ
210 220 230 240 250
MHIALTSCRR VTISGLKVIA PATSPNTDGI HISVSRGIVI DNTTVSTGDD
260 270 280 290 300
CISIVKNSTQ ISISNIICGP GHGISIGSLG KSKSWEEVRD ITVDTAIISD
310 320 330 340 350
TANGVRIKTW QGGSGLVSKI IFRNIKMNNV SNPIIIDQYY CDSRKPCANQ
360 370 380 390 400
TSAISIENIS FVHVRGTSAS KEAIKISCSD SSPCRNILLQ DIDLEPSNGD
410 420 430 440
GFTESFCWEA YGSSSGQVYP PPCLSDDTSF LEQSVQSGIT SAYL
Length:444
Mass (Da):48,172
Last modified:December 1, 2001 - v1
Checksum:i8FC52117E96B6418
GO

Sequence cautioni

The sequence AAD55489 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009322 Genomic DNA Translation: AAD55489.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE36366.1
AY046002 mRNA Translation: AAK76676.1
AY142668 mRNA Translation: AAN13206.1
PIRiD96833
RefSeqiNP_565232.1, NM_106666.4
UniGeneiAt.11620

Genome annotation databases

EnsemblPlantsiAT1G80170.1; AT1G80170.1; AT1G80170
GeneIDi844357
GrameneiAT1G80170.1; AT1G80170.1; AT1G80170
KEGGiath:AT1G80170

Similar proteinsi

Entry informationi

Entry nameiPGLR5_ARATH
AccessioniPrimary (citable) accession number: Q94AJ5
Secondary accession number(s): Q9SSC2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: December 1, 2001
Last modified: April 25, 2018
This is version 107 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health